Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 1.8e-229 798.9 395 100.0
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 7.3e-199 697.2 396 85.4
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 5.6e-191 671.0 401 82.3
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 1.8e-189 666.0 397 80.9
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 2.3e-189 665.6 396 82.3
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 4.0e-189 664.8 397 82.4
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 8.9e-189 663.7 392 80.9
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 1.5e-188 662.9 396 80.8
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 2.6e-188 662.1 397 81.9
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 4.4e-188 661.4 396 79.8
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 7.5e-188 660.6 396 81.8
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 1.3e-187 659.8 396 80.6
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 1.7e-187 659.4 396 81.3
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 1.7e-187 659.4 397 80.6
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 2.9e-187 658.7 397 81.1
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 2.9e-187 658.7 396 81.6
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 2.9e-187 658.7 400 79.8
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 2.9e-187 658.7 401 80.3
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 3.7e-187 658.3 395 79.7
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 6.4e-187 657.5 393 80.4
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 1.1e-186 656.8 397 79.3
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 1.9e-186 656.0 397 79.8
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 3.2e-186 655.2 401 79.8
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 3.2e-186 655.2 398 79.6
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 4.1e-186 654.8 398 79.9
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 5.4e-186 654.4 401 79.6
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 7.0e-186 654.1 398 79.9
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 1.2e-185 653.3 397 80.4
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 2.7e-185 652.1 398 79.6
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 3.5e-185 651.7 396 79.3
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 3.5e-185 651.7 397 78.3
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 4.6e-185 651.4 398 80.4
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 6.0e-185 651.0 392 81.6
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 6.0e-185 651.0 396 78.5
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 1.3e-184 649.8 392 81.1
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 1.7e-184 649.4 396 80.1
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 1.7e-184 649.4 401 79.1
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 5.0e-184 647.9 400 77.8
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 6.6e-184 647.5 396 78.8
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 6.6e-184 647.5 400 79.5
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 1.1e-183 646.7 396 79.0
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 1.2e-182 643.3 392 80.4
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 1.2e-182 643.3 397 77.3
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 1.6e-182 642.9 400 77.0
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 2.8e-182 642.1 396 78.3
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 2.8e-182 642.1 397 78.6
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 3.6e-182 641.7 364 86.5
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 4.7e-182 641.3 396 79.0
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 6.2e-182 641.0 400 76.8
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 6.2e-182 641.0 400 76.8
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 8.1e-182 640.6 394 78.9
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 1.4e-181 639.8 400 77.2
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 4.0e-181 638.3 400 77.0
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 5.2e-181 637.9 396 77.3
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 6.8e-181 637.5 400 77.2
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 6.8e-181 637.5 398 78.6
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 1.5e-180 636.3 406 76.8
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 2.0e-180 636.0 401 78.3
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 2.0e-180 636.0 390 80.8
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 9.9e-180 633.6 397 76.3
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 1.3e-179 633.3 420 74.3
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 6.4e-179 630.9 391 78.0
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 1.1e-178 630.2 419 74.0
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 1.4e-178 629.8 395 78.2
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 3.2e-178 628.6 394 79.4
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 3.2e-178 628.6 410 76.1
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 5.4e-178 627.9 397 76.3
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 7.1e-178 627.5 389 78.4
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 9.2e-178 627.1 432 73.4
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 9.2e-178 627.1 397 75.6
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 3.5e-177 625.2 398 77.4
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 3.5e-177 625.2 398 77.1
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 6.0e-177 624.4 396 76.5
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 1.0e-176 623.6 400 74.2
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 1.3e-176 623.2 400 74.2
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 1.3e-176 623.2 401 74.6
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 1.7e-176 622.9 400 74.2
