Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0003040 Simmondsia chinensis HOM05D006345 ORTHO05D007428 3.0e-145 518.5 257 100.0
CiPaw.01G263700 Carya illinoinensis HOM05D006345 ORTHO05D007428 4.7e-106 388.3 251 75.7
Psat7g230920 Pisum sativum HOM05D006345 ORTHO05D007428 4.7e-106 388.3 252 73.8
Nn3g17198 Nelumbo nucifera HOM05D006345 ORTHO05D007428 8.0e-106 387.5 251 74.1
TAR624G0710 Trochodendron aralioides HOM05D006345 ORTHO05D007428 8.0e-106 387.5 253 73.9
Dinv19690 Davidia involucrata HOM05D006345 ORTHO05D007428 2.0e-104 382.9 258 75.6
Sed0017834 Sechium edule HOM05D006345 ORTHO05D007428 9.8e-104 380.6 253 73.9
Ciclev10016345m.g Citrus clementina HOM05D006345 ORTHO05D007428 1.3e-103 380.2 257 71.6
Aqoxy7G02153 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 2.8e-103 379.0 252 70.6
QL08p052794 Quercus lobata HOM05D006345 ORTHO05D007428 2.8e-103 379.0 258 73.6
Phvul.003G037201 Phaseolus vulgaris HOM05D006345 ORTHO05D007428 4.9e-103 378.3 252 73.8
ClCG02G007550 Citrullus lanatus HOM05D006345 ORTHO05D007428 1.8e-102 376.3 251 72.9
CSS0008102 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 5.4e-102 374.8 250 74.0
CsaV3_7G007230 Cucumis sativus L. HOM05D006345 ORTHO05D007428 2.0e-101 372.9 253 71.9
Duzib212G0272 Durio zibethinus HOM05D006345 ORTHO05D007428 2.0e-101 372.9 252 72.6
Sed0021159 Sechium edule HOM05D006345 ORTHO05D007428 4.5e-101 371.7 251 72.1
TPR.G7580 Trifolium pratense HOM05D006345 ORTHO05D007428 4.5e-101 371.7 252 72.6
MELO3C018575.2 Cucumis melo HOM05D006345 ORTHO05D007428 5.9e-101 371.3 251 72.1
EL10Ac3g05939 Beta vulgaris HOM05D006345 ORTHO05D007428 2.9e-100 369.0 257 69.6
Lj3g0013440 Lotus japonicus HOM05D006345 ORTHO05D007428 2.9e-100 369.0 252 72.2
Lalb_Chr07g0189941 Lupinus albus HOM05D006345 ORTHO05D007428 3.8e-100 368.6 252 72.2
Manes.16G061100 Manihot esculenta HOM05D006345 ORTHO05D007428 3.8e-100 368.6 252 70.6
Nitab4.5_0008647g0020 Nicotiana tabacum HOM05D006345 ORTHO05D007428 1.5e-99 366.7 219 80.4
Peaxi162Scf00062g10131 Petunia axillaris HOM05D006345 ORTHO05D007428 1.5e-99 366.7 217 81.1
RcHm_v2.0_Chr5g0022101 Rosa chinensis HOM05D006345 ORTHO05D007428 1.5e-99 366.7 254 70.9
VMungo1383G2204 Vigna mungo HOM05D006345 ORTHO05D007428 1.5e-99 366.7 252 71.8
Ca_19950_v3 Cicer arietinum L. HOM05D006345 ORTHO05D007428 1.9e-99 366.3 253 70.8
MBI16_g30839_MAGBIO Magnolia biondii HOM05D006345 ORTHO05D007428 2.5e-99 365.9 245 72.2
Rhsim13G0136400 Rhododendron simsii HOM05D006345 ORTHO05D007428 2.5e-99 365.9 258 71.7
Lalb_Chr13g0291791 Lupinus albus HOM05D006345 ORTHO05D007428 3.3e-99 365.5 254 72.0
Prupe.4G121300 Prunus persica HOM05D006345 ORTHO05D007428 3.3e-99 365.5 252 71.4
FvH4_3g13390 Fragaria vesca HOM05D006345 ORTHO05D007428 4.3e-99 365.2 254 70.5
FAN21G0075 Fragaria x ananassa HOM05D006345 ORTHO05D007428 5.6e-99 364.8 254 70.5
