Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0004500 Simmondsia chinensis HOM05D003369 ORTHO05D004089 5.8e-39 163.7 80 100.0
Sc05g0004490 Simmondsia chinensis HOM05D003369 ORTHO05D004089 4.8e-33 144.1 77 90.9
Nitab4.5_0011372g0040 Nicotiana tabacum HOM05D003369 ORTHO05D004089 7.9e-20 100.1 76 65.8
EL10Ac3g06746 Beta vulgaris HOM05D003369 ORTHO05D004089 2.3e-19 98.6 73 64.4
QL05p063633 Quercus lobata HOM05D003369 ORTHO05D004089 2.3e-19 98.6 77 63.6
Nitab4.5_0000171g0170 Nicotiana tabacum HOM05D003369 ORTHO05D004089 1.1e-18 96.3 76 61.8
Duzib114G1008 Durio zibethinus HOM05D003369 ORTHO05D004089 1.5e-18 95.9 67 67.2
Gohir.D06G186800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 1.5e-18 95.9 73 61.6
Thecc.10G184000 Theobroma cacao HOM05D003369 ORTHO05D004089 1.5e-18 95.9 67 65.7
vmacro06898 Vaccinium macrocarpon HOM05D003369 ORTHO05D004089 1.5e-18 95.9 75 60.0
Dinv34494 Davidia involucrata HOM05D003369 ORTHO05D004089 2.0e-18 95.5 75 64.0
Gorai.010G219100 Gossypium raimondii HOM05D003369 ORTHO05D004089 2.0e-18 95.5 74 62.2
Gohir.A05G277600 Gossypium hirsutum HOM05D003369 ORTHO05D004089 4.4e-18 94.4 67 65.7
Hma1.2p1_0264F.1_g106040 Hydrangea macrophylla HOM05D003369 ORTHO05D004089 4.4e-18 94.4 78 62.8
Peaxi162Scf00739g00425 Petunia axillaris HOM05D003369 ORTHO05D004089 4.4e-18 94.4 75 60.0
Nitab4.5_0000375g0250 Nicotiana tabacum HOM05D003369 ORTHO05D004089 5.7e-18 94.0 76 61.8
CiPaw.10G110000 Carya illinoinensis HOM05D003369 ORTHO05D004089 7.4e-18 93.6 77 58.4
Gohir.D05G279200 Gossypium hirsutum HOM05D003369 ORTHO05D004089 7.4e-18 93.6 67 65.7
Gorai.009G292700 Gossypium raimondii HOM05D003369 ORTHO05D004089 7.4e-18 93.6 67 65.7
CiPaw.09G143000 Carya illinoinensis HOM05D003369 ORTHO05D004089 9.7e-18 93.2 77 59.7
TAR633G0919 Trochodendron aralioides HOM05D003369 ORTHO05D004089 9.7e-18 93.2 74 58.1
Rhsim03G0153200 Rhododendron simsii HOM05D003369 ORTHO05D004089 2.2e-17 92.0 75 57.3
THA.LOC104824367 Tarenaya hassleriana HOM05D003369 ORTHO05D004089 2.2e-17 92.0 64 62.5
Eucgr.J00108 Eucalyptus grandis HOM05D003369 ORTHO05D004089 2.8e-17 91.7 65 63.1
Rhsim04G0219100 Rhododendron simsii HOM05D003369 ORTHO05D004089 3.7e-17 91.3 75 57.3
COL.COLO4_19461 Corchorus olitorius HOM05D003369 ORTHO05D004089 4.8e-17 90.9 69 62.3
Sopen06g015200 Solanum pennellii HOM05D003369 ORTHO05D004089 4.8e-17 90.9 74 59.5
PGSC0003DMG400016657 Solanum tuberosum HOM05D003369 ORTHO05D004089 4.8e-17 90.9 74 59.5
CSS0036715 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D004089 6.3e-17 90.5 75 57.3
Solyc06g048890.4 Solanum lycopersicum HOM05D003369 ORTHO05D004089 6.3e-17 90.5 74 59.5
PGR044G0140 Punica granatum HOM05D003369 ORTHO05D004089 8.2e-17 90.1 72 55.6
Ciclev10030740m.g Citrus clementina HOM05D003369 ORTHO05D004089 1.1e-16 89.7 79 58.2
Gohir.A06G179800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 1.1e-16 89.7 73 56.2
