Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0003880 Simmondsia chinensis HOM05D007298 ORTHO05D009226 6.3e-160 567.4 286 100.0
EL10Ac4g07728 Beta vulgaris HOM05D007298 ORTHO05D009226 6.9e-58 228.4 263 54.4
Thecc.03G118900 Theobroma cacao HOM05D007298 ORTHO05D009226 1.8e-53 213.8 308 46.8
AUR62008624 Chenopodium quinoa HOM05D007298 ORTHO05D009226 1.9e-52 210.3 253 51.4
CiPaw.13G179900 Carya illinoinensis HOM05D007298 ORTHO05D009226 2.4e-50 203.4 307 47.2
Lalb_Chr16g0383911 Lupinus albus HOM05D007298 ORTHO05D009226 4.1e-50 202.6 294 46.6
Lj4g0005920 Lotus japonicus HOM05D007298 ORTHO05D009226 6.9e-50 201.8 293 45.1
Duzib205G1649 Durio zibethinus HOM05D007298 ORTHO05D009226 1.2e-49 201.1 304 46.7
TAR623G1587 Trochodendron aralioides HOM05D007298 ORTHO05D009226 2.6e-49 199.9 287 46.3
Cfa009528 Carpinus fangiana HOM05D007298 ORTHO05D009226 3.4e-49 199.5 311 46.0
AUR62033147 Chenopodium quinoa HOM05D007298 ORTHO05D009226 1.3e-48 197.6 241 50.6
COL.COLO4_37432 Corchorus olitorius HOM05D007298 ORTHO05D009226 1.7e-48 197.2 317 43.2
Aqoxy2G04036 Aquilegia oxysepala HOM05D007298 ORTHO05D009226 6.5e-48 195.3 292 45.5
Ah.08g213460 Amaranthus hybridus HOM05D007298 ORTHO05D009226 1.1e-47 194.5 293 44.4
CSS0015764 Camellia sinensis var. sinensis HOM05D007298 ORTHO05D009226 2.5e-47 193.4 290 45.9
Gohir.A12G186800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 2.5e-47 193.4 298 43.0
Gohir.D12G189800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 3.2e-47 193.0 298 43.3
vmacro16084 Vaccinium macrocarpon HOM05D007298 ORTHO05D009226 7.2e-47 191.8 292 46.9
Gorai.008G203600 Gossypium raimondii HOM05D007298 ORTHO05D009226 1.2e-46 191.0 298 43.0
Cc11_g17470 Coffea canephora HOM05D007298 ORTHO05D009226 1.6e-46 190.7 305 43.9
Hma1.2p1_1436F.1_g283160 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 1.6e-46 190.7 291 46.7
Lalb_Chr09g0327771 Lupinus albus HOM05D007298 ORTHO05D009226 2.7e-46 189.9 288 45.1
Psat7g113280 Pisum sativum HOM05D007298 ORTHO05D009226 3.6e-46 189.5 286 45.5
TPR.G16338 Trifolium pratense HOM05D007298 ORTHO05D009226 4.6e-46 189.1 305 44.3
Medtr4g088515 Medicago truncatula HOM05D000062 ORTHO05D000043 7.9e-46 188.3 286 45.5
MBI13_g02430_MAGBIO Magnolia biondii HOM05D007298 ORTHO05D009226 1.0e-45 188.0 304 45.7
Actinidia30606 Actinidia chinensis HOM05D007298 ORTHO05D009226 3.0e-45 186.4 293 45.7
Lalb_Chr05g0218531 Lupinus albus HOM05D007298 ORTHO05D009226 5.7e-44 182.2 300 44.0
VMungo0251G1522 Vigna mungo HOM05D007298 ORTHO05D009226 1.3e-43 181.0 305 42.0
Migut.K01030 Erythranthe guttata HOM05D007298 ORTHO05D009226 3.7e-43 179.5 276 43.1
arahy.Tifrunner.gnm1.ann1.IS7ZQD Arachis hypogaea HOM05D002349 ORTHO05D002464 1.1e-42 177.9 304 42.1
arahy.Tifrunner.gnm1.ann1.MB6W4F Arachis hypogaea HOM05D002349 ORTHO05D002464 1.1e-42 177.9 304 42.1
Nitab4.5_0008442g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 1.1e-42 177.9 294 43.5
Phvul.002G230700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 1.4e-42 177.6 298 43.0
