Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0002430 Simmondsia chinensis HOM05D005884 ORTHO05D007282 1.8e-97 359.4 195 100.0
Nitab4.5_0000866g0050 Nicotiana tabacum HOM05D005884 ORTHO05D007282 1.7e-36 156.8 155 60.0
Peaxi162Scf00107g01314 Petunia axillaris HOM05D005884 ORTHO05D007282 3.0e-36 156.0 144 63.2
ECA248G2691 Erigeron canadensis HOM05D005884 ORTHO05D007282 1.5e-35 153.7 132 67.4
Dinv04661 Davidia involucrata HOM05D005884 ORTHO05D007282 2.5e-35 152.9 159 62.3
Nitab4.5_0003790g0020 Nicotiana tabacum HOM05D005884 ORTHO05D007282 1.4e-33 147.1 155 58.1
HanXRQChr01g0014641 Helianthus annuus HOM05D005884 ORTHO05D007282 9.0e-33 144.4 158 57.6
CSS0032503 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 4.4e-32 142.1 134 64.2
CSS0024949 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 1.3e-31 140.6 134 63.4
Hma1.2p1_0351F.1_g132860 Hydrangea macrophylla HOM05D005884 ORTHO05D007282 1.7e-31 140.2 201 52.2
GSVIVG01028583001 Vitis vinifera HOM05D005884 ORTHO05D007282 2.2e-31 139.8 154 59.1
Actinidia23729 Actinidia chinensis HOM05D005884 ORTHO05D007282 4.9e-31 138.7 141 61.7
Dinv19212 Davidia involucrata HOM05D005884 ORTHO05D007282 6.4e-31 138.3 132 62.1
Solyc09g061440.4 Solanum lycopersicum HOM05D005884 ORTHO05D007282 8.4e-31 137.9 176 54.5
Thecc.01G227600 Theobroma cacao HOM05D005884 ORTHO05D007282 1.4e-30 137.1 164 57.3
Oeu015899.1 Olea europaea HOM05D005884 ORTHO05D007282 2.4e-30 136.3 185 49.2
Sopen09g024260 Solanum pennellii HOM05D005884 ORTHO05D007282 3.2e-30 136.0 134 64.9
vmacro14762 Vaccinium macrocarpon HOM05D005884 ORTHO05D007282 3.2e-30 136.0 167 51.5
PGR044G0377 Punica granatum HOM05D005884 ORTHO05D007282 7.1e-30 134.8 148 58.1
Phvul.010G014200 Phaseolus vulgaris HOM05D005884 ORTHO05D007282 9.3e-30 134.4 181 53.0
Hund18350 Selenicereus undatus HOM05D005884 ORTHO05D007282 9.3e-30 134.4 191 51.3
Lj3g0000124 Lotus japonicus HOM05D005884 ORTHO05D007282 1.2e-29 134.0 119 69.7
Manes.13G044700 Manihot esculenta HOM05D005884 ORTHO05D007282 1.6e-29 133.7 174 51.1
PGSC0003DMG400028009 Solanum tuberosum HOM05D005884 ORTHO05D007282 1.6e-29 133.7 142 61.3
CAN.G122.4 Capsicum annuum HOM05D005884 ORTHO05D007282 4.6e-29 132.1 102 73.5
Cc03_g12390 Coffea canephora HOM05D005884 ORTHO05D007282 4.6e-29 132.1 137 57.7
Eucgr.H00802 Eucalyptus grandis HOM05D005884 ORTHO05D007282 6.0e-29 131.7 159 56.0
Gohir.A07G156200 Gossypium hirsutum HOM05D005884 ORTHO05D007282 7.8e-29 131.3 138 55.8
CiPaw.03G150900 Carya illinoinensis HOM05D005884 ORTHO05D007282 1.0e-28 131.0 143 57.3
TAR362G0919 Trochodendron aralioides HOM05D005884 ORTHO05D007282 1.0e-28 131.0 169 54.4
TWI18G1166 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 1.3e-28 130.6 143 59.4
