Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0003970 Simmondsia chinensis HOM05D006871 ORTHO05D008544 1.7e-105 386.0 189 100.0
EL10Ac7g17459 Beta vulgaris HOM05D006871 ORTHO05D008544 2.0e-82 309.3 194 78.4
Hund18131 Selenicereus undatus HOM05D006871 ORTHO05D008544 1.7e-81 306.2 232 68.1
AUR62033118 Chenopodium quinoa HOM05D006871 ORTHO05D008544 2.3e-78 295.8 195 75.4
vmacro02459 Vaccinium macrocarpon HOM05D006871 ORTHO05D008544 3.4e-77 292.0 190 73.7
Dinv33046 Davidia involucrata HOM05D006871 ORTHO05D008544 3.7e-76 288.5 193 75.1
CSS0020652 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 4.9e-76 288.1 188 74.5
CSS0035923 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 1.4e-75 286.6 188 73.9
Cpa.g.sc9.224 Carica papaya HOM05D000121 ORTHO05D000102 7.0e-75 284.3 198 68.7
Rhsim13G0011300 Rhododendron simsii HOM05D000121 ORTHO05D000102 1.0e-73 280.4 188 73.9
TAR633G1007 Trochodendron aralioides HOM05D006871 ORTHO05D008544 1.0e-73 280.4 193 73.6
Cc09_g05510 Coffea canephora HOM05D006871 ORTHO05D008544 1.7e-73 279.6 185 74.6
Hma1.2p1_0491F.1_g164460 Hydrangea macrophylla HOM05D006871 ORTHO05D008544 1.7e-73 279.6 189 74.1
Duzib133G1442 Durio zibethinus HOM05D006871 ORTHO05D008544 2.3e-73 279.3 191 73.3
Haze_04913 Corylus avellana HOM05D006871 ORTHO05D008544 5.0e-73 278.1 198 71.2
Duzib138G1907 Durio zibethinus HOM05D006871 ORTHO05D008544 5.0e-73 278.1 192 73.4
Gohir.A08G101400 Gossypium hirsutum HOM05D006871 ORTHO05D008544 5.0e-73 278.1 194 72.7
PGR119G1195 Punica granatum HOM05D006871 ORTHO05D008544 5.0e-73 278.1 201 71.1
PGR119G1688 Punica granatum HOM05D006871 ORTHO05D008544 5.0e-73 278.1 201 71.1
Atru.chr5.1162 Acer truncatum HOM05D006871 ORTHO05D008544 8.6e-73 277.3 190 71.1
Lsat_1_v5_gn_8_53460 Lactuca sativa HOM05D006871 ORTHO05D008544 8.6e-73 277.3 188 71.3
Actinidia24342 Actinidia chinensis HOM05D006871 ORTHO05D008544 1.1e-72 276.9 189 72.0
Cfa005931 Carpinus fangiana HOM05D006871 ORTHO05D008544 1.1e-72 276.9 196 71.9
Gohir.D08G084900 Gossypium hirsutum HOM05D006871 ORTHO05D008544 1.1e-72 276.9 194 72.2
SGA_v2.0_scaffold1G00373 Striga asiatica HOM05D001198 ORTHO05D008544 1.5e-72 276.6 186 71.5
MSTRG.18162 Avicennia marina HOM05D006871 ORTHO05D008544 2.5e-72 275.8 187 71.7
COL.COLO4_23360 Corchorus olitorius HOM05D006871 ORTHO05D008544 4.3e-72 275.0 185 74.1
SalBow3G3208 Salvia bowleyana HOM05D006871 ORTHO05D008544 5.6e-72 274.6 187 71.7
Thecc.01G298700 Theobroma cacao HOM05D006871 ORTHO05D008544 5.6e-72 274.6 191 72.8
Actinidia32224 Actinidia chinensis HOM05D006871 ORTHO05D008544 9.5e-72 273.9 190 70.5
