Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0003220 Simmondsia chinensis HOM05D001151 ORTHO05D006836 6.1e-62 240.7 130 100.0
Sc05g0002950 Simmondsia chinensis HOM05D001151 ORTHO05D006836 5.9e-57 224.2 122 98.4
AUR62030119 Chenopodium quinoa HOM05D001151 ORTHO05D006836 1.2e-25 120.2 122 54.9
AUR62030120 Chenopodium quinoa HOM05D001151 ORTHO05D006836 1.2e-25 120.2 122 54.9
GSVIVG01037957001 Vitis vinifera HOM05D001151 ORTHO05D006836 2.5e-23 112.5 124 53.2
Hund21556 Selenicereus undatus HOM05D001151 ORTHO05D006836 1.6e-22 109.8 121 48.8
EL10Ac4g08227 Beta vulgaris HOM05D001151 ORTHO05D006836 4.7e-22 108.2 120 52.5
AUR62042518 Chenopodium quinoa HOM05D001151 ORTHO05D006836 6.2e-22 107.8 107 57.9
EL10Ac3g06737 Beta vulgaris HOM05D001151 ORTHO05D006836 2.4e-21 105.9 136 50.0
EL10Ac4g08352 Beta vulgaris HOM05D001151 ORTHO05D006836 4.4e-20 101.7 128 50.0
Potri.001G442300 Populus trichocarpa HOM05D001151 ORTHO05D006836 1.7e-19 99.8 120 50.8
Cfa000752 Carpinus fangiana HOM05D001151 ORTHO05D006836 2.9e-19 99.0 122 48.4
Lj4g0007248 Lotus japonicus HOM05D001151 ORTHO05D006836 8.4e-19 97.4 120 46.7
MSTRG.16311 Avicennia marina HOM05D001151 ORTHO05D006836 1.4e-18 96.7 116 50.0
Sabra16G0298900 Salix brachista HOM05D001151 ORTHO05D006836 1.4e-18 96.7 120 50.8
Sabra16G0300800 Salix brachista HOM05D001151 ORTHO05D006836 1.4e-18 96.7 120 50.8
TWI38G0934 Tripterygium wilfordii HOM05D001151 ORTHO05D006836 1.9e-18 96.3 104 51.9
Eucgr.A00513 Eucalyptus grandis HOM05D001151 ORTHO05D006836 2.4e-18 95.9 116 47.4
Manes.03G069600 Manihot esculenta HOM05D001151 ORTHO05D006836 2.4e-18 95.9 95 55.8
Rhsim02G0167800 Rhododendron simsii HOM05D001151 ORTHO05D006836 2.4e-18 95.9 125 47.2
QL05p063075 Quercus lobata HOM05D001151 ORTHO05D006836 3.2e-18 95.5 105 53.3
Dinv11973 Davidia involucrata HOM05D001151 ORTHO05D006836 4.2e-18 95.1 115 47.8
Prupe.4G101900 Prunus persica HOM05D001151 ORTHO05D006836 7.1e-18 94.4 122 46.7
vmacro10996 Vaccinium macrocarpon HOM05D001151 ORTHO05D006836 7.1e-18 94.4 120 47.5
Cc09_g07160 Coffea canephora HOM05D001151 ORTHO05D006836 9.2e-18 94.0 104 50.0
Oeu060327.1 Olea europaea HOM05D001151 ORTHO05D006836 9.2e-18 94.0 120 46.7
Thecc.06G005200 Theobroma cacao HOM05D001151 ORTHO05D006836 9.2e-18 94.0 116 44.0
TWI63G0399 Tripterygium wilfordii HOM05D001151 ORTHO05D006836 9.2e-18 94.0 104 50.0
arahy.Tifrunner.gnm1.ann1.RH6BR7 Arachis hypogaea HOM05D001151 ORTHO05D006836 1.6e-17 93.2 120 46.7
arahy.Tifrunner.gnm1.ann1.S6J9QN Arachis hypogaea HOM05D001151 ORTHO05D006836 1.6e-17 93.2 120 46.7
BcaC01g00668 Brassica carinata HOM05D001151 ORTHO05D006836 1.6e-17 93.2 98 49.0
C03p82910 Brassica napus HOM05D001151 ORTHO05D006836 1.6e-17 93.2 98 49.0