Glyma.01G139633 Glycine max HOM05D006345 ORTHO05D007428 5.6e-99 364.8 253 71.9
Sabra01G0052000 Salix brachista HOM05D006345 ORTHO05D007428 7.3e-99 364.4 252 69.0
Medtr4g024860 Medicago truncatula HOM05D000001 ORTHO05D000003 9.5e-99 364.0 252 70.6
Cpa.g.sc12.137 Carica papaya HOM05D006345 ORTHO05D007428 1.2e-98 363.6 254 70.5
Nitab4.5_0001925g0110 Nicotiana tabacum HOM05D006345 ORTHO05D007428 1.2e-98 363.6 219 78.5
Ah.07g202050 Amaranthus hybridus HOM05D006345 ORTHO05D007428 2.1e-98 362.8 258 68.6
Thecc.04G283900 Theobroma cacao HOM05D006345 ORTHO05D007428 2.1e-98 362.8 257 69.3
FAN11G3812 Fragaria x ananassa HOM05D006345 ORTHO05D007428 2.8e-98 362.5 254 70.1
Glyma.03G027700 Glycine max HOM05D006345 ORTHO05D007428 3.6e-98 362.1 252 71.4
PSO675G7514 Papaver somniferum HOM05D006345 ORTHO05D007428 3.6e-98 362.1 264 69.3
AUR62015383 Chenopodium quinoa HOM05D006345 ORTHO05D007428 6.1e-98 361.3 255 69.8
Cc09_g04580 Coffea canephora HOM05D006345 ORTHO05D007428 6.1e-98 361.3 250 69.6
DCAR_001254 Daucus carota HOM05D006345 ORTHO05D007428 6.1e-98 361.3 253 69.2
arahy.Tifrunner.gnm1.ann1.P3RVZQ Arachis hypogaea HOM05D006345 ORTHO05D007428 1.4e-97 360.1 256 71.1
FAN25G2350 Fragaria x ananassa HOM05D006345 ORTHO05D007428 1.4e-97 360.1 254 69.7
Potri.001G073700 Populus trichocarpa HOM05D006345 ORTHO05D007428 1.4e-97 360.1 252 68.7
arahy.Tifrunner.gnm1.ann1.G9BQRV Arachis hypogaea HOM05D006345 ORTHO05D007428 1.8e-97 359.8 253 69.6
COL.COLO4_13882 Corchorus olitorius HOM05D006345 ORTHO05D007428 1.8e-97 359.8 257 69.6
Oeu012935.1 Olea europaea HOM05D006345 ORTHO05D007428 6.8e-97 357.8 218 76.6
Cc06_g02140 Coffea canephora HOM05D006345 ORTHO05D007428 8.9e-97 357.5 257 67.7
ECA238G2485 Erigeron canadensis HOM05D006345 ORTHO05D007428 8.9e-97 357.5 248 70.2
PGSC0003DMG400023836 Solanum tuberosum HOM05D006345 ORTHO05D007428 8.9e-97 357.5 218 78.4
arahy.Tifrunner.gnm1.ann1.S1VR06 Arachis hypogaea HOM05D006345 ORTHO05D007428 1.2e-96 357.1 253 69.2
CAN.G575.62 Capsicum annuum HOM05D006345 ORTHO05D007428 1.2e-96 357.1 221 76.9
MD05G1242200 Malus domestica HOM05D006345 ORTHO05D007428 1.5e-96 356.7 257 69.3
Gorai.011G189500 Gossypium raimondii HOM05D006345 ORTHO05D007428 2.0e-96 356.3 257 67.3
Oeu017184.1 Olea europaea HOM05D006345 ORTHO05D007428 2.0e-96 356.3 218 77.5
CiPaw.14G048700 Carya illinoinensis HOM05D006345 ORTHO05D007428 2.6e-96 355.9 232 75.0
PSO541G0968 Papaver somniferum HOM05D006345 ORTHO05D007428 3.4e-96 355.5 264 68.9
Aqoxy3G02382 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 4.4e-96 355.1 223 74.0
Gohir.A10G163600 Gossypium hirsutum HOM05D006345 ORTHO05D007428 4.4e-96 355.1 251 68.5
TWI53G2073 Tripterygium wilfordii HOM05D006345 ORTHO05D007428 4.4e-96 355.1 254 66.9
arahy.Tifrunner.gnm1.ann1.W97VC3 Arachis hypogaea HOM05D006345 ORTHO05D007428 7.5e-96 354.4 253 68.8
