Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0002340 Simmondsia chinensis HOM05D007485 ORTHO05D009437 5.8e-78 294.3 162 100.0
EL10Ac7g17803 Beta vulgaris HOM05D007485 ORTHO05D009437 8.8e-42 174.1 145 64.8
AUR62008887 Chenopodium quinoa HOM05D007485 ORTHO05D009437 6.9e-39 164.5 158 60.8
AUR62031821 Chenopodium quinoa HOM05D007485 ORTHO05D009437 5.0e-37 158.3 164 56.1
TWI59G0176 Tripterygium wilfordii HOM05D007485 ORTHO05D009437 2.1e-35 152.9 176 54.5
PGR083G2217 Punica granatum HOM05D007485 ORTHO05D009437 4.7e-35 151.8 154 56.5
Thecc.01G230100 Theobroma cacao HOM05D007485 ORTHO05D009437 1.8e-34 149.8 174 51.7
CiPaw.03G152400 Carya illinoinensis HOM05D007485 ORTHO05D009437 3.9e-34 148.7 147 57.1
Migut.D00513 Erythranthe guttata HOM05D007485 ORTHO05D009437 3.9e-34 148.7 169 52.7
Gohir.A07G201700 Gossypium hirsutum HOM05D007485 ORTHO05D009437 6.7e-34 147.9 152 54.6
GSVIVG01028546001 Vitis vinifera HOM05D007485 ORTHO05D009437 1.5e-33 146.7 150 54.0
Gohir.D07G208000 Gossypium hirsutum HOM05D007485 ORTHO05D009437 2.0e-33 146.4 152 53.9
Manes.12G043200 Manihot esculenta HOM05D007485 ORTHO05D009437 2.6e-33 146.0 156 51.9
MSTRG.18375 Avicennia marina HOM05D007485 ORTHO05D009437 4.4e-33 145.2 153 54.2
Sopen06g002830 Solanum pennellii HOM05D007485 ORTHO05D009437 1.3e-32 143.7 162 50.0
Haze_24766 Corylus avellana HOM05D007485 ORTHO05D009437 3.7e-32 142.1 177 51.4
Peaxi162Scf00499g00019 Petunia axillaris HOM05D007485 ORTHO05D009437 3.7e-32 142.1 166 50.0
Cfa002536 Carpinus fangiana HOM05D001836 ORTHO05D001519 4.8e-32 141.7 176 51.7
Cc01_g17350 Coffea canephora HOM05D007485 ORTHO05D009437 6.3e-32 141.4 157 49.0
Actinidia37576 Actinidia chinensis HOM05D007485 ORTHO05D009437 1.4e-31 140.2 156 51.9
Duzib133G1001 Durio zibethinus HOM05D007485 ORTHO05D009437 1.4e-31 140.2 174 51.1
Solyc06g007990.4 Solanum lycopersicum HOM05D007485 ORTHO05D009437 1.8e-31 139.8 162 48.8
FvH4_2g19580 Fragaria vesca HOM05D007485 ORTHO05D009437 2.4e-31 139.4 165 50.9
Nn1g03123 Nelumbo nucifera HOM05D007485 ORTHO05D009437 2.4e-31 139.4 156 54.5
CARHR126310 Cardamine hirsuta HOM05D007485 ORTHO05D009437 3.1e-31 139.0 155 49.7
FAN24G1628 Fragaria x ananassa HOM05D007485 ORTHO05D009437 4.1e-31 138.7 165 50.3
AT4G13220 Arabidopsis thaliana HOM05D007485 ORTHO05D009437 5.3e-31 138.3 155 49.7
Thhalv10026377m.g Eutrema salsugineum HOM05D007485 ORTHO05D009437 5.3e-31 138.3 155 50.3
MD10G1169600 Malus domestica HOM05D007485 ORTHO05D009437 9.1e-31 137.5 166 49.4
AL9U10750 Arabidopsis lyrata HOM05D007485 ORTHO05D009437 1.2e-30 137.1 156 49.4
Aa31LG9G4570 Aethionema arabicum HOM05D007485 ORTHO05D009437 1.6e-30 136.7 176 48.9
Carub.0007s2945 Capsella rubella HOM05D007485 ORTHO05D009437 2.0e-30 136.3 155 49.0