Phvul.009G218200 Phaseolus vulgaris HOM05D001151 ORTHO05D006836 2.1e-17 92.8 120 45.0
Lalb_Chr08g0233151 Lupinus albus HOM05D001151 ORTHO05D006836 3.5e-17 92.0 120 46.7
SalBow8G0157 Salvia bowleyana HOM05D001151 ORTHO05D006836 3.5e-17 92.0 122 45.9
TAR627G1052 Trochodendron aralioides HOM05D001151 ORTHO05D006836 3.5e-17 92.0 122 46.7
BolC3t20574H Brassica oleracea HOM05D001151 ORTHO05D006836 4.6e-17 91.7 95 49.5
CiPaw.09G149300 Carya illinoinensis HOM05D001151 ORTHO05D006836 4.6e-17 91.7 120 45.8
Ciclev10016765m.g Citrus clementina HOM05D001151 ORTHO05D006836 4.6e-17 91.7 94 52.1
CARHR227220 Cardamine hirsuta HOM05D001151 ORTHO05D006836 6.0e-17 91.3 98 49.0
Sabra11G0144800 Salix brachista HOM05D001151 ORTHO05D006836 6.0e-17 91.3 114 46.5
BcaB03g11671 Brassica carinata HOM05D001151 ORTHO05D006836 1.3e-16 90.1 98 48.0
A08p14840 Brassica napus HOM05D001151 ORTHO05D006836 1.3e-16 90.1 98 48.0
BraA08t33468Z Brassica rapa HOM05D001151 ORTHO05D006836 1.3e-16 90.1 98 48.0
AL7G33500 Arabidopsis lyrata HOM05D001151 ORTHO05D006836 1.7e-16 89.7 105 47.6
SalBow8G1344 Salvia bowleyana HOM05D001151 ORTHO05D006836 1.7e-16 89.7 122 45.1
Aa31LG6G2780 Aethionema arabicum HOM05D001151 ORTHO05D006836 2.3e-16 89.4 93 52.7
MD10G1241300 Malus domestica HOM05D001151 ORTHO05D006836 2.3e-16 89.4 79 57.0
RcHm_v2.0_Chr5g0018351 Rosa chinensis HOM05D001151 ORTHO05D006836 2.3e-16 89.4 101 54.5
VMungo0251G2869 Vigna mungo HOM05D001151 ORTHO05D006836 2.3e-16 89.4 122 41.0
TPR.G28534 Trifolium pratense HOM05D001151 ORTHO05D006836 3.0e-16 89.0 116 45.7
AT4G20390 Arabidopsis thaliana HOM05D001151 ORTHO05D006836 5.1e-16 88.2 98 49.0
Duzib235G0035 Durio zibethinus HOM05D001151 ORTHO05D006836 5.1e-16 88.2 122 44.3
HanXRQChr11g0342561 Helianthus annuus HOM05D001151 ORTHO05D006836 5.1e-16 88.2 97 50.5
Potri.011G154900 Populus trichocarpa HOM05D001151 ORTHO05D006836 5.1e-16 88.2 94 48.9
Cpa.g.sc832.1 Carica papaya HOM05D001151 ORTHO05D006836 6.6e-16 87.8 94 46.8
DCAR_007799 Daucus carota HOM05D001151 ORTHO05D006836 6.6e-16 87.8 104 46.2
Oeu052707.1 Olea europaea HOM05D001151 ORTHO05D006836 8.7e-16 87.4 122 43.4
TPR.G6272 Trifolium pratense HOM05D001151 ORTHO05D006836 8.7e-16 87.4 122 42.6
Thhalv10026298m.g Eutrema salsugineum HOM05D001151 ORTHO05D006836 1.1e-15 87.0 109 44.0
MELO3C021781.2 Cucumis melo HOM05D001151 ORTHO05D006836 1.5e-15 86.7 91 56.0
Glyma.15G191800 Glycine max HOM05D001151 ORTHO05D006836 1.5e-15 86.7 121 43.0
Peaxi162Scf00670g00341 Petunia axillaris HOM05D001151 ORTHO05D006836 1.9e-15 86.3 115 47.0
Ca_02383_v3 Cicer arietinum L. HOM05D001151 ORTHO05D006836 2.5e-15 85.9 117 41.9
CANSAT35G0921 Cannabis sativa HOM05D001151 ORTHO05D006836 3.3e-15 85.5 96 52.1
Psat7g060880 Pisum sativum HOM05D001151 ORTHO05D006836 3.3e-15 85.5 109 43.1