Psat0s4462g0240 Pisum sativum HOM05D001932 ORTHO05D004089 1.1e-16 89.7 79 58.2
Potri.013G090500 Populus trichocarpa HOM05D003369 ORTHO05D004089 1.1e-16 89.7 75 57.3
CSS0040829 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D004089 1.4e-16 89.4 67 59.7
CANSAT54G1399 Cannabis sativa HOM05D003369 ORTHO05D004089 1.8e-16 89.0 64 62.5
MD00G1126900 Malus domestica HOM05D003369 ORTHO05D004089 1.8e-16 89.0 75 57.3
Potri.019G059200 Populus trichocarpa HOM05D003369 ORTHO05D004089 1.8e-16 89.0 76 55.3
Cpa.g.sc19.47 Carica papaya HOM05D003369 ORTHO05D004089 2.4e-16 88.6 67 62.7
Actinidia13643 Actinidia chinensis HOM05D003369 ORTHO05D004089 3.1e-16 88.2 75 56.0
Ca_09969_v3 Cicer arietinum L. HOM05D003369 ORTHO05D004089 3.1e-16 88.2 77 58.4
Haze_05901 Corylus avellana HOM05D003369 ORTHO05D004089 3.1e-16 88.2 77 58.4
THA.LOC104814068 Tarenaya hassleriana HOM05D003369 ORTHO05D004089 3.1e-16 88.2 67 61.2
TWI53G1724 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 3.1e-16 88.2 68 60.3
CARHR135820 Cardamine hirsuta HOM05D003369 ORTHO05D004089 4.1e-16 87.8 64 64.1
RcHm_v2.0_Chr4g0447001 Rosa chinensis HOM05D003369 ORTHO05D004089 4.1e-16 87.8 81 56.8
BcaB06g29170 Brassica carinata HOM05D003369 ORTHO05D004089 5.3e-16 87.4 56 71.4
Lj8A53T101 Lonicera japonica HOM05D003369 ORTHO05D004089 5.3e-16 87.4 72 59.7
Atru.chr12.204 Acer truncatum HOM05D003369 ORTHO05D004089 7.0e-16 87.0 81 55.6
Actinidia31631 Actinidia chinensis HOM05D003369 ORTHO05D004089 7.0e-16 87.0 75 54.7
Ah.13g075100 Amaranthus hybridus HOM05D003369 ORTHO05D004089 9.1e-16 86.7 77 55.8
MD13G1002600 Malus domestica HOM05D003369 ORTHO05D004089 9.1e-16 86.7 75 56.0
AL4G38590 Arabidopsis lyrata HOM05D003369 ORTHO05D004089 1.2e-15 86.3 64 62.5
AT2G40730 Arabidopsis thaliana HOM05D003369 ORTHO05D004089 1.2e-15 86.3 64 62.5
Medtr6g086565 Medicago truncatula HOM05D003369 ORTHO05D004089 1.2e-15 86.3 58 69.0
Sabra19G0074300 Salix brachista HOM05D003369 ORTHO05D004089 1.2e-15 86.3 74 55.4
GSVIVG01032663001 Vitis vinifera HOM05D003369 ORTHO05D004089 1.2e-15 86.3 75 57.3
AUR62042224 Chenopodium quinoa HOM05D003369 ORTHO05D004089 1.6e-15 85.9 77 55.8
CAN.G203.55 Capsicum annuum HOM05D003369 ORTHO05D004089 2.0e-15 85.5 67 65.7
Sp4g23040 Schrenkiella parvula HOM05D003369 ORTHO05D004089 2.0e-15 85.5 56 69.6
CDE07G0902 Ceratophyllum demersum HOM05D003369 ORTHO05D004089 2.6e-15 85.1 68 57.4
MBI15_g39391_MAGBIO Magnolia biondii HOM05D003369 ORTHO05D004089 2.6e-15 85.1 73 57.5
Hund05383 Selenicereus undatus HOM05D003369 ORTHO05D004089 2.6e-15 85.1 75 58.7
Manes.10G002000 Manihot esculenta HOM05D003369 ORTHO05D004089 3.5e-15 84.7 77 55.8
Nn5g26838 Nelumbo nucifera HOM05D003369 ORTHO05D004089 3.5e-15 84.7 65 58.5
AUR62037781 Chenopodium quinoa HOM05D003369 ORTHO05D004089 4.5e-15 84.3 77 54.5
Glyma.09G252000 Glycine max HOM05D003369 ORTHO05D004089 4.5e-15 84.3 64 60.9
CDE06G0307 Ceratophyllum demersum HOM05D001225 ORTHO05D001252 5.9e-15 84.0 68 57.4
