Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0002290 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.8e-136 489.2 241 100.0
Gohir.A09G101420 Gossypium hirsutum HOM05D000963 ORTHO05D005131 3.1e-51 206.1 232 55.2
SHI36398 Sapria himalayana HOM05D000963 ORTHO05D005131 3.1e-51 206.1 230 54.3
DCAR_001146 Daucus carota HOM05D000963 ORTHO05D005131 2.6e-50 203.0 150 75.3
DCAR_032037 Daucus carota HOM05D000963 ORTHO05D005131 2.6e-50 203.0 150 75.3
Gohir.D03G074448 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.6e-50 203.0 150 75.3
CSS0000719 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D005131 4.5e-50 202.2 146 74.0
DCAR_018748 Daucus carota HOM05D003334 ORTHO05D004076 4.5e-50 202.2 146 76.0
Sc03g0007080 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.3e-49 200.7 177 65.0
Gohir.A12G092444 Gossypium hirsutum HOM05D000963 ORTHO05D005131 3.5e-47 192.6 151 70.9
unitig_91.g26518 Utricularia gibba HOM05D001325 ORTHO05D001540 1.8e-46 190.3 109 89.0
unitig_87.g28036 Utricularia gibba HOM05D000963 ORTHO05D005131 2.3e-46 189.9 108 89.8
unitig_91.g26528 Utricularia gibba HOM05D000963 ORTHO05D005131 2.3e-46 189.9 108 89.8
Sc05g0004130 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.1e-45 187.6 109 88.1
Gorai.012G100900 Gossypium raimondii HOM05D000963 ORTHO05D005131 7.4e-45 184.9 132 74.2
Hund25913 Selenicereus undatus HOM05D000963 ORTHO05D005131 1.3e-44 184.1 107 86.0
Sopen11g020190 Solanum pennellii HOM05D000963 ORTHO05D005131 3.7e-44 182.6 178 60.1
Sopen02g009100 Solanum pennellii HOM05D000963 ORTHO05D005131 1.8e-43 180.3 143 69.2
RhsimPtG0005500 Rhododendron simsii HOM05D000963 ORTHO05D005131 2.4e-43 179.9 107 86.0
Migut.D01379 Erythranthe guttata HOM05D000963 ORTHO05D005131 5.3e-43 178.7 159 64.8
EL10As10g23961 Beta vulgaris HOM05D000963 ORTHO05D005131 9.0e-43 177.9 249 48.2
Gohir.D02G117532 Gossypium hirsutum HOM05D000963 ORTHO05D005131 9.0e-43 177.9 134 71.6
PGSC0003DMG400020295 Solanum tuberosum HOM05D000963 ORTHO05D005131 3.4e-42 176.0 107 83.2
Gohir.D04G090233 Gossypium hirsutum HOM05D000963 ORTHO05D005131 7.6e-42 174.9 131 73.3
SHI47131 Sapria himalayana HOM05D000963 ORTHO05D005131 3.2e-40 169.5 149 62.4
vmacro22396 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 3.2e-40 169.5 103 86.4
PGSC0003DMG400036067 Solanum tuberosum HOM05D000963 ORTHO05D001540 1.2e-39 167.5 156 65.4
Gohir.A13G086560 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.7e-39 166.4 169 60.4
Oeu039801.1 Olea europaea HOM05D000963 ORTHO05D005131 7.9e-39 164.9 150 63.3
TAR365G0238 Trochodendron aralioides HOM05D001325 ORTHO05D001540 1.0e-38 164.5 109 78.9
SalBow6G4874 Salvia bowleyana HOM05D000963 ORTHO05D005131 1.3e-38 164.1 124 74.2
EL10As6g23662 Beta vulgaris HOM05D001325 ORTHO05D001540 1.8e-38 163.7 212 51.4
Cpa.g.sc389.2 Carica papaya HOM05D000963 ORTHO05D005131 1.8e-38 163.7 107 75.7
SHI42531 Sapria himalayana HOM05D000963 ORTHO05D005131 1.1e-37 161.0 150 60.0
SGA_v2.0_scaffold893G53701 Striga asiatica HOM05D000963 ORTHO05D005131 3.3e-37 159.5 95 87.4
