Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0003760 Simmondsia chinensis HOM05D006737 ORTHO05D008418 7.6e-183 643.7 317 100.0
Ciclev10021225m.g Citrus clementina HOM05D006737 ORTHO05D008418 1.1e-99 367.5 297 60.9
Prupe.8G262100 Prunus persica HOM05D006737 ORTHO05D008418 3.8e-97 359.0 286 61.2
AUR62025575 Chenopodium quinoa HOM05D006737 ORTHO05D008418 4.9e-97 358.6 304 61.5
Potri.002G203900 Populus trichocarpa HOM05D006737 ORTHO05D008418 2.4e-96 356.3 298 59.4
Cfa005906 Carpinus fangiana HOM05D006737 ORTHO05D008418 3.2e-96 355.9 306 57.8
AUR62008669 Chenopodium quinoa HOM05D006737 ORTHO05D008418 4.2e-96 355.5 301 60.5
Manes.01G219800 Manihot esculenta HOM05D006737 ORTHO05D008418 7.1e-96 354.8 285 58.9
FvH4_2g25800 Fragaria vesca HOM05D006737 ORTHO05D008418 1.2e-95 354.0 284 60.6
FAN15G3576 Fragaria x ananassa HOM05D006737 ORTHO05D008418 1.2e-95 354.0 284 60.9
FAN24G1027 Fragaria x ananassa HOM05D006737 ORTHO05D008418 1.2e-95 354.0 284 60.6
Haze_04944 Corylus avellana HOM05D006737 ORTHO05D008418 1.6e-95 353.6 304 57.2
MD03G1288800 Malus domestica HOM05D006737 ORTHO05D008418 2.7e-95 352.8 286 59.1
Atru.chr5.1140 Acer truncatum HOM05D006737 ORTHO05D008418 7.8e-95 351.3 308 54.9
GSVIVG01028025001 Vitis vinifera HOM05D006737 ORTHO05D008418 1.0e-94 350.9 307 57.3
EL10Ac7g17513 Beta vulgaris HOM05D006737 ORTHO05D008418 9.6e-93 344.4 310 57.7
Hund05430 Selenicereus undatus HOM05D006737 ORTHO05D008418 9.6e-93 344.4 305 58.0
RcHm_v2.0_Chr6g0294111 Rosa chinensis HOM05D006737 ORTHO05D008418 1.3e-92 344.0 284 59.2
FAN27G1696 Fragaria x ananassa HOM05D006737 ORTHO05D008418 2.1e-92 343.2 297 57.9
CiPaw.07G109800 Carya illinoinensis HOM05D006737 ORTHO05D008418 2.8e-92 342.8 341 51.9
MD11G1309100 Malus domestica HOM05D006737 ORTHO05D008418 4.8e-92 342.0 286 58.7
Cpa.g.sc9.256 Carica papaya HOM05D006737 ORTHO05D008418 5.3e-91 338.6 294 56.8
Thecc.01G301300 Theobroma cacao HOM05D006737 ORTHO05D008418 2.0e-90 336.7 318 55.0
TWI14G0449 Tripterygium wilfordii HOM05D006737 ORTHO05D008418 2.0e-90 336.7 314 55.4
Eucgr.H01107 Eucalyptus grandis HOM05D006737 ORTHO05D008418 4.5e-90 335.5 286 57.3
Gorai.008G144900 Gossypium raimondii HOM05D006737 ORTHO05D008418 1.3e-89 334.0 315 53.7
Sabra02G0155300 Salix brachista HOM05D006737 ORTHO05D008418 1.7e-89 333.6 341 51.6
Gohir.D12G133900 Gossypium hirsutum HOM05D006737 ORTHO05D008418 4.9e-89 332.0 315 53.3
Gohir.A12G130100 Gossypium hirsutum HOM05D006737 ORTHO05D008418 8.4e-89 331.3 315 53.3