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 2.3e-176 622.5 400 74.0
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 2.3e-176 622.5 400 74.0
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 3.0e-176 622.1 400 73.8
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 3.9e-176 621.7 388 78.6
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 1.5e-175 619.8 400 74.2
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 5.6e-175 617.8 401 73.8
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 1.2e-174 616.7 400 73.8
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 1.6e-174 616.3 400 73.8
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 1.6e-174 616.3 400 73.8
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 2.1e-174 615.9 400 73.5
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 2.1e-174 615.9 399 73.7
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 2.1e-174 615.9 400 73.8
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 2.8e-174 615.5 400 74.0
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 1.4e-173 613.2 400 73.2
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 1.4e-173 613.2 386 75.1
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 2.4e-173 612.5 399 73.2
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 3.1e-173 612.1 400 73.0
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 3.1e-173 612.1 401 76.1
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 4.0e-173 611.7 381 75.6
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 4.0e-173 611.7 386 74.9
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 5.2e-173 611.3 399 73.2
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 8.9e-173 610.5 493 65.3
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 3.4e-172 608.6 395 73.9
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 1.7e-171 606.3 381 75.1
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 2.9e-171 605.5 391 74.7
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 4.1e-170 601.7 397 76.1
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 7.8e-169 597.4 362 79.8
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 2.5e-167 592.4 437 68.0
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 5.6e-167 591.3 442 67.6
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 3.6e-166 588.6 414 70.0
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 3.4e-164 582.0 452 67.9
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 1.2e-161 573.5 549 56.8
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 6.0e-161 571.2 400 70.0
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 2.1e-158 562.8 362 73.8
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 4.8e-158 561.6 351 78.9
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 3.5e-153 545.4 309 83.8
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.6e-145 520.0 328 79.3
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 9.0e-141 504.2 288 82.3
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 4.9e-139 498.4 291 82.8
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 1.4e-138 496.9 316 79.1
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 1.8e-125 453.4 346 68.8
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 1.1e-117 427.6 360 57.8
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 1.8e-117 426.8 391 55.8
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 2.0e-116 423.3 260 80.8
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 2.9e-115 419.5 361 54.0
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 6.7e-112 408.3 340 55.6
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 1.8e-101 373.6 349 53.0
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 7.2e-98 361.7 235 79.6
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 7.8e-84 315.1 284 51.4
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 5.0e-83 312.4 226 66.8
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 2.4e-77 293.5 334 44.9
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 7.3e-66 255.4 369 37.9
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 8.1e-65 251.9 229 60.7
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 1.6e-60 237.7 351 39.9
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 8.6e-59 231.9 205 62.9
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 7.3e-58 228.8 268 51.1
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 3.6e-57 226.5 135 81.5
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 2.9e-46 190.3 99 93.9
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 1.9e-34 151.0 80 90.0
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 2.5e-34 150.6 82 89.0
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 6.4e-30 136.0 136 58.1
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 3.5e-28 130.2 81 75.3
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 3.2e-21 107.1 105 51.4
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 1.0e-19 102.1 65 69.2
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 1.1e-18 98.6 62 75.8
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 4.6e-12 76.6 64 60.9
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 2.6e-07 60.8 46 67.4
C09p57810 Brassica napus HOM05D006883 ORTHO05D008624 3.4e-07 60.5 253 23.7
Lsat_1_v5_gn_7_90061 Lactuca sativa HOM05D000834 ORTHO05D001119 7.7e-07 59.3 37 73.0
Sc25g0004770 Simmondsia chinensis HOM05D006883 ORTHO05D008624 7.7e-07 59.3 251 22.7
SEGI_20295 Sequoiadendron giganteum HOM05D006883 ORTHO05D008624 1.0e-06 58.9 255 24.7
A10p20920 Brassica napus HOM05D006883 ORTHO05D008624 1.3e-06 58.5 260 23.5
BraA10t44156Z Brassica rapa HOM05D006883 ORTHO05D008624 1.3e-06 58.5 260 23.5
Dinv43063 Davidia involucrata HOM05D000834 ORTHO05D183077 2.9e-06 57.4 32 84.4
Mapoly0040s0084 Marchantia polymorpha HOM05D005785 ORTHO05D007017 3.8e-06 57.0 158 27.8
Lalb_Chr15g0087031 Lupinus albus HOM05D006883 ORTHO05D008624 5.0e-06 56.6 252 24.2


User provided reference genes

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