CANSAT11G1250 Cannabis sativa HOM05D006345 ORTHO05D007428 1.7e-95 353.2 219 77.6
PGR042G3945 Punica granatum HOM05D006345 ORTHO05D007428 1.7e-95 353.2 256 67.6
Ah.15g099610 Amaranthus hybridus HOM05D006345 ORTHO05D007428 2.9e-95 352.4 258 67.1
HanXRQChr14g0447431 Helianthus annuus HOM05D006345 ORTHO05D007428 3.7e-95 352.1 248 68.1
SalBow7G0027 Salvia bowleyana HOM05D006345 ORTHO05D007428 4.9e-95 351.7 215 76.7
FAN16G3736 Fragaria x ananassa HOM05D006345 ORTHO05D007428 6.4e-95 351.3 254 68.9
Gohir.D10G170000 Gossypium hirsutum HOM05D006345 ORTHO05D007428 1.1e-94 350.5 257 65.8
THA.LOC104822694 Tarenaya hassleriana HOM05D006345 ORTHO05D007428 1.8e-94 349.7 257 67.3
MSTRG.21400 Avicennia marina HOM05D006345 ORTHO05D007428 1.2e-93 347.1 217 75.1
SalBow2G1193 Salvia bowleyana HOM05D006345 ORTHO05D007428 3.5e-93 345.5 224 73.7
PSO782G3410 Papaver somniferum HOM05D006345 ORTHO05D007428 4.6e-93 345.1 222 76.6
Sopen12g034690 Solanum pennellii HOM05D006345 ORTHO05D007428 1.0e-92 344.0 218 75.7
CDE04G1044 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 2.3e-92 342.8 252 67.1
Migut.D00572 Erythranthe guttata HOM05D006345 ORTHO05D007428 3.0e-92 342.4 218 72.5
Eucgr.F03783 Eucalyptus grandis HOM05D006345 ORTHO05D007428 2.5e-91 339.3 255 66.3
CDE06G0136 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 9.5e-91 337.4 212 75.0
unitig_52.g17581 Utricularia gibba HOM05D006345 ORTHO05D007428 9.5e-91 337.4 228 71.1
Lsat_1_v5_gn_3_103240 Lactuca sativa HOM05D006345 ORTHO05D007428 2.1e-90 336.3 216 75.0
AL3G25340 Arabidopsis lyrata HOM05D006345 ORTHO05D007428 7.5e-88 327.8 226 69.9
AT3G13440 Arabidopsis thaliana HOM05D006345 ORTHO05D007428 9.8e-88 327.4 226 69.0
SGA_v2.0_scaffold8G04616 Striga asiatica HOM05D006345 ORTHO05D007428 2.2e-87 326.2 220 70.0
Thhalv10021414m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 2.9e-87 325.9 237 65.8
ATR0561G247 Amborella trichopoda HOM05D006345 ORTHO05D007428 3.7e-87 325.5 246 63.8
BcaC09g48312 Brassica carinata HOM05D006345 ORTHO05D007428 6.4e-87 324.7 227 68.7
C01p51620 Brassica napus HOM05D006345 ORTHO05D007428 6.4e-87 324.7 227 68.7
BolC1t05105H Brassica oleracea HOM05D006345 ORTHO05D007428 6.4e-87 324.7 227 68.7
CARHR088090 Cardamine hirsuta HOM05D006345 ORTHO05D007428 6.4e-87 324.7 216 71.8
Carub.0006s3398 Capsella rubella HOM05D006345 ORTHO05D007428 1.4e-86 323.6 244 63.9
Aa31LG8G650 Aethionema arabicum HOM05D006345 ORTHO05D007428 1.9e-86 323.2 214 71.5
Carub.0003s1288 Capsella rubella HOM05D006345 ORTHO05D007428 1.9e-86 323.2 235 68.1
Sp3g11640 Schrenkiella parvula HOM05D006345 ORTHO05D007428 4.1e-86 322.0 241 67.2
BcaB04g21015 Brassica carinata HOM05D006345 ORTHO05D007428 7.0e-86 321.2 241 65.6
A01p40130 Brassica napus HOM05D006345 ORTHO05D007428 2.7e-85 319.3 227 67.4