Actinidia11300 Actinidia chinensis HOM05D001151 ORTHO05D006836 4.3e-15 85.1 81 54.3
Aqoxy4G00085 Aquilegia oxysepala HOM05D001151 ORTHO05D006836 4.3e-15 85.1 113 41.6
Nitab4.5_0006863g0010 Nicotiana tabacum HOM05D001151 ORTHO05D006836 4.3e-15 85.1 94 50.0
C07p27420 Brassica napus HOM05D001151 ORTHO05D006836 5.6e-15 84.7 105 43.8
Thhalv10001033m.g Eutrema salsugineum HOM05D001151 ORTHO05D006836 5.6e-15 84.7 105 45.7
Medtr8g089300 Medicago truncatula HOM05D001151 ORTHO05D006836 5.6e-15 84.7 122 42.6
ECA248G2052 Erigeron canadensis HOM05D001151 ORTHO05D006836 7.3e-15 84.3 96 47.9
Glyma.08G129300 Glycine max HOM05D001151 ORTHO05D006836 7.3e-15 84.3 122 43.4
Nn7g37742 Nelumbo nucifera HOM05D001151 ORTHO05D006836 7.3e-15 84.3 103 48.5
SpUn0524_0010 Schrenkiella parvula HOM05D001151 ORTHO05D006836 7.3e-15 84.3 105 45.7
CSS0028548 Camellia sinensis var. sinensis HOM05D001151 ORTHO05D006836 9.6e-15 84.0 94 50.0
Medtr0097s0070 Medicago truncatula HOM05D001151 ORTHO05D006836 9.6e-15 84.0 116 42.2
VMungo1309G2278 Vigna mungo HOM05D001151 ORTHO05D006836 1.3e-14 83.6 120 42.5
Aa31LG9G8660 Aethionema arabicum HOM05D001151 ORTHO05D006836 1.6e-14 83.2 104 47.1
BcaC06g34540 Brassica carinata HOM05D001151 ORTHO05D006836 1.6e-14 83.2 107 44.9
A06p47100 Brassica napus HOM05D001151 ORTHO05D006836 1.6e-14 83.2 105 43.8
BolC7t43272H Brassica oleracea HOM05D001151 ORTHO05D006836 1.6e-14 83.2 105 43.8
BraA06t27582Z Brassica rapa HOM05D001151 ORTHO05D006836 1.6e-14 83.2 105 43.8
Migut.M01934 Erythranthe guttata HOM05D001151 ORTHO05D006836 1.6e-14 83.2 82 51.2
FvH4_3g11410 Fragaria vesca HOM05D001151 ORTHO05D006836 1.6e-14 83.2 91 51.6
FAN16G1287 Fragaria x ananassa HOM05D004135 ORTHO05D005558 1.6e-14 83.2 91 51.6
FAN25G0432 Fragaria x ananassa HOM05D001151 ORTHO05D006836 1.6e-14 83.2 91 51.6
Nitab4.5_0002719g0040 Nicotiana tabacum HOM05D001151 ORTHO05D006836 1.6e-14 83.2 94 50.0
Sp7g18760 Schrenkiella parvula HOM05D001151 ORTHO05D006836 1.6e-14 83.2 95 46.3
Sed0027287 Sechium edule HOM05D001151 ORTHO05D006836 2.1e-14 82.8 108 46.3
BcaB07g30519 Brassica carinata HOM05D001151 ORTHO05D006836 2.8e-14 82.4 111 44.1
Solyc02g069730.3 Solanum lycopersicum HOM05D001151 ORTHO05D006836 2.8e-14 82.4 96 47.9
Sopen02g018850 Solanum pennellii HOM05D001151 ORTHO05D006836 2.8e-14 82.4 96 47.9
BcaC03g16673 Brassica carinata HOM05D001151 ORTHO05D006836 3.6e-14 82.0 105 42.9
C02p45080 Brassica napus HOM05D001151 ORTHO05D006836 3.6e-14 82.0 105 42.9
BolC2t10546H Brassica oleracea HOM05D001151 ORTHO05D006836 3.6e-14 82.0 105 42.9
Lsat_1_v5_gn_1_111521 Lactuca sativa HOM05D001151 ORTHO05D006836 3.6e-14 82.0 94 45.7
PGR083G0430 Punica granatum HOM05D001151 ORTHO05D006836 3.6e-14 82.0 94 48.9