Rhsim01G0257200 Rhododendron simsii HOM05D005884 ORTHO05D007282 2.3e-28 129.8 159 52.8
TWI36G0226 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 2.3e-28 129.8 145 60.7
Potri.002G241000 Populus trichocarpa HOM05D005884 ORTHO05D007282 3.0e-28 129.4 140 58.6
Glyma.03G080200 Glycine max HOM05D005884 ORTHO05D007282 3.9e-28 129.0 185 52.4
MD05G1177500 Malus domestica HOM05D005884 ORTHO05D007282 5.1e-28 128.6 106 66.0
Lsat_1_v5_gn_5_179880 Lactuca sativa HOM05D005884 ORTHO05D007282 6.6e-28 128.3 148 55.4
Duzib133G0404 Durio zibethinus HOM05D005884 ORTHO05D007282 8.7e-28 127.9 137 58.4
Gorai.001G186100 Gossypium raimondii HOM05D005884 ORTHO05D007282 8.7e-28 127.9 175 49.7
QL02p021928 Quercus lobata HOM05D005884 ORTHO05D007282 8.7e-28 127.9 161 56.5
Ciclev10022209m.g Citrus clementina HOM05D005884 ORTHO05D007282 1.5e-27 127.1 128 62.5
Gohir.D07G162500 Gossypium hirsutum HOM05D005884 ORTHO05D007282 1.9e-27 126.7 175 49.7
Duzib138G0327 Durio zibethinus HOM05D005884 ORTHO05D007282 3.3e-27 125.9 171 52.6
Glyma.18G149300 Glycine max HOM05D005884 ORTHO05D007282 3.3e-27 125.9 155 54.8
EL10Ac7g17785 Beta vulgaris HOM05D005884 ORTHO05D007282 4.3e-27 125.6 153 57.5
CiPaw.04G106200 Carya illinoinensis HOM05D005884 ORTHO05D007282 4.3e-27 125.6 184 47.8
DCAR_018555 Daucus carota HOM05D005884 ORTHO05D007282 4.3e-27 125.6 136 55.9
Aqoxy2G03761 Aquilegia oxysepala HOM05D005884 ORTHO05D007282 5.6e-27 125.2 112 67.9
Ca_20129_v3 Cicer arietinum L. HOM05D005884 ORTHO05D007282 7.3e-27 124.8 127 63.8
Sabra02G0183600 Salix brachista HOM05D005884 ORTHO05D007282 2.1e-26 123.2 157 53.5
Migut.D00525 Erythranthe guttata HOM05D005884 ORTHO05D007282 2.8e-26 122.9 130 60.0
Cpa.g.sc8.170 Carica papaya HOM05D005884 ORTHO05D007282 4.8e-26 122.1 150 56.0
AUR62031836 Chenopodium quinoa HOM05D005884 ORTHO05D007282 4.8e-26 122.1 153 55.6
arahy.Tifrunner.gnm1.ann1.Q3DN0U Arachis hypogaea HOM05D005884 ORTHO05D007282 8.1e-26 121.3 139 58.3
Manes.12G041200 Manihot esculenta HOM05D005884 ORTHO05D007282 8.1e-26 121.3 110 61.8
Nn1g07794 Nelumbo nucifera HOM05D005884 ORTHO05D007282 8.1e-26 121.3 168 53.0
TAR633G1722 Trochodendron aralioides HOM05D005884 ORTHO05D007282 8.1e-26 121.3 170 53.5
Migut.N02263 Erythranthe guttata HOM05D005884 ORTHO05D007282 1.1e-25 120.9 113 61.9
FAN15G1595 Fragaria x ananassa HOM05D005884 ORTHO05D007282 1.1e-25 120.9 138 55.1
AUR62008873 Chenopodium quinoa HOM05D005884 ORTHO05D007282 1.8e-25 120.2 142 55.6
Lj2A1133T33 Lonicera japonica HOM05D005884 ORTHO05D007282 1.8e-25 120.2 138 58.0
Prupe.8G204400 Prunus persica HOM05D005884 ORTHO05D007282 2.4e-25 119.8 106 67.0
RcHm_v2.0_Chr6g0285061 Rosa chinensis HOM05D005884 ORTHO05D007282 2.4e-25 119.8 83 75.9
FAN27G0062 Fragaria x ananassa HOM05D005884 ORTHO05D007282 3.1e-25 119.4 138 54.3