Oeu032105.1 Olea europaea HOM05D006871 ORTHO05D008544 9.5e-72 273.9 190 71.1
Potri.014G130400 Populus trichocarpa HOM05D006871 ORTHO05D008544 1.2e-71 273.5 190 72.6
BcaC05g24587 Brassica carinata HOM05D006871 ORTHO05D008544 1.6e-71 273.1 192 68.2
C05p01490 Brassica napus HOM05D006871 ORTHO05D008544 1.6e-71 273.1 192 68.2
BraA10t42428Z Brassica rapa HOM05D006871 ORTHO05D008544 1.6e-71 273.1 192 68.2
Sabra14G0097000 Salix brachista HOM05D006871 ORTHO05D008544 1.6e-71 273.1 190 72.6
BolC5t28931H Brassica oleracea HOM05D006871 ORTHO05D008544 4.7e-71 271.6 192 67.7
Thhalv10008837m.g Eutrema salsugineum HOM05D006871 ORTHO05D008544 4.7e-71 271.6 192 68.2
HanXRQChr06g0163831 Helianthus annuus HOM05D006871 ORTHO05D008544 4.7e-71 271.6 189 71.4
A10p01520 Brassica napus HOM05D006871 ORTHO05D008544 6.1e-71 271.2 192 67.7
Lj2A1192T47 Lonicera japonica HOM05D006871 ORTHO05D008544 8.0e-71 270.8 188 73.9
Manes.05G063100 Manihot esculenta HOM05D006871 ORTHO05D008544 4.0e-70 268.5 190 70.0
Ciclev10022428m.g Citrus clementina HOM05D006871 ORTHO05D008544 5.2e-70 268.1 190 71.1
Nitab4.5_0002469g0070 Nicotiana tabacum HOM05D006871 ORTHO05D008544 5.2e-70 268.1 196 69.4
Nitab4.5_0011307g0010 Nicotiana tabacum HOM05D006871 ORTHO05D008544 5.2e-70 268.1 193 69.9
THA.LOC104801274 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 1.2e-69 266.9 193 66.8
Prupe.8G259900 Prunus persica HOM05D006871 ORTHO05D008544 1.5e-69 266.5 189 70.9
Sp1g01860 Schrenkiella parvula HOM05D006871 ORTHO05D008544 1.5e-69 266.5 192 67.2
unitig_0.g659 Utricularia gibba HOM05D006871 ORTHO05D008544 2.0e-69 266.2 186 69.4
AT1G02870 Arabidopsis thaliana HOM05D006871 ORTHO05D008544 2.6e-69 265.8 193 66.3
THA.LOC104815930 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 2.6e-69 265.8 192 67.2
CARHR002210 Cardamine hirsuta HOM05D006871 ORTHO05D008544 5.8e-69 264.6 192 66.1
MELO3C016009.2 Cucumis melo HOM05D006871 ORTHO05D008544 7.5e-69 264.2 192 69.8
TWI14G0013 Tripterygium wilfordii HOM05D006871 ORTHO05D008544 7.5e-69 264.2 188 70.2
BcaB03g15758 Brassica carinata HOM05D006871 ORTHO05D008544 9.8e-69 263.8 193 67.4
CiPaw.07G107300 Carya illinoinensis HOM05D006871 ORTHO05D008544 9.8e-69 263.8 193 69.4
PGSC0003DMG400011375 Solanum tuberosum HOM05D006871 ORTHO05D008544 9.8e-69 263.8 196 68.4
MD11G1313700 Malus domestica HOM05D006871 ORTHO05D008544 1.7e-68 263.1 197 69.0
Solyc09g075030.3 Solanum lycopersicum HOM05D006871 ORTHO05D008544 3.7e-68 261.9 197 68.0
ClCG09G005940 Citrullus lanatus HOM05D006871 ORTHO05D008544 4.9e-68 261.5 196 68.4