Nn3g21504 Nelumbo nucifera HOM05D006737 ORTHO05D008418 3.2e-88 329.3 292 57.9
Gohir.D08G085900 Gossypium hirsutum HOM05D006737 ORTHO05D008418 7.1e-88 328.2 279 57.7
Gorai.004G090400 Gossypium raimondii HOM05D006737 ORTHO05D008418 1.2e-87 327.4 279 57.7
CSS0030900 Camellia sinensis var. sinensis HOM05D006737 ORTHO05D008418 1.6e-87 327.0 298 57.0
Gohir.A08G076400 Gossypium hirsutum HOM05D006737 ORTHO05D008418 1.6e-87 327.0 279 57.3
CiPaw.07G109600 Carya illinoinensis HOM05D006737 ORTHO05D008418 2.7e-87 326.2 255 61.2
QL12p028401 Quercus lobata HOM05D006737 ORTHO05D008418 6.0e-87 325.1 303 53.8
FAN20G1602 Fragaria x ananassa HOM05D006737 ORTHO05D008418 1.0e-86 324.3 279 57.7
TAR365G0544 Trochodendron aralioides HOM05D006737 ORTHO05D008418 3.0e-86 322.8 300 56.7
Hma1.2p1_0491F.1_g164620 Hydrangea macrophylla HOM05D006737 ORTHO05D008418 3.3e-85 319.3 272 58.8
Lsat_1_v5_gn_8_164261 Lactuca sativa HOM05D006737 ORTHO05D008418 1.6e-84 317.0 279 57.0
vmacro02447 Vaccinium macrocarpon HOM05D006737 ORTHO05D008418 2.1e-84 316.6 324 54.3
ECA236G1530 Erigeron canadensis HOM05D006737 ORTHO05D008418 2.8e-84 316.2 280 56.8
Lj6g0001904 Lotus japonicus HOM05D006737 ORTHO05D008418 8.1e-84 314.7 282 54.3
Aqoxy2G02933 Aquilegia oxysepala HOM05D006737 ORTHO05D008418 3.1e-83 312.8 304 54.3
Glyma.19G211400 Glycine max HOM05D006737 ORTHO05D008418 1.2e-82 310.8 283 54.8
Thhalv10028823m.g Eutrema salsugineum HOM05D006737 ORTHO05D008418 4.5e-82 308.9 286 53.1
PGR119G0152 Punica granatum HOM05D006737 ORTHO05D008418 1.3e-81 307.4 292 50.7
BcaB01g02446 Brassica carinata HOM05D006737 ORTHO05D008418 2.9e-81 306.2 289 52.2
MBI19_g26092_MAGBIO Magnolia biondii HOM05D006737 ORTHO05D008418 8.4e-81 304.7 287 54.4
MSTRG.12607 Avicennia marina HOM05D006737 ORTHO05D008418 1.4e-80 303.9 302 50.7
SalBow2G2271 Salvia bowleyana HOM05D006737 ORTHO05D008418 1.4e-80 303.9 255 56.5
ClCG01G014930 Citrullus lanatus HOM05D006737 ORTHO05D008418 2.4e-80 303.1 323 50.8
CANSAT25G2451 Cannabis sativa HOM05D006737 ORTHO05D008418 3.5e-79 299.3 310 51.6
AL6G50710 Arabidopsis lyrata HOM05D006737 ORTHO05D008418 4.6e-79 298.9 290 51.4
BcaC01g06761 Brassica carinata HOM05D006737 ORTHO05D008418 1.3e-78 297.4 295 52.5
Sopen06g035940 Solanum pennellii HOM05D006737 ORTHO05D008418 1.8e-78 297.0 289 51.6
Actinidia01489 Actinidia chinensis HOM05D006737 ORTHO05D008418 3.9e-78 295.8 237 59.1
Carub.0006s3475 Capsella rubella HOM05D006737 ORTHO05D008418 5.1e-78 295.4 290 51.7