COL.COLO4_10043 Corchorus olitorius HOM05D003123 ORTHO05D007282 4.0e-25 119.0 128 59.4
Lalb_Chr07g0194041 Lupinus albus HOM05D005884 ORTHO05D007282 4.0e-25 119.0 141 56.0
MSTRG.18383 Avicennia marina HOM05D005884 ORTHO05D007282 5.3e-25 118.6 191 48.7
MBI07_g23671_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 6.9e-25 118.2 131 55.7
FvH4_2g19250 Fragaria vesca HOM05D005884 ORTHO05D007282 9.0e-25 117.9 138 54.3
FAN24G3425 Fragaria x ananassa HOM05D005884 ORTHO05D007282 9.0e-25 117.9 138 54.3
arahy.Tifrunner.gnm1.ann1.C60K2U Arachis hypogaea HOM05D005884 ORTHO05D007282 1.2e-24 117.5 139 58.3
PSO017G2163 Papaver somniferum HOM05D005884 ORTHO05D007282 1.2e-24 117.5 112 63.4
PSO063G4085 Papaver somniferum HOM05D005884 ORTHO05D007282 1.2e-24 117.5 116 62.1
SalBow4G1286 Salvia bowleyana HOM05D005884 ORTHO05D007282 1.5e-24 117.1 166 50.6
CDE02G3372 Ceratophyllum demersum HOM05D005884 ORTHO05D007282 2.0e-24 116.7 124 58.9
Cfa002560 Carpinus fangiana HOM05D005884 ORTHO05D007282 3.4e-24 115.9 136 58.1
Haze_24787 Corylus avellana HOM05D005884 ORTHO05D007282 3.4e-24 115.9 136 58.1
Psat7g243200 Pisum sativum HOM05D005884 ORTHO05D007282 3.4e-24 115.9 178 50.0
Medtr4g017880 Medicago truncatula HOM05D005884 ORTHO05D007282 4.5e-24 115.5 157 54.8
Ah.08g213990 Amaranthus hybridus HOM05D005884 ORTHO05D007282 7.6e-24 114.8 191 46.1
ATR0736G055 Amborella trichopoda HOM05D005884 ORTHO05D007282 1.3e-23 114.0 129 56.6
FAN15G1921 Fragaria x ananassa HOM05D005884 ORTHO05D007282 2.2e-23 113.2 201 44.8
Sp7g10660 Schrenkiella parvula HOM05D005884 ORTHO05D007282 3.8e-23 112.5 129 55.0
SGA_v2.0_scaffold8G04650 Striga asiatica HOM05D005884 ORTHO05D007282 8.4e-23 111.3 151 50.3
ClCG09G009110 Citrullus lanatus HOM05D005884 ORTHO05D007282 1.9e-22 110.2 172 48.3
Zm00001eb426500 Zea mays HOM05D005884 ORTHO05D007282 3.2e-22 109.4 155 49.7
Gorai.009G365800 Gossypium raimondii HOM05D005884 ORTHO05D007282 4.2e-22 109.0 128 52.3
BcaB03g16138 Brassica carinata HOM05D005884 ORTHO05D007282 5.4e-22 108.6 156 47.4
Carub.0007s2947 Capsella rubella HOM05D005884 ORTHO05D007282 7.1e-22 108.2 146 52.1
CsaV3_7G025830 Cucumis sativus L. HOM05D005884 ORTHO05D007282 7.1e-22 108.2 177 44.6
Os04g0513000 Oryza sativa ssp. japonica HOM05D005884 ORTHO05D007282 7.1e-22 108.2 111 57.7
A04p08870 Brassica napus HOM05D005884 ORTHO05D007282 1.6e-21 107.1 160 47.5
Gohir.A09G200610 Gossypium hirsutum HOM05D005884 ORTHO05D007282 1.6e-21 107.1 74 79.7
BraA04t16580Z Brassica rapa HOM05D005884 ORTHO05D007282 4.6e-21 105.5 162 48.8
BolC4t25837H Brassica oleracea HOM05D005884 ORTHO05D007282 6.0e-21 105.1 160 48.8
Thhalv10026263m.g Eutrema salsugineum HOM05D005884 ORTHO05D007282 1.0e-20 104.4 152 48.0