MELO3C026268.2 Cucumis melo HOM05D007298 ORTHO05D009226 1.8e-42 177.2 300 42.7
PGSC0003DMG400025413 Solanum tuberosum HOM05D007298 ORTHO05D009226 2.4e-42 176.8 281 43.1
Glyma.07G199400 Glycine max HOM05D007298 ORTHO05D009226 3.1e-42 176.4 246 48.8
Sabra01G0000900 Salix brachista HOM05D007298 ORTHO05D009226 3.1e-42 176.4 303 43.9
MD11G1000700 Malus domestica HOM05D007298 ORTHO05D009226 4.1e-42 176.0 280 46.1
Nn2g15906 Nelumbo nucifera HOM05D007298 ORTHO05D009226 4.1e-42 176.0 325 41.8
Sed0017427 Sechium edule HOM05D007298 ORTHO05D009226 5.3e-42 175.6 304 43.8
CsaV3_1G001220 Cucumis sativus L. HOM05D007298 ORTHO05D009226 9.1e-42 174.9 300 42.3
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 2.0e-41 173.7 278 42.1
Potri.001G001000 Populus trichocarpa HOM05D007298 ORTHO05D009226 2.0e-41 173.7 287 43.9
RcHm_v2.0_Chr5g0084091 Rosa chinensis HOM05D007298 ORTHO05D009226 4.5e-41 172.6 281 44.8
Glyma.13G177000 Glycine max HOM05D007298 ORTHO05D009226 2.2e-40 170.2 253 46.6
Nn7g35796 Nelumbo nucifera HOM05D007298 ORTHO05D009226 2.9e-40 169.9 272 45.6
ClCG06G017280 Citrullus lanatus HOM05D007298 ORTHO05D009226 3.8e-40 169.5 293 43.0
PGR119G1464 Punica granatum HOM05D007298 ORTHO05D009226 5.0e-40 169.1 310 42.9
Ciclev10017525m.g Citrus clementina HOM05D007298 ORTHO05D009226 7.2e-39 165.2 253 42.7
Rhsim12G0097800 Rhododendron simsii HOM05D007298 ORTHO05D009226 7.2e-39 165.2 290 44.5
Sopen05g018720 Solanum pennellii HOM05D007298 ORTHO05D009226 1.6e-38 164.1 272 43.0
Peaxi162Scf00128g01770 Petunia axillaris HOM05D007298 ORTHO05D009226 2.7e-38 163.3 283 40.6
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 2.3e-37 160.2 263 41.8
TWI32G0891 Tripterygium wilfordii HOM05D007298 ORTHO05D009226 2.3e-37 160.2 285 41.4
Dinv31519 Davidia involucrata HOM05D007298 ORTHO05D009226 3.0e-37 159.8 262 45.8
QL01p007822 Quercus lobata HOM05D007298 ORTHO05D009226 3.9e-37 159.5 293 42.3
Carub.0007s1454 Capsella rubella HOM05D007298 ORTHO05D009226 1.1e-36 157.9 315 41.9
Eucgr.J01725 Eucalyptus grandis HOM05D007298 ORTHO05D009226 1.1e-36 157.9 286 43.4
FvH4_3g45980 Fragaria vesca HOM05D007298 ORTHO05D009226 2.0e-36 157.1 261 42.5
Ca_18576_v3 Cicer arietinum L. HOM05D007298 ORTHO05D009226 3.3e-36 156.4 295 41.4
Manes.15G111000 Manihot esculenta HOM05D007298 ORTHO05D009226 7.4e-36 155.2 290 41.7
Haze_22918 Corylus avellana HOM05D007298 ORTHO05D009226 2.2e-35 153.7 311 42.8
Sp7g24320 Schrenkiella parvula HOM05D007298 ORTHO05D009226 2.2e-35 153.7 311 39.2
C07p54880 Brassica napus HOM05D007298 ORTHO05D009226 2.8e-35 153.3 308 39.0
BolC7t45976H Brassica oleracea HOM05D007298 ORTHO05D009226 2.8e-35 153.3 308 39.0
FAN16G2589 Fragaria x ananassa HOM05D007298 ORTHO05D009226 6.3e-35 152.1 300 39.7
Solyc05g024020.1 Solanum lycopersicum HOM05D007298 ORTHO05D009226 1.8e-34 150.6 269 40.9
Duzib084G1143 Durio zibethinus HOM05D007298 ORTHO05D009226 2.4e-34 150.2 214 48.1
SGA_v2.0_scaffold9G04794 Striga asiatica HOM05D002076 ORTHO05D002087 2.4e-34 150.2 235 43.8