PGSC0003DMG400021195 Solanum tuberosum HOM05D001151 ORTHO05D006836 3.6e-14 82.0 96 46.9
ClCG01G008950 Citrullus lanatus HOM05D001151 ORTHO05D006836 4.8e-14 81.6 100 48.0
Glyma.U031308 Glycine max HOM05D001151 ORTHO05D006836 8.1e-14 80.9 122 39.3
BcaC06g31607 Brassica carinata HOM05D001151 ORTHO05D006836 1.1e-13 80.5 105 41.9
A02p28460 Brassica napus HOM05D001151 ORTHO05D006836 1.1e-13 80.5 105 41.9
BraA02t07881Z Brassica rapa HOM05D001151 ORTHO05D006836 1.1e-13 80.5 105 41.9
Carub.0008s0395 Capsella rubella HOM05D001151 ORTHO05D006836 1.4e-13 80.1 106 44.3
AL8G15270 Arabidopsis lyrata HOM05D001151 ORTHO05D006836 1.8e-13 79.7 106 44.3
Psat1g019520 Pisum sativum HOM05D001151 ORTHO05D006836 1.8e-13 79.7 114 42.1
Carub.0007s2077 Capsella rubella HOM05D001151 ORTHO05D006836 3.1e-13 79.0 84 50.0
AT5G44550 Arabidopsis thaliana HOM05D001151 ORTHO05D006836 6.9e-13 77.8 106 43.4
COL.COLO4_26866 Corchorus olitorius HOM05D001151 ORTHO05D006836 9.0e-13 77.4 102 46.1
CARHR178560 Cardamine hirsuta HOM05D001151 ORTHO05D006836 2.0e-12 76.3 106 41.5
Gohir.A06G119400 Gossypium hirsutum HOM05D001151 ORTHO05D006836 2.6e-12 75.9 90 45.6
Lj6g0010921 Lotus japonicus HOM05D001151 ORTHO05D006836 2.6e-12 75.9 111 41.4
Gorai.010G144000 Gossypium raimondii HOM05D001151 ORTHO05D006836 4.4e-12 75.1 90 45.6
PSO675G9129 Papaver somniferum HOM05D001151 ORTHO05D006836 5.8e-12 74.7 94 44.7
HanXRQChr11g0342571 Helianthus annuus HOM05D001151 ORTHO05D006836 9.9e-12 73.9 97 43.3
PSO541G3810 Papaver somniferum HOM05D001151 ORTHO05D006836 9.9e-12 73.9 94 42.6
PSO541G5365 Papaver somniferum HOM05D001151 ORTHO05D006836 9.9e-12 73.9 94 42.6
Lj2A338T75 Lonicera japonica HOM05D001151 ORTHO05D006836 1.7e-11 73.2 105 40.0
Haze_05971 Corylus avellana HOM05D001151 ORTHO05D006836 6.4e-11 71.2 122 44.3
SGA_v2.0_scaffold223G42882 Striga asiatica HOM05D001151 ORTHO05D006836 1.4e-10 70.1 120 36.7
MD05G1263600 Malus domestica HOM05D001151 ORTHO05D006836 1.9e-10 69.7 99 39.4
arahy.Tifrunner.gnm1.ann1.1BVQ2L Arachis hypogaea HOM05D001151 ORTHO05D006836 7.1e-10 67.8 75 42.7
FAN21G1456 Fragaria x ananassa HOM05D004135 ORTHO05D005558 7.8e-09 64.3 91 46.2
Glyma.09G083400 Glycine max HOM05D001151 ORTHO05D006836 1.3e-08 63.5 76 46.1
MBI18_g28206_MAGBIO Magnolia biondii HOM05D001151 ORTHO05D006836 8.7e-08 60.8 77 46.8
Os12g0610800 Oryza sativa ssp. japonica HOM05D001151 ORTHO05D006836 5.6e-07 58.2 76 43.4
Hma1.2p1_1028F.1_g249560 Hydrangea macrophylla HOM05D001151 ORTHO05D006836 2.1e-06 56.2 49 59.2
Hma1.2p1_1485F.1_g286490 Hydrangea macrophylla HOM05D001151 ORTHO05D006836 2.1e-06 56.2 49 59.2
ATR1098G060 Amborella trichopoda HOM05D001151 ORTHO05D006836 4.8e-06 55.1 72 48.6


User provided reference genes

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