Sed0001531 Sechium edule HOM05D005884 ORTHO05D007282 1.0e-20 104.4 125 53.6
MELO3C012764.2 Cucumis melo HOM05D005884 ORTHO05D007282 1.3e-20 104.0 178 44.9
BcaC02g09439 Brassica carinata HOM05D005884 ORTHO05D007282 3.0e-20 102.8 160 48.1
HPP92_022492 Vanilla planifolia HOM05D005884 ORTHO05D007282 5.1e-20 102.1 166 46.4
MBI10_g44186_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 8.7e-20 101.3 140 50.7
MD10G1165900 Malus domestica HOM05D005884 ORTHO05D007282 1.5e-19 100.5 72 73.6
VMungo0331G1358 Vigna mungo HOM05D005884 ORTHO05D007282 1.9e-19 100.1 98 62.2
SEGI_25444 Sequoiadendron giganteum HOM05D005884 ORTHO05D007282 2.5e-19 99.8 159 44.0
TPR.G8219 Trifolium pratense HOM05D005884 ORTHO05D007282 2.5e-19 99.8 166 45.8
C04p42740 Brassica napus HOM05D005884 ORTHO05D007282 3.3e-19 99.4 104 56.7
MSTRG.17548 Avicennia marina HOM05D005884 ORTHO05D007282 5.6e-19 98.6 122 53.3
unitig_22.g6325 Utricularia gibba HOM05D005884 ORTHO05D007282 5.6e-19 98.6 137 49.6
TAR194G0001 Trochodendron aralioides HOM05D005884 ORTHO05D004773 1.4e-17 94.0 88 63.6
Mapoly0028s0026 Marchantia polymorpha HOM05D005884 ORTHO05D007282 6.9e-17 91.7 142 44.4
MBI06_g14323_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 3.4e-16 89.4 82 61.0
THA.LOC104804605 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 5.8e-16 88.6 77 62.3
THA.LOC104808781 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 1.7e-15 87.0 147 41.5
CANSAT01G0442 Cannabis sativa HOM05D005884 ORTHO05D007282 4.9e-15 85.5 156 42.9
AL9U10790 Arabidopsis lyrata HOM05D005884 ORTHO05D007282 7.1e-14 81.6 133 42.9
SalBow2G0198 Salvia bowleyana HOM05D005884 ORTHO05D007282 9.3e-14 81.3 82 57.3
AT4G13200 Arabidopsis thaliana HOM05D005884 ORTHO05D007282 1.6e-13 80.5 141 44.0
CARHR218670 Cardamine hirsuta HOM05D005884 ORTHO05D007282 1.6e-13 80.5 126 46.0
Aa31LG9G4610 Aethionema arabicum HOM05D005884 ORTHO05D007282 1.0e-12 77.8 144 40.3
AagrBONN_evm.TU.Sc2ySwM_228.3174 Anthoceros agrestis HOM05D005884 ORTHO05D007282 2.3e-12 76.6 54 68.5
Sed0008993 Sechium edule HOM05D005884 ORTHO05D007282 1.1e-11 74.3 108 43.5
Atru.chr3.3178 Acer truncatum HOM05D005884 ORTHO05D007282 1.3e-10 70.9 134 39.6
Gohir.A03G143925 Gossypium hirsutum HOM05D005884 ORTHO05D007282 3.7e-10 69.3 99 47.5
Gorai.001G128300 Gossypium raimondii HOM05D005884 ORTHO05D007282 3.7e-10 69.3 99 47.5
Gorai.001G116800 Gossypium raimondii HOM05D005884 ORTHO05D007282 4.8e-10 68.9 97 48.5
Gorai.002G226800 Gossypium raimondii HOM05D005884 ORTHO05D007282 4.8e-10 68.9 97 48.5
Pp3c5_25810 Physcomitrium patens HOM05D005884 ORTHO05D007282 1.4e-09 67.4 126 38.9
MCO02G464 Micromonas commoda HOM05D005884 ORTHO05D007282 1.5e-08 63.9 67 50.7


User provided reference genes

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