Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0003730 Simmondsia chinensis HOM05D004979 ORTHO05D006190 7.6e-59 230.3 119 100.0
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 2.6e-11 72.4 85 50.6
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 4.5e-11 71.6 82 51.2
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 1.3e-10 70.1 82 50.0
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 2.2e-10 69.3 80 48.8
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.9e-10 68.9 82 46.3
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.9e-10 68.9 82 47.6
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 5.0e-10 68.2 81 49.4
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 6.5e-10 67.8 80 48.8
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 8.5e-10 67.4 81 44.4
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 1.1e-09 67.0 80 46.2
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 1.4e-09 66.6 81 44.4
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 1.4e-09 66.6 81 44.4
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 1.4e-09 66.6 81 44.4
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 1.9e-09 66.2 80 47.5
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 3.2e-09 65.5 80 46.2
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 4.2e-09 65.1 81 44.4
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 5.5e-09 64.7 82 42.7
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 7.2e-09 64.3 80 43.8
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 7.2e-09 64.3 84 44.0
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 9.4e-09 63.9 79 45.6
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 9.4e-09 63.9 82 46.3
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 9.4e-09 63.9 81 48.1
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 9.4e-09 63.9 80 46.2
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 1.2e-08 63.5 79 48.1
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 1.2e-08 63.5 80 46.2
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 1.2e-08 63.5 79 49.4
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 1.2e-08 63.5 80 47.5
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 1.2e-08 63.5 80 43.8
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.6e-08 63.2 91 44.0
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 2.1e-08 62.8 81 42.0
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 2.1e-08 62.8 83 42.2
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 2.1e-08 62.8 80 42.5
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 2.1e-08 62.8 81 43.2
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 2.1e-08 62.8 84 42.9
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 2.7e-08 62.4 80 45.0
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 2.7e-08 62.4 79 44.3
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 2.7e-08 62.4 82 42.7
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 4.7e-08 61.6 80 45.0
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 6.1e-08 61.2 81 40.7
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 6.1e-08 61.2 83 39.8
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 1.0e-07 60.5 82 40.2
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 1.0e-07 60.5 79 44.3
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 1.0e-07 60.5 80 42.5
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 1.4e-07 60.1 80 45.0
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 1.8e-07 59.7 81 43.2
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 1.8e-07 59.7 81 43.2
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 1.8e-07 59.7 79 45.6
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 1.8e-07 59.7 80 41.2
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 1.8e-07 59.7 80 41.2
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 2.3e-07 59.3 75 42.7
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 2.3e-07 59.3 75 42.7
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 2.3e-07 59.3 92 40.2
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 3.0e-07 58.9 75 42.7
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 3.0e-07 58.9 80 45.0
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 3.0e-07 58.9 80 45.0
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 3.0e-07 58.9 79 43.0
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 3.9e-07 58.5 83 37.3
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 3.9e-07 58.5 94 39.4
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 6.7e-07 57.8 79 44.3
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 1.1e-06 57.0 80 40.0
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 1.1e-06 57.0 82 45.1
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 1.1e-06 57.0 79 43.0
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 1.5e-06 56.6 80 40.0
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 1.5e-06 56.6 79 40.5
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 2.0e-06 56.2 75 41.3
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 2.0e-06 56.2 83 37.3
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 2.6e-06 55.8 80 41.2
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 2.6e-06 55.8 80 41.2
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 2.6e-06 55.8 80 41.2
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.6e-06 55.8 82 39.0
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.6e-06 55.8 82 39.0
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 3.3e-06 55.5 83 37.3
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 3.3e-06 55.5 83 37.3
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 3.3e-06 55.5 82 39.0
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.3e-06 55.5 79 40.5
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 3.3e-06 55.5 80 42.5
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 4.4e-06 55.1 80 41.2
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 5.7e-06 54.7 80 38.8
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 7.4e-06 54.3 85 37.6
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 7.4e-06 54.3 86 38.4
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 7.4e-06 54.3 108 33.3
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 9.7e-06 53.9 79 39.2


User provided reference genes

Program Settings