Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0004030 Simmondsia chinensis HOM05D005667 ORTHO05D007299 1.4e-231 805.8 390 100.0
Sc05g0001380 Simmondsia chinensis HOM05D005667 ORTHO05D007299 4.4e-172 608.2 301 96.3
Hund18138 Selenicereus undatus HOM05D005667 ORTHO05D007299 5.3e-170 601.3 393 72.3
Ah.08g213150 Amaranthus hybridus HOM05D005667 ORTHO05D007299 8.8e-165 583.9 397 70.5
QL12p027280 Quercus lobata HOM05D005667 ORTHO05D007299 5.0e-160 568.2 397 67.8
CANSAT25G0856 Cannabis sativa HOM05D005667 ORTHO05D007299 6.6e-160 567.8 393 68.4
Dinv33042 Davidia involucrata HOM05D005667 ORTHO05D007299 2.8e-158 562.4 389 69.4
Atru.chr5.1169 Acer truncatum HOM05D005667 ORTHO05D007299 5.2e-157 558.1 392 69.1
Cfa005935 Carpinus fangiana HOM05D005667 ORTHO05D007299 1.5e-156 556.6 391 67.8
MD03G1286100 Malus domestica HOM05D005667 ORTHO05D007299 1.7e-155 553.1 392 68.1
Phvul.001G206300 Phaseolus vulgaris HOM05D005667 ORTHO05D007299 7.0e-154 547.7 389 66.6
VMungo1383G3519 Vigna mungo HOM05D005667 ORTHO05D007299 1.2e-153 547.0 389 65.8
Actinidia32226 Actinidia chinensis HOM05D005667 ORTHO05D007299 2.0e-153 546.2 393 66.9
AUR62008656 Chenopodium quinoa HOM05D005667 ORTHO05D007299 3.5e-153 545.4 390 67.2
MD11G1306000 Malus domestica HOM05D005667 ORTHO05D007299 7.8e-153 544.3 392 67.3
Hma1.2p1_0209F.1_g088490 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 1.7e-152 543.1 392 67.3
arahy.Tifrunner.gnm1.ann1.AQSE8X Arachis hypogaea HOM05D005667 ORTHO05D007299 6.6e-152 541.2 393 64.6
Psat3g021960 Pisum sativum HOM05D005667 ORTHO05D007299 6.6e-152 541.2 397 65.7
TAR627G0762 Trochodendron aralioides HOM05D005667 ORTHO05D007299 6.6e-152 541.2 393 67.4
Haze_04910 Corylus avellana HOM05D005667 ORTHO05D007299 8.6e-152 540.8 422 63.3
TAR365G0445 Trochodendron aralioides HOM05D005667 ORTHO05D007299 1.9e-151 539.7 393 67.4
arahy.Tifrunner.gnm1.ann1.P0XQ2X Arachis hypogaea HOM05D005667 ORTHO05D007299 2.5e-151 539.3 393 64.1
AUR62033112 Chenopodium quinoa HOM05D005667 ORTHO05D007299 3.3e-151 538.9 392 68.1
DCAR_005798 Daucus carota HOM05D005667 ORTHO05D007299 7.3e-151 537.7 393 65.1
Ca_09151_v3 Cicer arietinum L. HOM05D005667 ORTHO05D007299 9.5e-151 537.3 396 64.9
vmacro14998 Vaccinium macrocarpon HOM05D005667 ORTHO05D007299 9.5e-151 537.3 398 66.1
Lalb_Chr18g0047071 Lupinus albus HOM05D005667 ORTHO05D007299 1.2e-150 537.0 393 65.4
MELO3C017966.2 Cucumis melo HOM05D005667 ORTHO05D007299 2.1e-150 536.2 393 63.6
TPR.G9636 Trifolium pratense HOM05D005667 ORTHO05D007299 2.1e-150 536.2 391 65.0
QL12p026655 Quercus lobata HOM05D005667 ORTHO05D007299 2.8e-150 535.8 397 65.2
Glyma.03G213700 Glycine max HOM05D005667 ORTHO05D007299 4.7e-150 535.0 392 64.8
Lj1g0013419 Lotus japonicus HOM05D005667 ORTHO05D007299 4.7e-150 535.0 395 64.1
EL10Ac7g17451 Beta vulgaris HOM05D005667 ORTHO05D007299 6.1e-150 534.6 390 67.7
CsaV3_4G000700 Cucumis sativus L. HOM05D005667 ORTHO05D007299 3.1e-149 532.3 393 63.4
Glyma.19G210500 Glycine max HOM05D005667 ORTHO05D007299 3.1e-149 532.3 392 64.0