FAN27G2610 Fragaria x ananassa HOM05D007485 ORTHO05D009437 2.0e-30 136.3 165 49.7
Prupe.8G207500 Prunus persica HOM05D007485 ORTHO05D009437 2.6e-30 136.0 159 51.6
RcHm_v2.0_Chr6g0285341 Rosa chinensis HOM05D007485 ORTHO05D009437 2.6e-30 136.0 149 49.7
Lsat_1_v5_gn_9_12821 Lactuca sativa HOM05D007485 ORTHO05D009437 5.9e-30 134.8 154 53.2
Rhsim13G0042600 Rhododendron simsii HOM05D007485 ORTHO05D009437 5.9e-30 134.8 147 51.0
Sp7g10710 Schrenkiella parvula HOM05D007485 ORTHO05D009437 5.9e-30 134.8 155 51.0
Gorai.001G234600 Gossypium raimondii HOM05D007485 ORTHO05D009437 7.7e-30 134.4 167 48.5
CARHR218700 Cardamine hirsuta HOM05D007485 ORTHO05D009437 1.0e-29 134.0 157 51.0
MD05G1180900 Malus domestica HOM05D007485 ORTHO05D009437 1.0e-29 134.0 178 44.9
SalBow6G3754 Salvia bowleyana HOM05D007485 ORTHO05D009437 1.0e-29 134.0 147 49.7
Phvul.008G122300 Phaseolus vulgaris HOM05D007485 ORTHO05D009437 1.3e-29 133.7 112 61.6
THA.LOC104808772 Tarenaya hassleriana HOM05D007485 ORTHO05D009437 1.3e-29 133.7 155 48.4
HPP92_025808 Vanilla planifolia HOM05D007485 ORTHO05D009437 2.9e-29 132.5 156 50.0
Ciclev10022604m.g Citrus clementina HOM05D007485 ORTHO05D009437 3.8e-29 132.1 167 47.9
Potri.002G251800 Populus trichocarpa HOM05D007485 ORTHO05D009437 5.0e-29 131.7 162 51.2
CSS0034782 Camellia sinensis var. sinensis HOM05D007485 ORTHO05D009437 1.1e-28 130.6 151 51.0
VMungo1383G3371 Vigna mungo HOM05D007485 ORTHO05D009437 1.1e-28 130.6 117 58.1
BraA08t35252Z Brassica rapa HOM05D007485 ORTHO05D009437 1.5e-28 130.2 147 50.3
Atru.chr5.1880 Acer truncatum HOM05D007485 ORTHO05D009437 1.9e-28 129.8 187 46.5
FAN15G2643 Fragaria x ananassa HOM05D007485 ORTHO05D009437 2.5e-28 129.4 164 48.8
Lj1g0002217 Lotus japonicus HOM05D007485 ORTHO05D009437 3.2e-28 129.0 152 50.0
BcaB03g13243 Brassica carinata HOM05D007485 ORTHO05D009437 5.5e-28 128.3 161 50.3
CANSAT01G1289 Cannabis sativa HOM05D007485 ORTHO05D009437 5.5e-28 128.3 165 44.8
arahy.Tifrunner.gnm1.ann1.9XF3L6 Arachis hypogaea HOM05D007485 ORTHO05D009437 9.4e-28 127.5 121 59.5
BcaC07g38678 Brassica carinata HOM05D007485 ORTHO05D009437 1.2e-27 127.1 163 46.0
BolC8t49113H Brassica oleracea HOM05D007485 ORTHO05D009437 1.2e-27 127.1 163 46.0
CsaV3_3G028690 Cucumis sativus L. HOM05D007485 ORTHO05D009437 1.2e-27 127.1 114 56.1
Glyma.18G175800 Glycine max HOM05D007485 ORTHO05D009437 1.2e-27 127.1 173 45.7
Lalb_Chr19g0125461 Lupinus albus HOM05D007485 ORTHO05D009437 1.2e-27 127.1 156 46.2
SGA_v2.0_scaffold1G00709 Striga asiatica HOM05D007485 ORTHO05D009437 1.2e-27 127.1 151 51.0
A08p33350 Brassica napus HOM05D007485 ORTHO05D009437 2.7e-27 125.9 170 45.9
CAN.G322.118 Capsicum annuum HOM05D007485 ORTHO05D009437 2.7e-27 125.9 158 46.2