Prupe.1G349800 Prunus persica HOM05D003369 ORTHO05D004089 7.7e-15 83.6 75 56.0
MSTRG.8884 Avicennia marina HOM05D003369 ORTHO05D004089 1.3e-14 82.8 69 58.0
Lj5g0006652 Lotus japonicus HOM05D003369 ORTHO05D004089 1.3e-14 82.8 66 57.6
VMungo0720G1409 Vigna mungo HOM05D003369 ORTHO05D004089 1.7e-14 82.4 66 56.1
TWI09G0152 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 2.2e-14 82.0 75 52.0
arahy.Tifrunner.gnm1.ann1.ABG2GV Arachis hypogaea HOM05D003369 ORTHO05D004089 3.8e-14 81.3 67 58.2
arahy.Tifrunner.gnm1.ann1.HI4H5F Arachis hypogaea HOM05D003369 ORTHO05D004089 3.8e-14 81.3 67 58.2
DCAR_005880 Daucus carota HOM05D003369 ORTHO05D020257 3.8e-14 81.3 77 55.8
Aa31LG3G1410 Aethionema arabicum HOM05D003369 ORTHO05D004089 6.5e-14 80.5 67 59.7
PGSC0003DMG400011657 Solanum tuberosum HOM05D003369 ORTHO05D004089 6.5e-14 80.5 68 60.3
SGA_v2.0_scaffold327G48760 Striga asiatica HOM05D003369 ORTHO05D004089 8.5e-14 80.1 77 53.2
BcaB01g03521 Brassica carinata HOM05D003369 ORTHO05D004089 1.1e-13 79.7 73 54.8
Phvul.008G055600 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 1.1e-13 79.7 66 54.5
Aqoxy3G00685 Aquilegia oxysepala HOM05D003369 ORTHO05D004089 1.5e-13 79.3 84 47.6
BcaC01g05384 Brassica carinata HOM05D003369 ORTHO05D004089 1.5e-13 79.3 56 62.5
A03p22890 Brassica napus HOM05D003369 ORTHO05D004089 1.5e-13 79.3 56 62.5
BraA03t11513Z Brassica rapa HOM05D003369 ORTHO05D004089 1.5e-13 79.3 56 62.5
Carub.0004s2301 Capsella rubella HOM05D003369 ORTHO05D004089 1.9e-13 79.0 80 52.5
Thhalv10016269m.g Eutrema salsugineum HOM05D003369 ORTHO05D004089 1.9e-13 79.0 56 64.3
VMungo1383G1217 Vigna mungo HOM05D003369 ORTHO05D004089 1.9e-13 79.0 76 47.4
FAN17G2799 Fragaria x ananassa HOM05D003369 ORTHO05D004089 5.5e-13 77.4 77 53.2
Manes.07G142600 Manihot esculenta HOM05D003369 ORTHO05D004089 5.5e-13 77.4 75 50.7
DCAR_007356 Daucus carota HOM05D003369 ORTHO05D004089 7.2e-13 77.0 76 50.0
ECA238G1180 Erigeron canadensis HOM05D003369 ORTHO05D004089 9.4e-13 76.6 58 60.3
Glyma.20G219600 Glycine max HOM05D003369 ORTHO05D004089 9.4e-13 76.6 77 53.2
C03p27140 Brassica napus HOM05D003369 ORTHO05D004089 1.2e-12 76.3 56 60.7
BolC3t15095H Brassica oleracea HOM05D003369 ORTHO05D004089 1.2e-12 76.3 56 60.7
SalBow3G2694 Salvia bowleyana HOM05D003369 ORTHO05D004089 1.2e-12 76.3 59 59.3
ATR1127G027 Amborella trichopoda HOM05D003369 ORTHO05D004089 2.1e-12 75.5 75 49.3
Lalb_Chr02g0149391 Lupinus albus HOM05D003369 ORTHO05D004089 2.1e-12 75.5 81 49.4
FAN07G2686 Fragaria x ananassa HOM05D003369 ORTHO05D004089 2.7e-12 75.1 77 51.9
Phvul.010G077634 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 2.7e-12 75.1 68 54.4
Migut.F00574 Erythranthe guttata HOM05D003369 ORTHO05D004089 3.6e-12 74.7 79 50.6
Sed0008109 Sechium edule HOM05D003369 ORTHO05D004089 3.6e-12 74.7 75 49.3
Glyma.18G240600 Glycine max HOM05D003369 ORTHO05D004089 4.7e-12 74.3 55 61.8