Aa31LG1G9720 Aethionema arabicum HOM05D006871 ORTHO05D008544 6.4e-68 261.2 192 65.6
AL1G12280 Arabidopsis lyrata HOM05D006871 ORTHO05D008544 1.1e-67 260.4 192 65.6
GSVIVG01027991001 Vitis vinifera HOM05D006871 ORTHO05D008544 1.1e-67 260.4 195 67.2
CsaV3_7G029180 Cucumis sativus L. HOM05D006871 ORTHO05D008544 1.4e-67 260.0 194 68.0
Gorai.004G089300 Gossypium raimondii HOM05D006871 ORTHO05D008544 1.4e-67 260.0 227 61.7
Peaxi162Scf00001g00482 Petunia axillaris HOM05D006871 ORTHO05D008544 1.9e-67 259.6 189 68.8
Eucgr.H01153 Eucalyptus grandis HOM05D006871 ORTHO05D008544 4.1e-67 258.5 204 65.2
AUR62008650 Chenopodium quinoa HOM05D006871 ORTHO05D008544 5.4e-67 258.1 278 52.9
Migut.D00207 Erythranthe guttata HOM05D006871 ORTHO05D008544 7.0e-67 257.7 187 68.4
Sopen09g029850 Solanum pennellii HOM05D006871 ORTHO05D008544 7.0e-67 257.7 197 67.0
Carub.0001s0199 Capsella rubella HOM05D006871 ORTHO05D008544 1.6e-66 256.5 192 65.1
Sed0022553 Sechium edule HOM05D006871 ORTHO05D008544 1.6e-66 256.5 197 66.5
CANSAT25G1157 Cannabis sativa HOM05D006871 ORTHO05D008544 2.0e-66 256.1 197 65.5
CANSAT25G3267 Cannabis sativa HOM05D006871 ORTHO05D008544 2.0e-66 256.1 197 65.5
PSO210G5360 Papaver somniferum HOM05D006871 ORTHO05D008544 4.6e-66 255.0 193 68.9
PSO832G2873 Papaver somniferum HOM05D006871 ORTHO05D008544 4.6e-66 255.0 193 68.9
ECA236G5112 Erigeron canadensis HOM05D006871 ORTHO05D008544 1.3e-65 253.4 188 68.1
C08p00260 Brassica napus HOM05D006871 ORTHO05D008544 1.7e-65 253.1 194 65.5
Aqoxy5G00741 Aquilegia oxysepala HOM05D006871 ORTHO05D008544 2.3e-65 252.7 189 66.1
BolC8t46828H Brassica oleracea HOM05D006871 ORTHO05D008544 3.9e-65 251.9 194 64.9
Lalb_Chr18g0047051 Lupinus albus HOM05D006871 ORTHO05D008544 6.6e-65 251.1 191 66.0
RcHm_v2.0_Chr6g0293791 Rosa chinensis HOM05D006871 ORTHO05D008544 4.3e-64 248.4 193 66.3
CDE05G0468 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 8.0e-63 244.2 187 65.2
QL12p027406 Quercus lobata HOM05D006871 ORTHO05D008544 8.0e-63 244.2 182 68.7
CAN.G339.16 Capsicum annuum HOM05D006871 ORTHO05D008544 1.8e-62 243.0 187 67.9
arahy.Tifrunner.gnm1.ann1.K3SJ5I Arachis hypogaea HOM05D006871 ORTHO05D008544 4.0e-62 241.9 190 63.2
arahy.Tifrunner.gnm1.ann1.KXN2DA Arachis hypogaea HOM05D006871 ORTHO05D008544 6.8e-62 241.1 188 63.8
CiPaw.08G096300 Carya illinoinensis HOM05D006871 ORTHO05D008544 6.4e-60 234.6 189 64.6
ATR0796G034 Amborella trichopoda HOM05D006871 ORTHO05D008544 1.3e-57 226.9 189 61.4
FvH4_2g25580 Fragaria vesca HOM05D006871 ORTHO05D008544 1.9e-56 223.0 193 60.6