PSO407G0435 Papaver somniferum HOM05D006737 ORTHO05D008418 5.1e-78 295.4 301 52.5
Rhsim13G0009900 Rhododendron simsii HOM05D006737 ORTHO05D008418 5.1e-78 295.4 297 54.2
PSO170G1161 Papaver somniferum HOM05D006737 ORTHO05D008418 6.7e-78 295.0 301 52.5
DCAR_002840 Daucus carota HOM05D006737 ORTHO05D008418 1.1e-77 294.3 278 53.6
Phvul.001G207600 Phaseolus vulgaris HOM05D006737 ORTHO05D008418 1.1e-77 294.3 320 49.1
Solyc06g084570.4 Solanum lycopersicum HOM05D006737 ORTHO05D008418 4.3e-77 292.4 293 50.2
BolC3t16077H Brassica oleracea HOM05D006737 ORTHO05D008418 7.4e-77 291.6 305 50.8
CAN.G1209.24 Capsicum annuum HOM05D006737 ORTHO05D008418 1.6e-76 290.4 290 51.4
Oeu048335.1 Olea europaea HOM05D006737 ORTHO05D008418 2.1e-76 290.0 233 58.4
Sp6g02290 Schrenkiella parvula HOM05D006737 ORTHO05D008418 2.1e-76 290.0 288 51.4
CARHR250600 Cardamine hirsuta HOM05D006737 ORTHO05D008418 3.7e-76 289.3 289 50.5
Cc01_g20900 Coffea canephora HOM05D006737 ORTHO05D008418 4.8e-76 288.9 286 52.8
CsaV3_6G041030 Cucumis sativus L. HOM05D006737 ORTHO05D008418 6.2e-76 288.5 323 48.3
C03p37890 Brassica napus HOM05D006737 ORTHO05D008418 1.4e-75 287.3 306 50.0
arahy.Tifrunner.gnm1.ann1.AY1VU4 Arachis hypogaea HOM05D006737 ORTHO05D008418 2.4e-75 286.6 290 52.1
A03p31080 Brassica napus HOM05D006737 ORTHO05D008418 5.3e-75 285.4 304 50.0
BraA03t12285Z Brassica rapa HOM05D006737 ORTHO05D008418 5.3e-75 285.4 304 50.0
Migut.N01508 Erythranthe guttata HOM05D006737 ORTHO05D008418 9.0e-75 284.6 296 50.3
Lalb_Chr02g0146391 Lupinus albus HOM05D006737 ORTHO05D008418 1.2e-74 284.3 299 49.8
MELO3C024580.2 Cucumis melo HOM05D006737 ORTHO05D008418 2.0e-74 283.5 323 47.4
Migut.O00484 Erythranthe guttata HOM05D006737 ORTHO05D008418 3.4e-74 282.7 296 50.0
Peaxi162Scf00140g01213 Petunia axillaris HOM05D006737 ORTHO05D008418 3.4e-74 282.7 259 56.0
Migut.J01135 Erythranthe guttata HOM05D006737 ORTHO05D008418 1.3e-73 280.8 278 51.1
Nitab4.5_0004367g0110 Nicotiana tabacum HOM05D006737 ORTHO05D008418 2.2e-73 280.0 332 46.4
HanXRQChr04g0114161 Helianthus annuus HOM05D006737 ORTHO05D008418 1.1e-72 277.7 253 53.4
Duzib138G1512 Durio zibethinus HOM05D006737 ORTHO05D008418 1.9e-72 276.9 222 59.0
VMungo1383G2597 Vigna mungo HOM05D006737 ORTHO05D008418 1.9e-72 276.9 257 52.9
Aa31LG5G2050 Aethionema arabicum HOM05D006737 ORTHO05D008418 2.5e-72 276.6 289 47.8
MBI19_g25361_MAGBIO Magnolia biondii HOM05D006737 ORTHO05D008418 7.1e-72 275.0 327 47.1
COL.COLO4_23338 Corchorus olitorius HOM05D006737 ORTHO05D008418 2.1e-71 273.5 209 64.1