unitig_87.g27920 Utricularia gibba HOM05D000963 ORTHO05D001540 4.3e-37 159.1 151 62.3
ECA074G0007 Erigeron canadensis HOM05D000963 ORTHO05D004715 5.7e-37 158.7 150 62.7
ECA074G0008 Erigeron canadensis HOM05D000963 ORTHO05D004715 5.7e-37 158.7 150 62.7
ECA169G0003 Erigeron canadensis HOM05D000963 ORTHO05D005131 5.7e-37 158.7 150 62.7
PGSC0003DMG400018892 Solanum tuberosum HOM05D000963 ORTHO05D005131 5.7e-37 158.7 150 62.7
vmacro22416 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 2.8e-36 156.4 94 88.3
vmacro22421 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 2.8e-36 156.4 94 88.3
Gohir.A12G053150 Gossypium hirsutum HOM05D000963 ORTHO05D005131 3.7e-36 156.0 169 58.0
Nitab4.5_0000017g0110 Nicotiana tabacum HOM05D000963 ORTHO05D005131 6.3e-36 155.2 91 83.5
PGSC0003DMG400046976 Solanum tuberosum HOM05D000963 ORTHO05D005131 8.2e-36 154.8 149 57.7
unitig_8.g4106 Utricularia gibba HOM05D000963 ORTHO05D005131 1.1e-35 154.5 150 62.0
DCAR_001525 Daucus carota HOM05D000963 ORTHO05D005131 6.9e-35 151.8 88 88.6
CAN.G1185.10 Capsicum annuum HOM05D000963 ORTHO05D004715 3.4e-34 149.4 108 75.0
arahy.Tifrunner.gnm1.ann1.ZFFY2U Arachis hypogaea HOM05D000963 ORTHO05D005131 7.7e-34 148.3 104 76.9
Nitab4.5_0004841g0030 Nicotiana tabacum HOM05D000963 ORTHO05D005131 5.0e-33 145.6 97 78.4
TAR633G0621 Trochodendron aralioides HOM05D000963 ORTHO05D005131 3.2e-32 142.9 82 86.6
vmacro09302 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 2.1e-31 140.2 97 75.3
Gohir.D10G125850 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.7e-31 139.8 113 68.1
LjContig00319g0011411 Lotus japonicus HOM05D000963 ORTHO05D005131 3.0e-30 136.3 171 51.5
Gohir.A01G056250 Gossypium hirsutum HOM05D000963 ORTHO05D005131 6.7e-30 135.2 107 69.2
C06p23110 Brassica napus HOM05D000963 ORTHO05D005131 3.3e-29 132.9 180 47.8
C09p24700 Brassica napus HOM05D000963 ORTHO05D005131 3.3e-29 132.9 180 47.8
C09p39380 Brassica napus HOM05D000963 ORTHO05D005131 3.3e-29 132.9 180 47.8
BraSC143t45666Z Brassica rapa HOM05D000963 ORTHO05D005131 3.3e-29 132.9 180 47.8
BraSC25t45900Z Brassica rapa HOM05D000963 ORTHO05D005131 3.3e-29 132.9 180 47.8
BraSC59t46558Z Brassica rapa HOM05D000963 ORTHO05D005131 3.3e-29 132.9 180 47.8
BcaNung01517 Brassica carinata HOM05D000963 ORTHO05D005131 4.4e-29 132.5 152 57.9
SGA_v2.0_scaffold126G33874 Striga asiatica HOM05D000963 ORTHO05D005131 4.4e-29 132.5 113 64.6
Sc05g0004060 Simmondsia chinensis HOM05D000963 ORTHO05D005131 2.8e-28 129.8 85 80.0
PGSC0003DMG400001215 Solanum tuberosum HOM05D000963 ORTHO05D005131 6.3e-28 128.6 147 53.7
Dinv39831 Davidia involucrata HOM05D000963 ORTHO05D004715 4.1e-27 125.9 73 89.0
Sc25g0002000 Simmondsia chinensis HOM05D000963 ORTHO05D005131 9.1e-27 124.8 73 87.7
CDE02G2642 Ceratophyllum demersum HOM05D000963 ORTHO05D005131 2.0e-26 123.6 127 58.3
MBI13_g30267_MAGBIO Magnolia biondii HOM05D000571 ORTHO05D000435 2.0e-26 123.6 91 72.5
Solyc01g017050.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 4.5e-26 122.5 71 85.9