FAN20G2591 Fragaria x ananassa HOM05D006871 ORTHO05D008544 7.3e-56 221.1 193 60.1
FAN27G2794 Fragaria x ananassa HOM05D006871 ORTHO05D008544 1.6e-55 219.9 193 60.1
Lj1g0003126 Lotus japonicus HOM05D006871 ORTHO05D008544 8.1e-55 217.6 194 62.4
VMungo0720G2524 Vigna mungo HOM05D006871 ORTHO05D008544 4.0e-54 215.3 190 60.5
Nn3g21461 Nelumbo nucifera HOM05D006871 ORTHO05D008544 2.6e-53 212.6 153 70.6
Glyma.02G155400 Glycine max HOM05D006871 ORTHO05D008544 9.9e-53 210.7 190 57.9
Medtr1g088670 Medicago truncatula HOM05D006871 ORTHO05D008544 9.9e-53 210.7 191 60.7
Glyma.10G018900 Glycine max HOM05D006871 ORTHO05D008544 2.2e-52 209.5 189 58.2
Phvul.007G143800 Phaseolus vulgaris HOM05D006871 ORTHO05D008544 6.4e-52 208.0 190 57.9
Os05g0367100 Oryza sativa ssp. japonica HOM05D006871 ORTHO05D008544 1.2e-50 203.8 185 58.9
Psat6g165000 Pisum sativum HOM05D006871 ORTHO05D008544 2.1e-50 203.0 190 58.4
Ca_10345_v3 Cicer arietinum L. HOM05D006871 ORTHO05D008544 2.7e-50 202.6 190 57.4
HPP92_013720 Vanilla planifolia HOM05D006871 ORTHO05D008544 7.8e-50 201.1 183 57.4
Zm00001eb285510 Zea mays HOM05D006871 ORTHO05D008544 1.0e-49 200.7 181 58.6
FAN24G1547 Fragaria x ananassa HOM05D006871 ORTHO05D008544 1.5e-48 196.8 184 57.6
BcaC07g36990 Brassica carinata HOM05D006871 ORTHO05D008544 8.1e-47 191.0 148 62.2
MBI19_g13201_MAGBIO Magnolia biondii HOM05D006871 ORTHO05D008544 2.7e-34 149.4 114 66.7
Pp3c25_320 Physcomitrium patens HOM05D006871 ORTHO05D008544 2.7e-34 149.4 184 48.4
AagrBONN_evm.TU.Sc2ySwM_117.3922 Anthoceros agrestis HOM05D006871 ORTHO05D008544 2.3e-33 146.4 180 44.4
DCAR_002824 Daucus carota HOM05D006871 ORTHO05D008544 6.2e-31 138.3 111 62.2
CDE11G0846 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 2.6e-29 132.9 111 62.2
Mapoly0043s0113 Marchantia polymorpha HOM05D006871 ORTHO05D008544 6.4e-28 128.3 179 40.8
Psat1g156280 Pisum sativum HOM05D006871 ORTHO05D008544 4.2e-19 99.0 117 51.3
MD05G1198200 Malus domestica HOM05D006871 ORTHO05D008544 2.8e-15 86.3 54 74.1
Cre17.g726650 Chlamydomonas reinhardtii HOM05D006871 ORTHO05D008544 1.8e-14 83.6 186 32.3
CBR_g19096 Chara braunii HOM05D006871 ORTHO05D008544 3.4e-13 79.3 77 51.9
Nitab4.5_0000119g0320 Nicotiana tabacum HOM05D006871 ORTHO05D008544 4.5e-13 79.0 49 71.4
MD03G1286500 Malus domestica HOM05D006871 ORTHO05D008544 1.3e-09 67.4 38 81.6
MCO15G582 Micromonas commoda HOM05D006871 ORTHO05D008544 8.7e-09 64.7 195 29.7
RcHm_v2.0_Chr2g0134071 Rosa chinensis HOM05D006871 ORTHO05D008544 5.7e-08 62.0 58 56.9


User provided reference genes

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