arahy.Tifrunner.gnm1.ann1.B4PCIP Arachis hypogaea HOM05D006737 ORTHO05D008418 1.1e-69 267.7 319 47.3
SGA_v2.0_scaffold198G41142 Striga asiatica HOM05D006737 ORTHO05D008418 1.9e-69 266.9 255 54.1
AT4G02405 Arabidopsis thaliana HOM05D006737 ORTHO05D008418 1.3e-68 264.2 262 48.9
CDE01G0235 Ceratophyllum demersum HOM05D006737 ORTHO05D008418 6.9e-67 258.5 318 45.3
Os07g0247100 Oryza sativa ssp. japonica HOM05D006737 ORTHO05D008418 2.6e-66 256.5 288 46.5
Zm00001eb097030 Zea mays HOM05D006737 ORTHO05D008418 1.6e-60 237.3 286 45.8
Sed0017513 Sechium edule HOM05D006737 ORTHO05D008418 3.8e-57 226.1 215 51.2
Lj2A1195G25 Lonicera japonica HOM05D006737 ORTHO05D008418 1.9e-56 223.8 272 46.3
Pp3c24_12380 Physcomitrium patens HOM05D006737 ORTHO05D008418 4.4e-45 186.0 346 36.7
Dinv33057 Davidia involucrata HOM05D006737 ORTHO05D008418 2.1e-39 167.2 137 56.9
Oeu010666.1 Olea europaea HOM05D006737 ORTHO05D008418 3.0e-38 163.3 131 55.0
Nitab4.5_0002820g0110 Nicotiana tabacum HOM05D006737 ORTHO05D008418 8.5e-33 145.2 138 56.5
PGSC0003DMG400024036 Solanum tuberosum HOM05D006737 ORTHO05D008418 3.0e-30 136.7 122 50.8
Mapoly0132s0018 Marchantia polymorpha HOM05D006737 ORTHO05D008418 2.8e-28 130.2 238 35.3
arahy.Tifrunner.gnm1.ann1.MB1A81 Arachis hypogaea HOM05D006737 ORTHO05D008418 1.6e-23 114.4 125 49.6
Dinv31287 Davidia involucrata HOM05D006737 ORTHO05D008418 3.1e-19 100.1 86 57.0
Dinv07247 Davidia involucrata HOM05D006737 ORTHO05D008418 9.2e-19 98.6 86 55.8
SEGI_39136 Sequoiadendron giganteum HOM05D006737 ORTHO05D008418 1.2e-18 98.2 141 39.0
Dinv17961 Davidia involucrata HOM05D006737 ORTHO05D008418 2.5e-16 90.5 86 52.3
arahy.Tifrunner.gnm1.ann1.MU6BTE Arachis hypogaea HOM05D006737 ORTHO05D008418 5.6e-16 89.4 114 41.2
VMungo1383G3174 Vigna mungo HOM05D006737 ORTHO05D008418 7.3e-16 89.0 186 31.2
BcaB01g02447 Brassica carinata HOM05D006737 ORTHO05D008418 2.9e-12 77.0 64 56.2
BcaB01g02050 Brassica carinata HOM05D006737 ORTHO05D008418 1.8e-11 74.3 100 42.0
Dinv02523 Davidia involucrata HOM05D006737 ORTHO05D008418 4.1e-11 73.2 72 50.0
Dinv32677 Davidia involucrata HOM05D006737 ORTHO05D008418 6.6e-09 65.9 53 54.7
MCO02G241 Micromonas commoda HOM05D006737 ORTHO05D008418 1.6e-07 61.2 126 28.6
Cre09.g387282 Chlamydomonas reinhardtii HOM05D006737 ORTHO05D008418 1.4e-06 58.2 132 31.8
PGR031G2630 Punica granatum HOM05D006598 ORTHO05D008132 8.9e-06 55.5 196 25.5


User provided reference genes

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