Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0002440 Simmondsia chinensis HOM05D006020 ORTHO05D007665 1.3e-296 1022.3 514 100.0
EL10Ac7g17782 Beta vulgaris HOM05D006020 ORTHO05D007665 1.1e-157 560.8 518 56.8
Hund05517 Selenicereus undatus HOM05D006020 ORTHO05D007665 2.6e-156 556.2 516 55.8
Dinv04657 Davidia involucrata HOM05D006020 ORTHO05D007665 7.3e-151 538.1 523 53.9
Dinv19209 Davidia involucrata HOM05D006020 ORTHO05D007665 1.8e-149 533.5 526 53.4
AUR62031841 Chenopodium quinoa HOM05D006020 ORTHO05D007665 5.3e-149 531.9 525 54.1
GSVIVG01028621001 Vitis vinifera HOM05D006020 ORTHO05D007665 1.2e-148 530.8 520 54.2
AUR62008869 Chenopodium quinoa HOM05D006020 ORTHO05D007665 1.5e-143 513.8 533 52.0
Ciclev10019729m.g Citrus clementina HOM05D006020 ORTHO05D007665 3.5e-137 492.7 532 51.7
Atru.chr5.2019 Acer truncatum HOM05D006020 ORTHO05D007665 7.9e-137 491.5 522 51.0
Actinidia37585 Actinidia chinensis HOM05D006020 ORTHO05D007665 3.3e-135 486.1 520 50.0
Potri.002G241200 Populus trichocarpa HOM05D006020 ORTHO05D007665 1.1e-133 481.1 522 49.4
CiPaw.04G106000 Carya illinoinensis HOM05D006020 ORTHO05D007665 2.4e-133 479.9 525 49.0
Duzib133G0822 Durio zibethinus HOM05D006020 ORTHO05D007665 9.0e-133 478.0 520 49.4
TAR365G0939 Trochodendron aralioides HOM05D006020 ORTHO05D007665 1.5e-132 477.2 521 48.4
Manes.12G041000 Manihot esculenta HOM05D006020 ORTHO05D007665 2.6e-132 476.5 520 49.0
FvH4_2g19230 Fragaria vesca HOM05D006020 ORTHO05D007665 3.4e-132 476.1 494 52.6
Migut.N02265 Erythranthe guttata HOM05D006020 ORTHO05D007665 2.9e-131 473.0 521 49.1
FAN24G1617 Fragaria x ananassa HOM05D006020 ORTHO05D007665 3.8e-131 472.6 477 53.2
MSTRG.17550 Avicennia marina HOM05D006020 ORTHO05D007665 1.9e-130 470.3 516 48.8
Sabra02G0183800 Salix brachista HOM05D006020 ORTHO05D007665 3.2e-130 469.5 536 47.9
Thecc.01G227300 Theobroma cacao HOM05D006020 ORTHO05D007665 7.1e-130 468.4 520 49.0
MBI10_g05712_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 6.0e-129 465.3 447 53.2
Oeu042519.1 Olea europaea HOM05D006020 ORTHO05D007665 1.3e-128 464.2 455 52.5
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 1.8e-128 463.8 528 48.1
RcHm_v2.0_Chr6g0285011 Rosa chinensis HOM05D006020 ORTHO05D007665 3.0e-128 463.0 518 50.0
Gorai.007G153400 Gossypium raimondii HOM05D006020 ORTHO05D007665 4.3e-127 459.1 520 48.3
Lj1C84T12 Lonicera japonica HOM05D006020 ORTHO05D007665 1.6e-126 457.2 446 52.7
FAN27G2268 Fragaria x ananassa HOM05D006020 ORTHO05D007665 2.8e-126 456.4 496 51.0
Gohir.D11G143100 Gossypium hirsutum HOM05D006020 ORTHO05D007665 1.8e-125 453.8 529 47.8
Gohir.A11G136800 Gossypium hirsutum HOM05D006020 ORTHO05D007665 2.4e-125 453.4 520 48.1
CANSAT01G2399 Cannabis sativa HOM05D006020 ORTHO05D007665 3.1e-125 453.0 448 51.8