Migut.D01399 Erythranthe guttata HOM05D000963 ORTHO05D011117 1.3e-25 120.9 142 57.0
Gohir.D11G280866 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.7e-25 120.6 86 66.3
Gorai.007G303200 Gossypium raimondii HOM05D000963 ORTHO05D005131 2.2e-25 120.2 86 66.3
vmacro09305 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 3.2e-24 116.3 113 61.1
Cpa.g.sc86.15 Carica papaya HOM05D000963 ORTHO05D005131 9.4e-24 114.8 89 66.3
Sc14g0005060 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.2e-23 114.4 82 75.6
VMungo0464G1437 Vigna mungo HOM05D000963 ORTHO05D005131 1.0e-22 111.3 124 54.8
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 8.8e-22 108.2 89 67.4
Lsat_1_v5_gn_4_145420 Lactuca sativa HOM05D000963 ORTHO05D005131 2.0e-21 107.1 79 72.2
Sopen11g020200 Solanum pennellii HOM05D000004 ORTHO05D000002 5.7e-21 105.5 64 79.7
Nitab4.5_0004533g0040 Nicotiana tabacum HOM05D014900 ORTHO05D005131 7.4e-21 105.1 88 64.8
Sopen10g016560 Solanum pennellii HOM05D000963 ORTHO05D005131 7.4e-21 105.1 67 80.6
Gohir.D09G105350 Gossypium hirsutum HOM05D000963 ORTHO05D005131 9.7e-21 104.8 68 75.0
Gorai.005G078000 Gossypium raimondii HOM05D000963 ORTHO05D005131 1.3e-20 104.4 88 65.9
Aqoxy4G01626 Aquilegia oxysepala HOM05D003517 ORTHO05D005131 1.7e-20 104.0 101 62.4
Oeu015125.1 Olea europaea HOM05D000963 ORTHO05D010201 2.2e-20 103.6 63 82.5
SHI37614 Sapria himalayana HOM05D000963 ORTHO05D005131 3.7e-20 102.8 69 78.3
Lsat_1_v5_gn_2_20580 Lactuca sativa HOM05D014900 ORTHO05D020265 2.0e-18 97.1 59 81.4
Nitab4.5_0006211g0050 Nicotiana tabacum HOM05D000963 ORTHO05D005131 3.5e-18 96.3 54 85.2
Migut.D01497 Erythranthe guttata HOM05D000963 ORTHO05D005131 7.7e-18 95.1 147 48.3
EL10Ac7g17438 Beta vulgaris HOM05D000963 ORTHO05D005131 5.0e-17 92.4 56 80.4
Dinv44812 Davidia involucrata HOM05D000086 ORTHO05D000431 8.5e-17 91.7 54 81.5
Oeu012784.1 Olea europaea HOM05D000963 ORTHO05D005131 8.5e-17 91.7 66 72.7
Manes.02G203601 Manihot esculenta HOM05D000963 ORTHO05D005131 9.4e-16 88.2 87 56.3
Nitab4.5_0000729g0060 Nicotiana tabacum HOM05D000963 ORTHO05D005131 1.2e-15 87.8 57 70.2
MELO3C027666.2 Cucumis melo HOM05D028556 ORTHO05D011791 1.6e-15 87.4 53 77.4
Gohir.1Z049680 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.6e-15 87.4 79 62.0
Gohir.D01G121360 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.6e-15 87.4 83 55.4
Gorai.002G152100 Gossypium raimondii HOM05D000963 ORTHO05D005131 2.1e-15 87.0 190 37.9
Glyma.05G084600 Glycine max HOM05D000963 ORTHO05D005131 4.7e-15 85.9 57 71.9
VMungo1024G0002 Vigna mungo HOM05D000963 ORTHO05D005131 2.3e-14 83.6 71 63.4
Nitab4.5_0008665g0050 Nicotiana tabacum HOM05D000963 ORTHO05D005131 4.0e-14 82.8 49 79.6
Ca_03776_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 5.7e-13 79.0 96 49.0
Ca_03777_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 5.7e-13 79.0 96 49.0
MELO3C028149.2 Cucumis melo HOM05D028556 ORTHO05D011791 2.8e-12 76.6 48 75.0
SEGI_13287 Sequoiadendron giganteum HOM05D000963 ORTHO05D005131 2.8e-12 76.6 56 69.6
