Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0002910 Simmondsia chinensis HOM05D002234 ORTHO05D002254 6.9e-87 323.9 163 100.0
Sc01g0007250 Simmondsia chinensis HOM05D002234 ORTHO05D002254 1.4e-39 166.8 173 60.7
Sc04g0001050 Simmondsia chinensis HOM05D002234 ORTHO05D002254 3.7e-32 142.1 119 67.2
Ah.07g200830 Amaranthus hybridus HOM05D002234 ORTHO05D002254 5.2e-18 95.1 165 47.3
AUR62018654 Chenopodium quinoa HOM05D002234 ORTHO05D002254 1.5e-17 93.6 120 50.8
BraA05t19964Z Brassica rapa HOM05D002234 ORTHO05D002254 4.4e-17 92.0 140 44.3
BcaB02g09425 Brassica carinata HOM05D002234 ORTHO05D002254 7.5e-17 91.3 116 44.8
CAN.G726.26 Capsicum annuum HOM05D002234 ORTHO05D002254 1.3e-16 90.5 150 42.7
Nitab4.5_0000809g0050 Nicotiana tabacum HOM05D002234 ORTHO05D002254 2.9e-16 89.4 145 42.8
Oeu028866.1 Olea europaea HOM05D002234 ORTHO05D002254 8.3e-16 87.8 200 36.5
Sopen08g025060 Solanum pennellii HOM05D002234 ORTHO05D002254 8.3e-16 87.8 160 41.2
Nn3g19404 Nelumbo nucifera HOM05D002234 ORTHO05D002254 1.1e-15 87.4 121 41.3
A05p10240 Brassica napus HOM05D002234 ORTHO05D002254 1.9e-15 86.7 140 42.1
PGR031G3822 Punica granatum HOM05D002234 ORTHO05D002254 1.9e-15 86.7 194 39.2
Solyc08g076480.3 Solanum lycopersicum HOM05D002234 ORTHO05D002254 1.9e-15 86.7 160 41.2
SalBow6G4971 Salvia bowleyana HOM05D002234 ORTHO05D002254 4.1e-15 85.5 169 40.8
Nitab4.5_0000529g0070 Nicotiana tabacum HOM05D002234 ORTHO05D002254 2.0e-14 83.2 174 40.2
ClCG10G001350 Citrullus lanatus HOM05D002234 ORTHO05D002254 3.5e-14 82.4 176 38.6
RcHm_v2.0_Chr7g0211641 Rosa chinensis HOM05D002234 ORTHO05D002254 6.0e-14 81.6 181 40.3
Sed0005477 Sechium edule HOM05D002234 ORTHO05D002254 6.0e-14 81.6 146 38.4
Hma1.2p1_0572F.1_g181250 Hydrangea macrophylla HOM05D002234 ORTHO05D002254 7.8e-14 81.3 184 37.5
MD06G1025700 Malus domestica HOM05D002234 ORTHO05D002254 7.8e-14 81.3 179 39.1
BcaC02g11654 Brassica carinata HOM05D002234 ORTHO05D002254 1.3e-13 80.5 183 36.1
C04p12690 Brassica napus HOM05D002234 ORTHO05D002254 1.3e-13 80.5 183 36.1
BolC4t22917H Brassica oleracea HOM05D002234 ORTHO05D002254 1.3e-13 80.5 183 36.1
TAR375G0159 Trochodendron aralioides HOM05D002234 ORTHO05D002254 1.3e-13 80.5 150 36.0
CsaV3_3G001420 Cucumis sativus L. HOM05D002234 ORTHO05D002254 2.3e-13 79.7 171 36.3
Lalb_Chr16g0381141 Lupinus albus HOM05D002234 ORTHO05D002254 2.3e-13 79.7 129 37.2
Sp4g17710 Schrenkiella parvula HOM05D002234 ORTHO05D002254 2.3e-13 79.7 105 45.7