Lalb_Chr04g0259821 Lupinus albus HOM05D005667 ORTHO05D007299 3.1e-149 532.3 390 65.4
Medtr7g108870 Medicago truncatula HOM05D005667 ORTHO05D007299 4.0e-149 531.9 387 66.7
Medtr8g058590 Medicago truncatula HOM05D005667 ORTHO05D007299 4.0e-149 531.9 387 66.7
HanXRQChr04g0118041 Helianthus annuus HOM05D005667 ORTHO05D007299 8.9e-149 530.8 393 64.6
Sed0014922 Sechium edule HOM05D005667 ORTHO05D007299 9.8e-148 527.3 394 62.4
FvH4_2g25530 Fragaria vesca HOM05D005667 ORTHO05D007299 1.3e-147 526.9 372 67.7
Nitab4.5_0002469g0040 Nicotiana tabacum HOM05D005667 ORTHO05D007299 4.9e-147 525.0 391 64.7
THA.LOC104817511 Tarenaya hassleriana HOM05D005667 ORTHO05D007299 2.4e-146 522.7 397 64.0
Nn4g25820 Nelumbo nucifera HOM05D005667 ORTHO05D007299 7.0e-146 521.2 375 66.7
Solyc09g075000.3 Solanum lycopersicum HOM05D005667 ORTHO05D007299 3.0e-144 515.8 391 64.5
AT2G47790 Arabidopsis thaliana HOM05D005667 ORTHO05D007299 8.6e-144 514.2 397 63.2
Sp4g29720 Schrenkiella parvula HOM05D005667 ORTHO05D007299 8.6e-144 514.2 394 64.7
TWI23G0451 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 2.5e-143 512.7 387 64.1
AL4G47370 Arabidopsis lyrata HOM05D005667 ORTHO05D007299 3.3e-143 512.3 394 64.0
TWI59G1070 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 9.5e-143 510.8 395 63.8
CiPaw.07G107100 Carya illinoinensis HOM05D005667 ORTHO05D007299 1.6e-142 510.0 392 62.2
Lsat_1_v5_gn_8_53441 Lactuca sativa HOM05D005667 ORTHO05D007299 1.6e-142 510.0 402 62.4
Sopen09g029820 Solanum pennellii HOM05D005667 ORTHO05D007299 1.6e-142 510.0 386 65.3
PGSC0003DMG400011397 Solanum tuberosum HOM05D005667 ORTHO05D007299 3.6e-142 508.8 388 64.9
COL.COLO4_23365 Corchorus olitorius HOM05D005667 ORTHO05D007299 1.4e-141 506.9 391 63.4
FAN20G0834 Fragaria x ananassa HOM05D005667 ORTHO05D007299 1.4e-141 506.9 393 63.1
SGA_v2.0_scaffold2G01401 Striga asiatica HOM05D005667 ORTHO05D007299 2.3e-141 506.1 390 62.8
Thecc.01G298400 Theobroma cacao HOM05D005667 ORTHO05D007299 4.0e-141 505.4 391 62.4
Carub.0004s3050 Capsella rubella HOM05D005667 ORTHO05D007299 5.2e-141 505.0 392 64.0
GSVIVG01027987001 Vitis vinifera HOM05D005667 ORTHO05D007299 2.0e-140 503.1 340 69.4
Ciclev10020175m.g Citrus clementina HOM05D005667 ORTHO05D007299 3.4e-140 502.3 444 57.4
CSS0019258 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 1.3e-139 500.4 393 63.9
Sabra02G0153700 Salix brachista HOM05D005667 ORTHO05D007299 6.4e-139 498.0 420 61.0
Aqoxy2G02973 Aquilegia oxysepala HOM05D005667 ORTHO05D007299 4.1e-138 495.4 378 63.5
Cc01_g20730 Coffea canephora HOM05D005667 ORTHO05D007299 5.4e-138 495.0 442 56.3
Manes.01G217700 Manihot esculenta HOM05D005667 ORTHO05D007299 2.7e-137 492.7 391 63.7
Potri.002G205600 Populus trichocarpa HOM05D005667 ORTHO05D007299 2.7e-137 492.7 393 63.4
CARHR143160 Cardamine hirsuta HOM05D005667 ORTHO05D007299 7.8e-137 491.1 394 63.2
Duzib138G1280 Durio zibethinus HOM05D005667 ORTHO05D007299 1.3e-136 490.3 389 61.7
Prupe.8G259400 Prunus persica HOM05D005667 ORTHO05D007299 2.3e-136 489.6 344 67.4