TWI75G0236 Tripterygium wilfordii HOM05D006020 ORTHO05D007665 5.8e-124 448.7 442 52.3
MD05G1177200 Malus domestica HOM05D006020 ORTHO05D007665 1.0e-123 448.0 520 49.6
Prupe.8G204200 Prunus persica HOM05D006020 ORTHO05D007665 1.7e-123 447.2 520 49.0
Manes.13G045000 Manihot esculenta HOM05D006020 ORTHO05D007665 6.5e-123 445.3 534 47.0
COL.COLO4_09005 Corchorus olitorius HOM05D006020 ORTHO05D007665 7.1e-122 441.8 575 45.9
vmacro02750 Vaccinium macrocarpon HOM05D006020 ORTHO05D007665 2.1e-121 440.3 561 45.3
Nitab4.5_0001872g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 6.1e-121 438.7 450 52.0
PGR044G0586 Punica granatum HOM05D006020 ORTHO05D007665 7.9e-121 438.3 477 50.1
Nn1g07811 Nelumbo nucifera HOM05D006020 ORTHO05D007665 1.0e-120 438.0 448 51.3
Solyc09g061420.3 Solanum lycopersicum HOM05D006020 ORTHO05D007665 2.3e-120 436.8 447 51.9
Nitab4.5_0000045g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 5.1e-120 435.6 449 51.4
FAN15G0009 Fragaria x ananassa HOM05D006020 ORTHO05D007665 3.3e-119 433.0 549 46.1
Lj1g0020866 Lotus japonicus HOM05D006020 ORTHO05D007665 2.2e-118 430.3 518 45.4
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 3.7e-118 429.5 453 50.8
C07p39450 Brassica napus HOM05D006020 ORTHO05D007665 1.4e-117 427.6 453 50.6
BolC7t44464H Brassica oleracea HOM05D006020 ORTHO05D007665 1.4e-117 427.6 453 50.6
Medtr7g058760 Medicago truncatula HOM05D006020 ORTHO05D007665 1.8e-117 427.2 459 49.2
Glyma.18G171900 Glycine max HOM05D006020 ORTHO05D007665 2.4e-117 426.8 481 47.6
ATR0736G004 Amborella trichopoda HOM05D006020 ORTHO05D007665 3.1e-117 426.4 530 43.8
BcaC06g30754 Brassica carinata HOM05D006020 ORTHO05D007665 4.1e-117 426.0 453 50.6
Ah.08g213940 Amaranthus hybridus HOM05D006020 ORTHO05D007665 5.3e-117 425.6 375 55.5
BraA06t26802Z Brassica rapa HOM05D006020 ORTHO05D007665 5.3e-117 425.6 463 49.7
Sp2g19230 Schrenkiella parvula HOM05D006020 ORTHO05D007665 6.9e-117 425.2 448 49.6
THA.LOC104818953 Tarenaya hassleriana HOM05D006020 ORTHO05D007665 1.2e-116 424.5 450 49.6
QL04p091507 Quercus lobata HOM05D006020 ORTHO05D007665 2.6e-116 423.3 597 41.9
Carub.0008s0856 Capsella rubella HOM05D006020 ORTHO05D007665 1.0e-115 421.4 453 49.2
Cc01_g17190 Coffea canephora HOM05D006020 ORTHO05D007665 1.7e-115 420.6 483 46.6
AT5G48830 Arabidopsis thaliana HOM05D006020 ORTHO05D007665 6.5e-115 418.7 482 46.9
TPR.G15290 Trifolium pratense HOM05D006020 ORTHO05D007665 6.5e-115 418.7 442 48.6
Thhalv10004024m.g Eutrema salsugineum HOM05D006020 ORTHO05D007665 8.5e-115 418.3 456 47.6
Aa31sc866G30 Aethionema arabicum HOM05D006020 ORTHO05D007665 1.1e-114 417.9 492 45.9
BcaB07g30043 Brassica carinata HOM05D006020 ORTHO05D007665 3.2e-114 416.4 452 48.5
AL8G22000 Arabidopsis lyrata HOM05D006020 ORTHO05D007665 4.2e-114 416.0 456 49.3