MELO3C013828.2 Cucumis melo HOM05D002234 ORTHO05D002254 3.0e-13 79.3 201 35.8
PGSC0003DMG402014796 Solanum tuberosum HOM05D002234 ORTHO05D002254 3.0e-13 79.3 210 35.2
Ciclev10002003m.g Citrus clementina HOM05D002234 ORTHO05D002254 3.9e-13 79.0 133 41.4
Manes.17G014600 Manihot esculenta HOM05D002234 ORTHO05D002254 3.9e-13 79.0 175 36.6
Sabra03G0064700 Salix brachista HOM05D002234 ORTHO05D002254 3.9e-13 79.0 121 38.0
Cpa.g.sc90.8 Carica papaya HOM05D002234 ORTHO05D002254 1.1e-12 77.4 170 38.8
CANSAT21G1663 Cannabis sativa HOM05D002234 ORTHO05D002254 1.5e-12 77.0 202 33.7
VMungo1215G0334 Vigna mungo HOM05D002234 ORTHO05D002254 1.5e-12 77.0 165 36.4
MD16G1280700 Malus domestica HOM05D002234 ORTHO05D002254 1.9e-12 76.6 169 36.7
FAN04G0881 Fragaria x ananassa HOM05D002234 ORTHO05D002254 3.3e-12 75.9 145 40.0
Prupe.5G029300 Prunus persica HOM05D002234 ORTHO05D002254 4.3e-12 75.5 176 37.5
vmacro00289 Vaccinium macrocarpon HOM05D002234 ORTHO05D002254 4.3e-12 75.5 118 41.5
CARHR129640 Cardamine hirsuta HOM05D002234 ORTHO05D002254 5.6e-12 75.1 183 36.6
Cc08_g03380 Coffea canephora HOM05D002234 ORTHO05D002254 5.6e-12 75.1 171 37.4
TWI81G0224 Tripterygium wilfordii HOM05D002234 ORTHO05D002254 5.6e-12 75.1 136 36.8
FAN13G2743 Fragaria x ananassa HOM05D002234 ORTHO05D002254 1.6e-11 73.6 149 38.9
AL4G31540 Arabidopsis lyrata HOM05D002234 ORTHO05D002254 2.1e-11 73.2 200 33.0
FAN08G1341 Fragaria x ananassa HOM05D002234 ORTHO05D002254 2.1e-11 73.2 184 39.1
COL.COLO4_16956 Corchorus olitorius HOM05D002234 ORTHO05D002254 2.8e-11 72.8 157 33.8
FAN18G2745 Fragaria x ananassa HOM05D002234 ORTHO05D002254 3.6e-11 72.4 145 38.6
FAN18G4293 Fragaria x ananassa HOM05D002234 ORTHO05D002254 3.6e-11 72.4 145 38.6
Gohir.A09G199900 Gossypium hirsutum HOM05D002234 ORTHO05D002254 3.6e-11 72.4 170 33.5
Actinidia09173 Actinidia chinensis HOM05D002234 ORTHO05D002254 6.2e-11 71.6 220 32.7
Thhalv10016800m.g Eutrema salsugineum HOM05D002234 ORTHO05D002254 8.0e-11 71.2 174 35.1
FvH4_5g22910 Fragaria vesca HOM05D002234 ORTHO05D002254 1.4e-10 70.5 145 38.6
Potri.003G095900 Populus trichocarpa HOM05D002234 ORTHO05D002254 1.4e-10 70.5 190 32.1
Haze_08136 Corylus avellana HOM05D002234 ORTHO05D002254 1.8e-10 70.1 199 34.2
Duzib205G1709 Durio zibethinus HOM05D002234 ORTHO05D002254 1.8e-10 70.1 173 32.9
Gohir.D09G194200 Gossypium hirsutum HOM05D002234 ORTHO05D002254 1.8e-10 70.1 172 31.4
Lj2g0015926 Lotus japonicus HOM05D002234 ORTHO05D002254 1.8e-10 70.1 186 35.5