Migut.D00204 Erythranthe guttata HOM05D005667 ORTHO05D007299 6.6e-136 488.0 392 61.2
Nitab4.5_0005515g0060 Nicotiana tabacum HOM05D005667 ORTHO05D007299 8.6e-136 487.6 391 61.9
Thhalv10001494m.g Eutrema salsugineum HOM05D005667 ORTHO05D007299 1.5e-135 486.9 391 62.9
CDE08G0318 Ceratophyllum demersum HOM05D005667 ORTHO05D007299 5.6e-135 485.0 391 59.6
MSTRG.21625 Avicennia marina HOM05D005667 ORTHO05D007299 7.3e-135 484.6 388 61.9
ATR0796G332 Amborella trichopoda HOM05D005667 ORTHO05D007299 8.1e-134 481.1 388 60.3
Eucgr.K03468 Eucalyptus grandis HOM05D005667 ORTHO05D007299 8.1e-134 481.1 382 61.0
PSO210G4429 Papaver somniferum HOM05D005667 ORTHO05D007299 3.4e-132 475.7 393 61.3
Lj1C26T7 Lonicera japonica HOM05D005667 ORTHO05D007299 5.8e-132 474.9 319 69.0
Peaxi162Scf00001g00492 Petunia axillaris HOM05D005667 ORTHO05D007299 1.7e-131 473.4 366 62.6
Potri.014G130600 Populus trichocarpa HOM05D005667 ORTHO05D007299 1.7e-131 473.4 392 61.5
Aa31LG1G29130 Aethionema arabicum HOM05D005667 ORTHO05D007299 1.1e-130 470.7 397 59.7
ClCG10G010830 Citrullus lanatus HOM05D005667 ORTHO05D007299 1.9e-130 469.9 393 58.5
SalBow3G0511 Salvia bowleyana HOM05D005667 ORTHO05D007299 7.1e-130 468.0 372 60.2
PSO170G6061 Papaver somniferum HOM05D005667 ORTHO05D007299 1.2e-126 457.2 392 59.2
BcaB06g29498 Brassica carinata HOM05D005667 ORTHO05D007299 3.6e-126 455.7 412 57.0
Sabra14G0097200 Salix brachista HOM05D005667 ORTHO05D007299 6.2e-126 454.9 391 59.3
C04p72980 Brassica napus HOM05D005667 ORTHO05D007299 1.1e-125 454.1 391 58.8
BolC4t28779H Brassica oleracea HOM05D005667 ORTHO05D007299 1.4e-125 453.8 391 59.1
A04p35070 Brassica napus HOM05D005667 ORTHO05D007299 1.2e-124 450.7 391 58.3
SHI15190 Sapria himalayana HOM05D005667 ORTHO05D007299 1.2e-124 450.7 380 58.2
BcaC02g06992 Brassica carinata HOM05D005667 ORTHO05D007299 5.8e-124 448.4 389 57.6
Gohir.D12G135100 Gossypium hirsutum HOM05D005667 ORTHO05D007299 7.6e-124 448.0 394 57.4
PGR044G1684 Punica granatum HOM05D005667 ORTHO05D007299 7.6e-124 448.0 396 57.6
Hma1.2p1_0209F.1_g088500 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 9.9e-124 447.6 428 54.2
HPP92_027132 Vanilla planifolia HOM05D005667 ORTHO05D007299 1.7e-123 446.8 371 59.6
BraA04t18943Z Brassica rapa HOM05D005667 ORTHO05D007299 3.8e-123 445.7 392 57.7
Gohir.A12G131200 Gossypium hirsutum HOM05D005667 ORTHO05D007299 7.8e-121 438.0 394 56.3
CSS0024566 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 3.0e-120 436.0 392 55.9
Gorai.008G146100 Gossypium raimondii HOM05D005667 ORTHO05D007299 1.9e-119 433.3 393 56.5
Rhsim01G0284200 Rhododendron simsii HOM05D005667 ORTHO05D007299 1.9e-119 433.3 397 56.4
CSS0050073 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 2.5e-119 433.0 392 55.6
Actinidia24829 Actinidia chinensis HOM05D005667 ORTHO05D007299 6.9e-117 424.9 394 56.1
unitig_0.g1174 Utricularia gibba HOM05D005667 ORTHO05D007299 6.9e-117 424.9 423 52.0
