Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 6.3e-299 1030.0 523 100.0
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 2.9e-280 968.0 535 93.1
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 3.1e-213 745.3 523 73.2
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 3.8e-211 738.4 519 73.0
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 2.4e-210 735.7 527 71.7
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 5.4e-210 734.6 526 72.6
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 7.1e-210 734.2 541 70.8
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 9.3e-210 733.8 531 71.9
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 2.1e-209 732.6 525 71.6
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 4.6e-209 731.5 521 71.4
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 1.7e-208 729.6 527 70.2
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 2.3e-208 729.2 523 71.1
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 3.0e-208 728.8 522 71.6
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 5.1e-208 728.0 533 71.3
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 6.6e-208 727.6 511 73.2
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 1.1e-207 726.9 522 72.4
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 2.1e-206 722.6 524 71.2
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 1.8e-205 719.5 520 71.3
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 5.3e-205 718.0 524 70.4
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 9.0e-205 717.2 534 69.1
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 7.6e-204 714.1 512 71.5
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 9.9e-204 713.8 524 69.3
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 1.3e-203 713.4 523 69.4
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 4.9e-203 711.4 525 69.5
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 8.4e-203 710.7 523 70.2
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 1.9e-202 709.5 524 69.5
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 1.9e-202 709.5 524 69.5
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 3.2e-202 708.8 528 68.8
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 3.2e-202 708.8 531 69.1
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 5.4e-202 708.0 524 69.1
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 7.1e-202 707.6 523 70.0
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 9.3e-202 707.2 527 68.9
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 9.3e-202 707.2 519 69.6
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 9.3e-202 707.2 583 65.7
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 1.2e-201 706.8 522 71.6
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.6e-201 706.4 522 70.1
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 2.7e-201 705.7 525 69.9
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 4.6e-201 704.9 530 69.6
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 6.0e-201 704.5 527 68.7
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 1.0e-200 703.7 512 71.5
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 1.0e-200 703.7 515 70.1
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.3e-200 703.4 523 69.6
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 3.9e-200 701.8 522 68.0
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 6.7e-200 701.0 534 68.5
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 6.7e-200 701.0 523 69.0
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 1.1e-199 700.3 539 67.9
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 1.1e-199 700.3 523 69.6
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.9e-199 699.5 528 68.0
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 3.3e-199 698.7 532 69.7
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.6e-198 696.4 536 66.8
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 2.1e-198 696.0 540 67.2
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 2.1e-198 696.0 517 69.1
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 4.8e-198 694.9 527 69.4
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 6.2e-198 694.5 523 68.1
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 6.2e-198 694.5 522 67.2
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 6.9e-197 691.0 538 66.5
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 6.9e-197 691.0 517 69.4
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 9.0e-197 690.6 534 68.2
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 9.0e-197 690.6 526 67.7
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 1.2e-196 690.3 540 66.5
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 1.5e-196 689.9 534 68.0
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 1.5e-196 689.9 539 67.0
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 2.0e-196 689.5 526 67.5
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 4.5e-196 688.3 517 70.4
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 7.6e-196 687.6 512 68.9
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 9.9e-196 687.2 543 66.5
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 8.4e-195 684.1 539 66.4
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 8.4e-195 684.1 536 67.2
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 8.4e-195 684.1 531 66.5
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 1.1e-194 683.7 539 66.0
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 1.1e-194 683.7 539 66.0
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 1.9e-194 682.9 522 68.0
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 1.9e-194 682.9 539 66.2
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 3.5e-193 678.7 545 66.1
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 6.0e-193 677.9 520 67.7
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 7.9e-193 677.6 517 67.3
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 3.9e-192 675.2 498 69.7
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 8.7e-192 674.1 524 66.6
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 5.6e-191 671.4 499 68.7
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 9.6e-191 670.6 565 64.1
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 4.5e-188 661.8 536 63.8
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 4.5e-188 661.8 531 65.3
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.4e-186 656.8 483 69.4
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 1.4e-186 656.8 518 66.4
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 3.2e-186 655.6 516 64.9
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 9.3e-186 654.1 476 71.4
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 2.1e-185 652.9 518 65.8
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 6.7e-184 647.9 491 68.2
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 4.8e-182 641.7 508 65.2
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 6.3e-182 641.3 553 62.4
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 3.6e-177 625.5 486 66.9
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 3.7e-174 615.5 537 61.8
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 1.6e-169 600.1 528 60.6
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 5.3e-165 585.1 580 59.1
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 3.3e-159 565.8 545 57.4
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 1.7e-158 563.5 410 71.0
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 3.2e-154 549.3 407 68.8
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 8.8e-152 541.2 412 67.7
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 7.5e-151 538.1 496 61.1
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.1e-114 417.9 499 49.5
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 2.1e-113 413.7 347 63.1
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 4.9e-110 402.5 516 48.1
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 5.6e-106 389.0 265 73.6
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 6.8e-104 382.1 561 40.5
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 1.5e-103 380.9 527 43.3
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 2.9e-102 376.7 538 41.6
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 1.9e-101 374.0 291 66.3
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 1.7e-99 367.5 257 71.2
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 1.4e-96 357.8 555 38.6
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 3.4e-95 353.2 260 67.7
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 2.9e-94 350.1 534 38.6
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 3.3e-90 336.7 320 56.9
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 3.0e-75 287.0 414 40.8
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.1e-69 268.5 178 73.0
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 2.8e-65 253.8 310 48.7
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 2.4e-64 250.8 619 31.3
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 1.1e-53 215.3 147 74.1
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 4.2e-53 213.4 162 67.3
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 7.2e-53 212.6 220 53.2
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 3.0e-51 207.2 267 47.2
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 4.7e-44 183.3 128 66.4
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 3.3e-42 177.2 704 25.7
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 2.2e-41 174.5 174 52.9
SEGI_13510 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 1.2e-36 158.7 112 71.4
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 2.6e-34 151.0 111 69.4
Actinidia21044 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.2e-26 125.6 111 60.4
Nitab4.5_0002433g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 3.4e-26 124.0 97 61.9
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 1.3e-22 112.1 245 31.0
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 6.6e-22 109.8 83 66.3
SEGI_31813 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 4.4e-18 97.1 88 54.5
SEGI_40223 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 7.0e-16 89.7 103 48.5
ATR0706G260 Amborella trichopoda HOM05D005743 ORTHO05D007031 2.9e-14 84.3 51 80.4
PRCOL_00000753 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 2.3e-11 74.7 109 38.5
Medtr7g112660 Medicago truncatula HOM05D005743 ORTHO05D007031 1.7e-06 58.5 40 70.0
PRCOL_00000097 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 5.0e-06 57.0 165 27.9
MCO02G055 Micromonas commoda HOM05D018879 ORTHO05D018932 6.6e-06 56.6 126 33.3


User provided reference genes

Program Settings