Phvul.002G137800 Phaseolus vulgaris HOM05D002234 ORTHO05D002254 1.8e-10 70.1 164 36.0
Lj2A233G30 Lonicera japonica HOM05D002234 ORTHO05D002254 2.3e-10 69.7 125 37.6
Hund11194 Selenicereus undatus HOM05D002234 ORTHO05D002254 2.3e-10 69.7 190 35.3
Atru.chr6.1613 Acer truncatum HOM05D002234 ORTHO05D002254 5.2e-10 68.6 186 32.3
Rhsim11G0020200 Rhododendron simsii HOM05D002234 ORTHO05D002254 8.9e-10 67.8 177 33.9
CAN.G137.5 Capsicum annuum HOM05D002234 ORTHO05D002254 1.5e-09 67.0 110 45.5
Hund14366 Selenicereus undatus HOM05D002234 ORTHO05D002254 1.5e-09 67.0 46 71.7
ECA246G1777 Erigeron canadensis HOM05D002234 ORTHO05D002254 2.0e-09 66.6 194 31.4
Gorai.006G217700 Gossypium raimondii HOM05D002234 ORTHO05D002254 2.0e-09 66.6 179 30.2
EL10Ac5g12026 Beta vulgaris HOM05D002234 ORTHO05D002254 2.6e-09 66.2 98 44.9
Ca_25189_v3 Cicer arietinum L. HOM05D002234 ORTHO05D002254 2.6e-09 66.2 183 33.9
SEGI_07464 Sequoiadendron giganteum HOM05D002234 ORTHO05D002254 3.4e-09 65.9 113 36.3
CSS0028378 Camellia sinensis var. sinensis HOM05D002234 ORTHO05D002254 4.4e-09 65.5 189 32.3
DCAR_008235 Daucus carota HOM05D002234 ORTHO05D002254 4.4e-09 65.5 174 34.5
Eucgr.D02221 Eucalyptus grandis HOM05D002234 ORTHO05D002254 4.4e-09 65.5 174 35.6
Potri.001G137900 Populus trichocarpa HOM05D002234 ORTHO05D002254 7.5e-09 64.7 169 33.7
Nitab4.5_0002778g0050 Nicotiana tabacum HOM05D002234 ORTHO05D002254 9.8e-09 64.3 44 70.5
Migut.A01084 Erythranthe guttata HOM05D002234 ORTHO05D002254 1.3e-08 63.9 156 39.1
THA.LOC104798488 Tarenaya hassleriana HOM05D002234 ORTHO05D002254 1.3e-08 63.9 177 30.5
Actinidia14784 Actinidia chinensis HOM05D002234 ORTHO05D002254 1.7e-08 63.5 46 69.6
MSTRG.12171 Avicennia marina HOM05D002234 ORTHO05D002254 1.7e-08 63.5 181 33.7
Nitab4.5_0000556g0170 Nicotiana tabacum HOM05D002234 ORTHO05D002254 1.7e-08 63.5 45 66.7
HanXRQChr06g0172671 Helianthus annuus HOM05D002234 ORTHO05D002254 2.2e-08 63.2 152 33.6
Cfa012526 Carpinus fangiana HOM05D002234 ORTHO05D002254 2.9e-08 62.8 195 34.4
Medtr5g029590 Medicago truncatula HOM05D002234 ORTHO05D002254 3.7e-08 62.4 170 33.5
SGA_v2.0_scaffold198G41081 Striga asiatica HOM05D002234 ORTHO05D002254 3.7e-08 62.4 132 40.9
Psat6g091120 Pisum sativum HOM05D002234 ORTHO05D002254 4.9e-08 62.0 189 32.8
Atru.chr10.2317 Acer truncatum HOM05D002234 ORTHO05D002254 6.4e-08 61.6 98 40.8
AT2G35490 Arabidopsis thaliana HOM05D002234 ORTHO05D002254 6.4e-08 61.6 190 32.6
Zm00001eb024700 Zea mays HOM05D002234 ORTHO05D002254 6.4e-08 61.6 112 38.4