Nitab4.5_0002085g0020 Nicotiana tabacum HOM05D006020 ORTHO05D007665 5.5e-114 415.6 452 49.3
Nitab4.5_0004922g0030 Nicotiana tabacum HOM05D006020 ORTHO05D007665 5.5e-114 415.6 452 49.1
Aqoxy5G00068 Aquilegia oxysepala HOM05D006020 ORTHO05D007665 7.2e-114 415.2 514 44.9
Lalb_Chr19g0125561 Lupinus albus HOM05D006020 ORTHO05D007665 9.4e-114 414.8 452 48.7
Eucgr.K03608 Eucalyptus grandis HOM05D006020 ORTHO05D007665 4.6e-113 412.5 447 47.9
Phvul.008G124000 Phaseolus vulgaris HOM05D006020 ORTHO05D007665 6.1e-113 412.1 443 49.2
VMungo1383G1607 Vigna mungo HOM05D006020 ORTHO05D007665 6.1e-113 412.1 444 49.3
CARHR182910 Cardamine hirsuta HOM05D006020 ORTHO05D007665 1.0e-112 411.4 448 47.5
BolC2t11751H Brassica oleracea HOM05D006020 ORTHO05D007665 1.8e-112 410.6 454 48.2
ECA236G4144 Erigeron canadensis HOM05D006020 ORTHO05D007665 5.1e-112 409.1 443 49.0
BcaC03g17676 Brassica carinata HOM05D006020 ORTHO05D007665 3.3e-111 406.4 451 48.8
C02p56820 Brassica napus HOM05D006020 ORTHO05D007665 3.3e-111 406.4 451 48.8
Sed0023867 Sechium edule HOM05D006020 ORTHO05D007665 3.3e-111 406.4 523 44.9
HanXRQChr10g0287321 Helianthus annuus HOM05D006020 ORTHO05D007665 1.3e-110 404.4 442 49.8
arahy.Tifrunner.gnm1.ann1.PQ4NGV Arachis hypogaea HOM05D006020 ORTHO05D007665 3.7e-110 402.9 485 44.7
SalBow2G1017 Salvia bowleyana HOM05D006020 ORTHO05D007665 3.7e-110 402.9 528 45.6
BraA02t08755Z Brassica rapa HOM05D006020 ORTHO05D007665 8.2e-110 401.7 451 48.3
CAN.G771.64 Capsicum annuum HOM05D006020 ORTHO05D007665 1.1e-109 401.4 449 47.9
A02p37730 Brassica napus HOM05D006020 ORTHO05D007665 1.8e-109 400.6 451 48.1
CsaV3_7G025840 Cucumis sativus L. HOM05D006020 ORTHO05D007665 5.3e-109 399.1 519 44.5
Sopen09g024240 Solanum pennellii HOM05D006020 ORTHO05D007665 1.2e-108 397.9 535 43.6
Haze_24783 Corylus avellana HOM05D006020 ORTHO05D007665 2.2e-107 393.7 418 49.3
PSO674G0123 Papaver somniferum HOM05D006020 ORTHO05D007665 3.8e-107 392.9 528 43.6
MELO3C012759.2 Cucumis melo HOM05D006020 ORTHO05D007665 3.6e-105 386.3 483 46.0
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 7.9e-105 385.2 445 48.5
TAR362G0890 Trochodendron aralioides HOM05D006020 ORTHO05D007665 5.1e-104 382.5 353 56.4
ClCG09G009100 Citrullus lanatus HOM05D006020 ORTHO05D007665 4.8e-94 349.4 477 42.8
CDE06G1596 Ceratophyllum demersum HOM05D006020 ORTHO05D007665 1.8e-93 347.4 378 49.2
Glyma.08G355500 Glycine max HOM05D006020 ORTHO05D007665 1.6e-92 344.4 396 46.2
PSO170G4604 Papaver somniferum HOM05D006020 ORTHO05D007665 8.5e-91 338.6 486 41.8
HPP92_017884 Vanilla planifolia HOM05D006020 ORTHO05D007665 1.4e-88 331.3 444 41.7
Zm00001eb241910 Zea mays HOM05D006020 ORTHO05D007665 2.2e-83 313.9 514 40.1
MBI19_g27116_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 3.0e-80 303.5 304 52.6