Eucgr.C02436 Eucalyptus grandis HOM05D007485 ORTHO05D009437 4.7e-27 125.2 133 54.9
PGSC0003DMG400014703 Solanum tuberosum HOM05D007485 ORTHO05D009437 4.7e-27 125.2 100 63.0
C08p14780 Brassica napus HOM05D007485 ORTHO05D009437 8.0e-27 124.4 169 45.0
HanXRQChr15g0468381 Helianthus annuus HOM05D007485 ORTHO05D009437 1.0e-26 124.0 147 49.0
Glyma.08G357300 Glycine max HOM05D007485 ORTHO05D009437 1.8e-26 123.2 178 44.4
vmacro02738 Vaccinium macrocarpon HOM05D007485 ORTHO05D009437 2.3e-26 122.9 180 42.8
MBI10_g09190_MAGBIO Magnolia biondii HOM05D007485 ORTHO05D009437 3.0e-26 122.5 157 47.8
Aqoxy2G03844 Aquilegia oxysepala HOM05D007485 ORTHO05D009437 5.2e-26 121.7 118 57.6
PSO017G5507 Papaver somniferum HOM05D007485 ORTHO05D009437 6.7e-26 121.3 133 51.9
ECA247G1773 Erigeron canadensis HOM05D007485 ORTHO05D009437 8.8e-26 120.9 132 52.3
Medtr7g059255 Medicago truncatula HOM05D007485 ORTHO05D009437 1.1e-25 120.6 151 47.7
PSO063G7151 Papaver somniferum HOM05D007485 ORTHO05D009437 4.4e-25 118.6 136 52.9
Os12g0276100 Oryza sativa ssp. japonica HOM05D007485 ORTHO05D009437 7.5e-25 117.9 110 50.9
MELO3C012792.2 Cucumis melo HOM05D007485 ORTHO05D009437 1.7e-24 116.7 175 44.6
Nitab4.5_0001740g0030 Nicotiana tabacum HOM05D007485 ORTHO05D009437 2.8e-24 115.9 157 49.0
arahy.Tifrunner.gnm1.ann1.W4TMFE Arachis hypogaea HOM05D007485 ORTHO05D009437 8.2e-24 114.4 185 42.7
CDE12G0678 Ceratophyllum demersum HOM05D007485 ORTHO05D009437 1.8e-23 113.2 129 48.8
TPR.G9157 Trifolium pratense HOM05D007485 ORTHO05D009437 7.0e-23 111.3 103 57.3
QL09p044412 Quercus lobata HOM05D007485 ORTHO05D009437 1.7e-21 106.7 133 54.9
Sed0027911 Sechium edule HOM05D007485 ORTHO05D009437 8.5e-21 104.4 201 37.8
Zm00001eb102490 Zea mays HOM05D007485 ORTHO05D009437 3.2e-20 102.4 114 49.1
unitig_0.g180 Utricularia gibba HOM05D007485 ORTHO05D009437 5.5e-20 101.7 144 46.5
Zm00001eb317800 Zea mays HOM05D007485 ORTHO05D009437 8.0e-19 97.8 109 47.7
COL.COLO4_36853 Corchorus olitorius HOM05D007485 ORTHO05D009437 8.8e-18 94.4 134 50.0
Hund18369 Selenicereus undatus HOM05D007485 ORTHO05D009437 1.3e-16 90.5 142 47.2
QL09p045086 Quercus lobata HOM05D007485 ORTHO05D009437 3.1e-15 85.9 56 80.4
Pp3c25_600 Physcomitrium patens HOM05D007485 ORTHO05D009437 1.0e-13 80.9 141 36.2
Psat0s3317g0040 Pisum sativum HOM05D007485 ORTHO05D009437 8.5e-13 77.8 68 61.8
ATR0088G060 Amborella trichopoda HOM05D007485 ORTHO05D009437 8.0e-11 71.2 56 64.3
HanXRQChr12g0377041 Helianthus annuus HOM05D007485 ORTHO05D009437 1.5e-09 67.0 55 63.6
Cre16.g687200 Chlamydomonas reinhardtii HOM05D007485 ORTHO05D009437 1.6e-06 57.0 113 34.5
Mapoly0101s0026 Marchantia polymorpha HOM05D007485 ORTHO05D009437 5.9e-06 55.1 54 51.9


User provided reference genes

Program Settings