CSS0013190 Camellia sinensis var. sinensis HOM05D002234 ORTHO05D002254 1.1e-07 60.8 46 65.2
CSS0050044 Camellia sinensis var. sinensis HOM05D002234 ORTHO05D002254 1.1e-07 60.8 46 65.2
TAR119G0001 Trochodendron aralioides HOM05D002234 ORTHO05D002254 1.1e-07 60.8 187 34.8
GSVIVG01013072001 Vitis vinifera HOM05D002234 ORTHO05D002254 1.4e-07 60.5 46 63.0
Lsat_1_v5_gn_3_19641 Lactuca sativa HOM05D002234 ORTHO05D001491 1.9e-07 60.1 197 31.5
TPR.G8085 Trifolium pratense HOM05D002234 ORTHO05D002254 3.2e-07 59.3 176 34.1
Aa31LG9G15480 Aethionema arabicum HOM05D002234 ORTHO05D002254 4.1e-07 58.9 46 63.0
CDE04G1021 Ceratophyllum demersum HOM05D002234 ORTHO05D002254 4.1e-07 58.9 93 40.9
QL12p001328 Quercus lobata HOM05D002234 ORTHO05D002254 4.1e-07 58.9 46 65.2
PGSC0003DMG400021072 Solanum tuberosum HOM05D002234 ORTHO05D002254 4.1e-07 58.9 46 67.4
Carub.0004s1718 Capsella rubella HOM05D002234 ORTHO05D002254 5.4e-07 58.5 46 63.0
PSO063G3420 Papaver somniferum HOM05D002234 ORTHO05D002254 7.1e-07 58.2 46 58.7
CDE02G1255 Ceratophyllum demersum HOM05D002234 ORTHO05D002254 9.2e-07 57.8 46 54.3
arahy.Tifrunner.gnm1.ann1.8TZ93N Arachis hypogaea HOM05D002234 ORTHO05D002254 1.2e-06 57.4 46 54.3
arahy.Tifrunner.gnm1.ann1.WG05AL Arachis hypogaea HOM05D002234 ORTHO05D002254 1.2e-06 57.4 46 54.3
vmacro14194 Vaccinium macrocarpon HOM05D002234 ORTHO05D002254 1.2e-06 57.4 42 64.3
PSO782G4319 Papaver somniferum HOM05D002234 ORTHO05D002254 1.6e-06 57.0 46 58.7
Solyc08g005220.4 Solanum lycopersicum HOM05D002234 ORTHO05D002254 1.6e-06 57.0 46 65.2
Sopen08g001250 Solanum pennellii HOM05D002234 ORTHO05D002254 2.1e-06 56.6 46 65.2
Rhsim07G0131300 Rhododendron simsii HOM05D002234 ORTHO05D002254 2.7e-06 56.2 46 58.7
AagrBONN_evm.TU.Sc2ySwM_369.590 Anthoceros agrestis HOM05D002234 ORTHO05D002254 3.5e-06 55.8 45 60.0
Duzib235G1028 Durio zibethinus HOM05D002234 ORTHO05D002254 3.5e-06 55.8 125 35.2
ATR0829G030 Amborella trichopoda HOM05D002234 ORTHO05D002254 4.6e-06 55.5 45 62.2
Oeu026233.1 Olea europaea HOM05D002234 ORTHO05D002254 4.6e-06 55.5 89 40.4
Aqoxy3G02205 Aquilegia oxysepala HOM05D002234 ORTHO05D002254 6.0e-06 55.1 195 35.4
CDE07G0233 Ceratophyllum demersum HOM05D002234 ORTHO05D002254 6.0e-06 55.1 94 40.4
CBR_g49209 Chara braunii HOM05D002234 ORTHO05D002254 6.0e-06 55.1 41 63.4
Medtr2g025040 Medicago truncatula HOM05D002234 ORTHO05D002254 6.0e-06 55.1 87 39.1


User provided reference genes

Program Settings