A03p56680 Brassica napus HOM05D007298 ORTHO05D009226 3.1e-34 149.8 285 40.0
BraA03t14738Z Brassica rapa HOM05D007298 ORTHO05D009226 3.1e-34 149.8 285 40.0
Prupe.6G001000 Prunus persica HOM05D007298 ORTHO05D009226 5.3e-34 149.1 285 43.5
AT4G26415 Arabidopsis thaliana HOM05D007298 ORTHO05D009226 9.1e-34 148.3 318 37.4
BcaC06g32750 Brassica carinata HOM05D007298 ORTHO05D009226 2.6e-33 146.7 281 39.5
DCAR_006996 Daucus carota HOM05D007298 ORTHO05D009226 2.6e-33 146.7 274 38.0
THA.LOC104813474 Tarenaya hassleriana HOM05D007298 ORTHO05D009226 7.7e-33 145.2 258 42.2
Lsat_1_v5_gn_4_2201 Lactuca sativa HOM05D007298 ORTHO05D009226 1.0e-32 144.8 228 42.1
Actinidia09612 Actinidia chinensis HOM05D007298 ORTHO05D009226 1.7e-32 144.1 286 39.2
AL7G26540 Arabidopsis lyrata HOM05D007298 ORTHO05D009226 3.8e-32 142.9 291 38.8
CARHR233970 Cardamine hirsuta HOM05D007298 ORTHO05D009226 3.8e-32 142.9 287 41.1
Thhalv10026008m.g Eutrema salsugineum HOM05D007298 ORTHO05D009226 3.8e-32 142.9 289 39.8
CANSAT11G1103 Cannabis sativa HOM05D007298 ORTHO05D009226 5.0e-32 142.5 255 42.4
BcaNung02423 Brassica carinata HOM05D007298 ORTHO05D009226 1.5e-31 141.0 309 37.5
HanXRQChr12g0385721 Helianthus annuus HOM05D007298 ORTHO05D009226 4.2e-31 139.4 215 42.8
FAN11G2203 Fragaria x ananassa HOM05D007298 ORTHO05D009226 3.0e-29 133.3 245 40.4
FAN21G1139 Fragaria x ananassa HOM05D007298 ORTHO05D009226 8.8e-29 131.7 247 41.3
Hma1.2p1_0459F.1_g157260 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 1.2e-28 131.3 251 43.0
DCAR_006994 Daucus carota HOM05D007298 ORTHO05D009226 2.6e-28 130.2 262 36.6
Sed0020092 Sechium edule HOM05D007298 ORTHO05D009226 4.4e-28 129.4 233 41.2
FAN25G2175 Fragaria x ananassa HOM05D007298 ORTHO05D009226 9.7e-28 128.3 246 40.7
unitig_22.g6385 Utricularia gibba HOM05D007298 ORTHO05D009226 4.8e-27 125.9 228 39.0
SalBow2G0405 Salvia bowleyana HOM05D007298 ORTHO05D009226 1.1e-26 124.8 230 39.1
SalBow2G1404 Salvia bowleyana HOM05D007298 ORTHO05D009226 1.1e-26 124.8 230 39.1
Zm00001eb127960 Zea mays HOM05D007298 ORTHO05D009226 1.8e-26 124.0 276 39.9
ATR0068G085 Amborella trichopoda HOM05D007298 ORTHO05D009226 9.4e-23 111.7 345 32.5
Cpa.g.sc119.13 Carica papaya HOM05D007298 ORTHO05D009226 1.5e-20 104.4 289 36.7
Glyma.13G237100 Glycine max HOM05D007298 ORTHO05D009226 2.6e-20 103.6 130 50.0
Glyma.15G076400 Glycine max HOM05D007298 ORTHO05D009226 1.3e-19 101.3 169 42.0
Phvul.006G183700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 4.1e-18 96.3 176 39.8
CDE07G0295 Ceratophyllum demersum HOM05D000114 ORTHO05D000038 7.0e-10 68.9 97 51.5
Nitab4.5_0000340g0060 Nicotiana tabacum HOM05D007298 ORTHO05D009226 1.2e-09 68.2 109 44.0
BcaC09g50696 Brassica carinata HOM05D007298 ORTHO05D009226 2.8e-06 57.0 55 52.7
C01p22230 Brassica napus HOM05D007298 ORTHO05D009226 2.8e-06 57.0 55 52.7
BolC1t02153H Brassica oleracea HOM05D007298 ORTHO05D009226 2.8e-06 57.0 55 52.7


User provided reference genes

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