TPR.G35277 Trifolium pratense HOM05D003369 ORTHO05D004089 4.7e-12 74.3 75 52.0
HanXRQChr14g0460671 Helianthus annuus HOM05D003369 ORTHO05D004089 6.1e-12 73.9 63 57.1
ECA232G1960 Erigeron canadensis HOM05D003369 ORTHO05D004089 8.0e-12 73.6 59 57.6
BcaC02g07330 Brassica carinata HOM05D003369 ORTHO05D004089 1.0e-11 73.2 56 64.3
A04p31100 Brassica napus HOM05D003369 ORTHO05D004089 1.0e-11 73.2 56 64.3
C04p68490 Brassica napus HOM05D003369 ORTHO05D004089 1.0e-11 73.2 56 64.3
BolC4t28349H Brassica oleracea HOM05D003369 ORTHO05D004089 1.0e-11 73.2 56 64.3
BraA04t18565Z Brassica rapa HOM05D003369 ORTHO05D004089 1.0e-11 73.2 56 64.3
Lsat_1_v5_gn_2_126361 Lactuca sativa HOM05D003369 ORTHO05D004089 1.4e-11 72.8 75 49.3
PSO017G0651 Papaver somniferum HOM05D003369 ORTHO05D004089 2.3e-11 72.0 65 53.8
PSO170G0385 Papaver somniferum HOM05D003369 ORTHO05D004089 2.3e-11 72.0 65 53.8
FvH4_4g37220 Fragaria vesca HOM05D003369 ORTHO05D004089 5.2e-11 70.9 77 49.4
CsaV3_3G030590 Cucumis sativus L. HOM05D003369 ORTHO05D004089 2.6e-10 68.6 75 45.3
ClCG11G010900 Citrullus lanatus HOM05D003369 ORTHO05D004089 3.3e-10 68.2 75 45.3
MELO3C022652.2 Cucumis melo HOM05D003369 ORTHO05D004089 3.3e-10 68.2 75 45.3
Lsat_1_v5_gn_8_162600 Lactuca sativa HOM05D003369 ORTHO05D004089 5.7e-10 67.4 76 47.4
Medtr1g078370 Medicago truncatula HOM05D003369 ORTHO05D004089 5.7e-10 67.4 77 49.4
Oeu018743.1 Olea europaea HOM05D003369 ORTHO05D004089 1.3e-09 66.2 52 65.4
Lsat_1_v5_gn_8_20221 Lactuca sativa HOM05D003369 ORTHO05D004089 2.2e-09 65.5 75 46.7
Oeu063993.2 Olea europaea HOM05D003369 ORTHO05D004089 6.3e-09 63.9 71 50.7
MSTRG.27258 Avicennia marina HOM05D003369 ORTHO05D004089 1.1e-08 63.2 79 46.8
HanXRQChr15g0493711 Helianthus annuus HOM05D003369 ORTHO05D004089 1.1e-08 63.2 69 52.2
SEGI_10703 Sequoiadendron giganteum HOM05D003369 ORTHO05D004089 5.3e-08 60.8 64 50.0
Lsat_1_v5_gn_8_135680 Lactuca sativa HOM05D003369 ORTHO05D004089 7.0e-08 60.5 75 42.7
Nn2g10283 Nelumbo nucifera HOM05D003369 ORTHO05D004089 1.2e-07 59.7 59 45.8
Psat3g198120 Pisum sativum HOM05D003369 ORTHO05D004089 3.5e-07 58.2 51 62.7
Solyc05g052200.4 Solanum lycopersicum HOM05D003369 ORTHO05D004089 3.5e-07 58.2 44 63.6
Sopen05g030740 Solanum pennellii HOM05D003369 ORTHO05D004089 3.5e-07 58.2 44 63.6
HPP92_018085 Vanilla planifolia HOM05D003369 ORTHO05D004089 3.5e-07 58.2 66 48.5
unitig_0.g2517 Utricularia gibba HOM05D003369 ORTHO05D004089 4.5e-07 57.8 83 44.6
Lalb_Chr06g0168441 Lupinus albus HOM05D003369 ORTHO05D004089 1.7e-06 55.8 92 37.0
Zm00001eb368920 Zea mays HOM05D003369 ORTHO05D004089 2.9e-06 55.1 42 61.9
BcaC02g12730 Brassica carinata HOM05D003369 ORTHO05D004089 3.8e-06 54.7 46 54.3
Lsat_1_v5_gn_4_53561 Lactuca sativa HOM05D003369 ORTHO05D004089 3.8e-06 54.7 71 46.5
Zm00001eb149610 Zea mays HOM05D003369 ORTHO05D004089 3.8e-06 54.7 61 47.5


User provided reference genes

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