SEGI_23788 Sequoiadendron giganteum HOM05D005667 ORTHO05D007299 1.3e-115 420.6 382 56.3
ECA236G1571 Erigeron canadensis HOM05D005667 ORTHO05D007299 3.3e-111 406.0 341 57.5
Cpa.g.sc9.222 Carica papaya HOM05D005667 ORTHO05D007299 4.5e-100 369.0 279 64.5
Dinv19706 Davidia involucrata HOM05D005667 ORTHO05D007299 3.5e-97 359.4 270 65.9
Medtr8g058557 Medicago truncatula HOM05D005667 ORTHO05D007299 4.3e-95 352.4 235 72.3
Mapoly0153s0027 Marchantia polymorpha HOM05D005667 ORTHO05D007299 6.1e-89 332.0 380 45.5
Pp3c11_14960 Physcomitrium patens HOM05D005667 ORTHO05D007299 1.8e-85 320.5 383 46.5
Pp3c2_26100 Physcomitrium patens HOM05D005667 ORTHO05D007299 3.4e-84 316.2 378 45.8
SMO329G0065 Selaginella moellendorffii HOM05D005667 ORTHO05D007299 1.6e-81 307.4 348 47.4
BcaB06g29495 Brassica carinata HOM05D005667 ORTHO05D007299 3.0e-80 303.1 278 55.4
HPP92_021590 Vanilla planifolia HOM05D005667 ORTHO05D007299 2.4e-77 293.5 227 63.0
RcHm_v2.0_Chr6g0293741 Rosa chinensis HOM05D005667 ORTHO05D007299 1.5e-71 274.2 200 64.0
Pp3c11_15090 Physcomitrium patens HOM05D005667 ORTHO05D007299 1.7e-70 270.8 298 48.0
Zm00001eb157470 Zea mays HOM05D005667 ORTHO05D007299 2.6e-63 246.9 204 58.3
AagrBONN_evm.TU.Sc2ySwM_344.2785 Anthoceros agrestis HOM05D005667 ORTHO05D007299 1.6e-57 227.6 234 48.3
Oeu011452.2 Olea europaea HOM05D005667 ORTHO05D007299 2.6e-55 220.3 156 66.0
Nn3g21456 Nelumbo nucifera HOM05D005667 ORTHO05D007299 5.7e-55 219.2 319 41.1
Cre03.g178050 Chlamydomonas reinhardtii HOM05D005667 ORTHO05D007299 2.4e-53 213.8 354 38.1
Actinidia21054 Actinidia chinensis HOM05D005667 ORTHO05D007299 6.1e-49 199.1 153 58.8
Os12g0294100 Oryza sativa ssp. japonica HOM05D005667 ORTHO05D007299 3.4e-47 193.4 189 52.9
PRCOL_00003266 Prasinoderma coloniale HOM05D005667 ORTHO05D007299 4.4e-39 166.4 331 33.8
RcHm_v2.0_Chr6g0293751 Rosa chinensis HOM05D005667 ORTHO05D007299 2.2e-38 164.1 119 67.2
BcaC02g06993 Brassica carinata HOM05D005667 ORTHO05D007299 2.7e-36 157.1 125 63.2
MCO09G319 Micromonas commoda HOM05D005667 ORTHO05D007299 2.1e-33 147.5 350 33.1
Migut.D00125 Erythranthe guttata HOM05D005667 ORTHO05D007299 9.5e-26 122.1 177 40.1
CBR_g34279 Chara braunii HOM05D005667 ORTHO05D007299 3.6e-25 120.2 149 46.3
Migut.G00109 Erythranthe guttata HOM05D005667 ORTHO05D007299 1.7e-19 101.3 171 35.7
CBR_g31107 Chara braunii HOM05D000019 ORTHO05D000048 6.0e-12 76.3 171 31.0
CBR_g31109 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-11 75.5 69 47.8
Actinidia13473 Actinidia chinensis HOM05D005667 ORTHO05D000474 1.3e-06 58.5 70 44.3
Prupe.8G259600 Prunus persica HOM05D005667 ORTHO05D007299 2.9e-06 57.4 46 63.0
arahy.Tifrunner.gnm1.ann1.DS860L Arachis hypogaea HOM05D004669 ORTHO05D005767 3.8e-06 57.0 220 25.0
arahy.Tifrunner.gnm1.ann1.L4R828 Arachis hypogaea HOM05D004669 ORTHO05D005767 3.8e-06 57.0 220 25.0
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 3.8e-06 57.0 166 25.9
Thhalv10006752m.g Eutrema salsugineum HOM05D004669 ORTHO05D005767 4.9e-06 56.6 150 26.7


User provided reference genes

Program Settings