Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 1.4e-306 1055.4 535 100.0
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 1.0e-280 969.5 535 93.1
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 1.3e-227 793.1 519 76.9
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 2.2e-227 792.3 525 76.8
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 3.6e-225 785.0 526 76.4
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 1.4e-224 783.1 527 75.7
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 1.8e-224 782.7 541 74.1
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 4.0e-224 781.6 531 75.1
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 6.8e-224 780.8 522 74.7
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 3.4e-223 778.5 534 75.1
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 4.4e-223 778.1 523 75.5
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 7.5e-223 777.3 523 76.3
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 2.2e-222 775.8 525 74.9
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 4.8e-222 774.6 524 75.0
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 6.3e-222 774.2 527 73.6
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 1.8e-221 772.7 535 73.3
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 7.0e-221 770.8 523 74.6
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 1.3e-219 766.5 520 74.8
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 9.5e-218 760.4 524 74.0
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 1.2e-217 760.0 583 69.0
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 2.8e-217 758.8 525 73.1
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 8.0e-217 757.3 527 72.3
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 8.0e-217 757.3 524 73.9
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 1.0e-216 756.9 522 74.9
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 1.0e-216 756.9 523 74.2
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 1.4e-216 756.5 532 72.4
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 2.3e-216 755.7 537 71.1
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 2.3e-216 755.7 526 73.4
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 3.0e-216 755.4 512 74.8
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 5.2e-216 754.6 524 73.3
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 8.8e-216 753.8 524 72.7
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 8.8e-216 753.8 525 73.7
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 4.4e-215 751.5 526 72.6
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 7.5e-215 750.7 528 72.3
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 7.5e-215 750.7 523 73.0
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 1.7e-214 749.6 526 72.4
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 1.7e-214 749.6 525 73.1
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 2.8e-214 748.8 525 72.0
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 3.7e-214 748.4 519 72.3
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 4.9e-214 748.0 535 72.0
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 1.1e-213 746.9 522 72.6
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.8e-213 746.1 529 70.9
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 4.1e-213 745.0 537 70.2
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 7.0e-213 744.2 525 71.8
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 9.2e-213 743.8 532 73.3
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 9.2e-213 743.8 526 72.8
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 2.0e-212 742.7 527 71.7
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 2.7e-212 742.3 523 71.7
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 2.7e-212 742.3 524 70.8
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 5.9e-212 741.1 527 71.0
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 5.9e-212 741.1 532 72.2
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 1.0e-211 740.3 519 71.7
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 1.0e-211 740.3 523 71.7
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 1.0e-211 740.3 518 73.0
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 1.3e-211 740.0 527 71.0
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 3.8e-211 738.4 533 71.1
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 6.6e-211 737.6 533 71.1
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 8.6e-211 737.3 542 69.6
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 1.1e-210 736.9 545 69.7
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 1.9e-210 736.1 519 73.8
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 5.6e-210 734.6 524 69.8
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 2.1e-209 732.6 537 71.7
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 2.8e-209 732.3 544 69.3
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 3.6e-209 731.9 543 69.1
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 6.1e-209 731.1 545 69.0
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 6.1e-209 731.1 537 70.6
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 8.0e-209 730.7 544 69.1
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 3.0e-208 728.8 544 68.8
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 3.0e-208 728.8 544 68.8
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 3.0e-208 728.8 525 70.5
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 3.4e-207 725.3 523 71.5
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 3.4e-207 725.3 545 69.4
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 4.4e-207 724.9 543 68.5
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 7.5e-207 724.2 536 69.0
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 1.3e-206 723.4 565 67.3
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 6.4e-206 721.1 525 70.1
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 6.4e-206 721.1 518 70.5
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 1.4e-205 719.9 523 70.6
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 7.0e-205 717.6 500 72.4
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 1.6e-204 716.5 511 72.4
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 4.7e-201 704.9 537 67.0
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 1.8e-200 703.0 518 69.5
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 1.2e-199 700.3 542 67.7
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 3.4e-199 698.7 483 73.3
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 7.5e-199 697.6 476 74.6
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 6.4e-198 694.5 519 67.6
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 7.0e-197 691.0 522 67.8
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 2.7e-196 689.1 492 71.5
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 3.5e-196 688.7 554 65.5
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.2e-191 673.7 487 70.4
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 1.9e-189 666.4 519 65.7
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 5.6e-186 654.8 541 64.3
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 4.6e-180 635.2 528 63.3
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 8.6e-179 630.9 580 62.4
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 1.3e-171 607.1 546 59.9
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 3.9e-171 605.5 410 74.4
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 5.1e-163 578.6 407 72.2
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 1.9e-162 576.6 498 63.9
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 5.6e-162 575.1 412 70.9
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 1.7e-121 440.7 349 65.6
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 3.7e-121 439.5 535 48.2
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 7.7e-119 431.8 528 49.8
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 8.8e-115 418.3 270 77.0
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 3.5e-111 406.4 523 44.9
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 3.5e-111 406.4 555 43.4
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 1.3e-110 404.4 291 70.1
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 7.2e-109 398.7 538 43.5
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 8.3e-105 385.2 257 74.3
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 1.8e-104 384.0 296 66.6
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 7.7e-103 378.6 556 42.1
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 1.8e-99 367.5 541 39.7
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 2.2e-97 360.5 314 60.8
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 1.1e-80 305.1 426 42.5
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 9.5e-77 292.0 178 78.7
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.4e-75 288.1 311 53.1
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 3.3e-69 266.9 621 32.7
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 4.9e-57 226.5 223 55.6
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.7e-55 220.7 268 49.6
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 7.8e-55 219.2 162 69.8
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 3.0e-54 217.2 147 74.8
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 2.4e-48 197.6 702 27.5
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 4.6e-47 193.4 99 87.9
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 3.9e-46 190.3 174 57.5
SEGI_13510 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 2.7e-39 167.5 112 75.0
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 3.9e-38 163.7 111 73.9
Actinidia21044 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.3e-30 138.7 122 58.2
Nitab4.5_0002433g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.5e-26 125.2 97 62.9
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 1.3e-25 122.1 83 73.5
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 4.6e-23 113.6 182 36.3
SEGI_31813 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 5.9e-18 96.7 95 49.5
SEGI_40223 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 5.5e-16 90.1 99 48.5
ATR0706G260 Amborella trichopoda HOM05D005743 ORTHO05D007031 9.4e-16 89.4 51 86.3
PRCOL_00000753 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 1.2e-10 72.4 111 36.0
Medtr7g112660 Medicago truncatula HOM05D005743 ORTHO05D007031 7.2e-08 63.2 40 77.5
MCO03G398 Micromonas commoda HOM05D018879 ORTHO05D018932 8.0e-07 59.7 367 22.9
Medtr3g062620 Medicago truncatula HOM05D005743 ORTHO05D007031 8.8e-06 56.2 40 72.5


User provided reference genes

Program Settings