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 2.8e-78 297.0 392 41.8
SEGI_37377 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 5.0e-75 286.2 506 35.6
Actinidia30087 Actinidia chinensis HOM05D006020 ORTHO05D007665 1.2e-71 275.0 209 65.6
SGA_v2.0_scaffold42G16144 Striga asiatica HOM05D006020 ORTHO05D007665 5.6e-66 256.1 317 44.8
Peaxi162Scf00107g00133 Petunia axillaris HOM05D006020 ORTHO05D007665 3.6e-65 253.4 446 36.5
arahy.Tifrunner.gnm1.ann1.3CP2KK Arachis hypogaea HOM05D001055 ORTHO05D000867 1.1e-53 215.3 189 59.3
MBI01_g07173_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.1e-52 211.1 304 40.8
Mapoly0173s0025 Marchantia polymorpha HOM05D006020 ORTHO05D007665 1.7e-51 208.0 457 32.6
HPP92_017879 Vanilla planifolia HOM05D006020 ORTHO05D007665 4.3e-50 203.4 294 37.8
AagrBONN_evm.TU.Sc2ySwM_344.2296 Anthoceros agrestis HOM05D006020 ORTHO05D007665 1.4e-48 198.4 457 33.5
MBI09_g17752_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 6.8e-48 196.1 303 39.6
SMO115G0313 Selaginella moellendorffii HOM05D006020 ORTHO05D007665 3.2e-45 187.2 428 32.5
FAN15G1634 Fragaria x ananassa HOM05D006020 ORTHO05D007665 6.0e-44 183.0 242 43.8
Pp3c24_4300 Physcomitrium patens HOM05D006020 ORTHO05D007665 6.6e-43 179.5 469 29.9
Psat3g144000 Pisum sativum HOM05D006020 ORTHO05D007665 7.6e-39 166.0 143 58.0
SEGI_14686 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 3.8e-38 163.7 231 41.1
arahy.Tifrunner.gnm1.ann1.PG1H4F Arachis hypogaea HOM05D006020 ORTHO05D007665 1.6e-36 158.3 271 35.1
Psat3g144040 Pisum sativum HOM05D006020 ORTHO05D007665 6.6e-35 152.9 181 43.6
unitig_85.g27279 Utricularia gibba HOM05D006020 ORTHO05D007665 2.6e-31 141.0 143 53.1
MBI16_g14987_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 3.4e-31 140.6 125 57.6
Cpa.g.sc8.167 Carica papaya HOM05D006020 ORTHO05D007665 3.9e-27 127.1 119 54.6
MBI12_g18650_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 9.0e-24 115.9 145 44.8
CBR_g31943 Chara braunii HOM05D006020 ORTHO05D007665 3.4e-15 87.4 140 35.7
PRCOL_00001532 Prasinoderma coloniale HOM05D006020 ORTHO05D007665 2.9e-14 84.3 270 27.8
Cpa.g.sc8.168 Carica papaya HOM05D006020 ORTHO05D007665 1.2e-12 79.0 102 41.2
TAR362G0264 Trochodendron aralioides HOM05D006020 ORTHO05D007665 4.6e-12 77.0 71 52.1
MBI12_g40856_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.3e-11 74.7 108 37.0
MBI16_g14988_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.8e-09 67.8 95 35.8
Os02g0515000 Oryza sativa ssp. japonica HOM05D006020 ORTHO05D007665 8.2e-09 66.2 150 28.7
MCO16G349 Micromonas commoda HOM05D006020 ORTHO05D007665 5.9e-07 60.1 67 41.8
BcaB07g30044 Brassica carinata HOM05D006020 ORTHO05D007665 1.7e-06 58.5 74 43.2


User provided reference genes

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