BraA01t04054Z Brassica rapa HOM05D006345 ORTHO05D007428 4.6e-85 318.5 227 67.0
HPP92_018755 Vanilla planifolia HOM05D006345 ORTHO05D007428 7.8e-85 317.8 209 69.9
Mapoly0069s0066 Marchantia polymorpha HOM05D006345 ORTHO05D007428 1.0e-84 317.4 245 61.6
BraA05t22416Z Brassica rapa HOM05D002140 ORTHO05D007428 3.9e-84 315.5 240 65.0
Pp3c9_17440 Physcomitrium patens HOM05D006345 ORTHO05D007428 5.6e-83 311.6 245 60.4
A05p36090 Brassica napus HOM05D002140 ORTHO05D007428 7.3e-83 311.2 240 63.8
BcaC05g29179 Brassica carinata HOM05D002140 ORTHO05D007428 1.2e-82 310.5 240 64.2
C05p54470 Brassica napus HOM05D002140 ORTHO05D007428 1.2e-82 310.5 240 64.2
BolC5t34114H Brassica oleracea HOM05D002140 ORTHO05D007428 1.2e-82 310.5 240 64.2
SHI16738 Sapria himalayana HOM05D006345 ORTHO05D007428 1.4e-81 307.0 209 70.8
AUR62002307 Chenopodium quinoa HOM05D006345 ORTHO05D007428 1.8e-81 306.6 258 62.0
Os03g0824200 Oryza sativa ssp. japonica HOM05D006345 ORTHO05D007428 3.1e-81 305.8 210 69.5
Lsat_1_v5_gn_2_63801 Lactuca sativa HOM05D006345 ORTHO05D007428 1.2e-80 303.9 250 61.2
Zm00001eb211470 Zea mays HOM05D006345 ORTHO05D007428 2.6e-80 302.8 210 68.6
SMO358G0200 Selaginella moellendorffii HOM05D006345 ORTHO05D007428 6.6e-76 288.1 210 64.3
Solyc12g100070.3 Solanum lycopersicum HOM05D006345 ORTHO05D007428 6.6e-76 288.1 185 74.1
CBR_g45447 Chara braunii HOM05D006345 ORTHO05D007428 9.5e-75 284.3 249 57.4
Thhalv10009961m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 2.3e-73 279.6 234 61.5
AagrBONN_evm.TU.Sc2ySwM_117.4015 Anthoceros agrestis HOM05D006345 ORTHO05D007428 6.8e-73 278.1 248 56.9
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 4.0e-65 252.3 186 65.6
SEGI_21458 Sequoiadendron giganteum HOM05D006345 ORTHO05D007428 5.1e-60 235.3 161 72.0
CAN.G1126.44 Capsicum annuum HOM05D006345 ORTHO05D007428 2.2e-47 193.4 148 63.5
Zm00001eb141630 Zea mays HOM05D006345 ORTHO05D007428 5.5e-46 188.7 144 64.6
Cre01.g036750 Chlamydomonas reinhardtii HOM05D006345 ORTHO05D007428 5.6e-43 178.7 212 44.8
CSS0000171 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 1.6e-42 177.2 138 65.9
Potri.003G157201 Populus trichocarpa HOM05D006345 ORTHO05D007428 1.9e-35 153.7 113 64.6
MCO02G297 Micromonas commoda HOM05D006345 ORTHO05D007428 2.2e-31 140.2 174 41.4
Zm00001eb356470 Zea mays HOM05D006345 ORTHO05D007428 9.3e-30 134.8 100 65.0
Sabra03G0114100 Salix brachista HOM05D000029 ORTHO05D000854 8.7e-28 128.3 190 40.0
ATR0006G036 Amborella trichopoda HOM05D006345 ORTHO05D007428 1.1e-11 74.7 48 70.8
Lj1P1152T38 Lonicera japonica HOM05D006345 ORTHO05D007428 5.7e-11 72.4 52 63.5
GSVIVG01023955001 Vitis vinifera HOM05D000593 ORTHO05D000562 6.5e-07 58.9 48 58.3
Cfa025913 Carpinus fangiana HOM05D006345 ORTHO05D007428 8.5e-07 58.5 221 28.1


User provided reference genes

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