arahy.Tifrunner.gnm1.ann1.J9XL5M Arachis hypogaea HOM05D000963 ORTHO05D005131 1.8e-11 73.9 43 86.0
arahy.Tifrunner.gnm1.ann1.MJQ8WH Arachis hypogaea HOM05D000963 ORTHO05D011117 3.1e-11 73.2 49 75.5
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 4.1e-11 72.8 80 53.8
Lsat_1_v5_gn_9_35301 Lactuca sativa HOM05D000963 ORTHO05D005131 4.1e-11 72.8 43 81.4
MBI08_g48228_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 7.0e-11 72.0 43 83.7
SEGI_10061 Sequoiadendron giganteum HOM05D000963 ORTHO05D005131 7.0e-11 72.0 54 66.7
VMungo0720G2312 Vigna mungo HOM05D000963 ORTHO05D005131 7.0e-11 72.0 43 83.7
arahy.Tifrunner.gnm1.ann1.LWFR1C Arachis hypogaea HOM05D000963 ORTHO05D005131 5.9e-10 68.9 43 81.4
CSS0044962 Camellia sinensis var. sinensis HOM05D014900 ORTHO05D011791 7.7e-10 68.6 62 58.1
Medtr8g040260 Medicago truncatula HOM05D000963 ORTHO05D005131 1.3e-09 67.8 53 66.0
arahy.Tifrunner.gnm1.ann1.D10MHU Arachis hypogaea HOM05D000963 ORTHO05D005131 2.2e-09 67.0 43 81.4
arahy.Tifrunner.gnm1.ann1.JE53Y0 Arachis hypogaea HOM05D000963 ORTHO05D005131 2.2e-09 67.0 43 79.1
COL.COLO4_03250 Corchorus olitorius HOM05D011602 ORTHO05D011791 2.2e-09 67.0 47 72.3
HPP92_028387 Vanilla planifolia HOM05D000963 ORTHO05D005131 6.5e-09 65.5 43 76.7
BNapus_Darmor_BZH_scaffold_147p00040 Brassica napus HOM05D001325 ORTHO05D001540 1.1e-08 64.7 49 67.3
C09p24710 Brassica napus HOM05D001325 ORTHO05D001540 1.1e-08 64.7 49 67.3
BolC2t10588H Brassica oleracea HOM05D001325 ORTHO05D001540 1.1e-08 64.7 49 67.3
BolSC29t60558H Brassica oleracea HOM05D001325 ORTHO05D001540 1.1e-08 64.7 49 67.3
BolSC45t60898H Brassica oleracea HOM05D001325 ORTHO05D011791 1.1e-08 64.7 49 67.3
BolSC49t61131H Brassica oleracea HOM05D001325 ORTHO05D011791 1.1e-08 64.7 49 67.3
BolSC49t61154H Brassica oleracea HOM05D001325 ORTHO05D011791 1.1e-08 64.7 49 67.3
BraSC103t45495Z Brassica rapa HOM05D001325 ORTHO05D001540 1.1e-08 64.7 49 67.3
BraSC138t45523Z Brassica rapa HOM05D001325 ORTHO05D001540 1.1e-08 64.7 49 67.3
BraSC143t45667Z Brassica rapa HOM05D001325 ORTHO05D001540 1.1e-08 64.7 49 67.3
BraSC58t46451Z Brassica rapa HOM05D001325 ORTHO05D001540 1.1e-08 64.7 49 67.3
BraSC59t46512Z Brassica rapa HOM05D001325 ORTHO05D011791 1.1e-08 64.7 49 67.3
BraSC59t46559Z Brassica rapa HOM05D001325 ORTHO05D001540 1.1e-08 64.7 49 67.3
vmacro21330 Vaccinium macrocarpon HOM05D000963 ORTHO05D014445 1.1e-08 64.7 45 75.6
Oeu012823.1 Olea europaea HOM05D000963 ORTHO05D005131 1.9e-08 63.9 36 83.3
SHI36889 Sapria himalayana HOM05D000963 ORTHO05D005131 3.2e-08 63.2 40 80.0
BolSC45t60921H Brassica oleracea HOM05D001325 ORTHO05D001540 5.5e-08 62.4 49 61.2
BolSC37t60786H Brassica oleracea HOM05D001325 ORTHO05D011791 7.2e-08 62.0 49 65.3
Potri.002G073450 Populus trichocarpa HOM05D000963 ORTHO05D005131 7.2e-08 62.0 66 51.5
Sc22g0004610 Simmondsia chinensis HOM05D000963 ORTHO05D011117 7.2e-08 62.0 38 76.3
Nitab4.5_0004533g0030 Nicotiana tabacum HOM05D000963 ORTHO05D005131 9.4e-08 61.6 39 76.9
PGSC0003DMG400003919 Solanum tuberosum HOM05D000963 ORTHO05D005131 9.4e-08 61.6 61 54.1
C06p23120 Brassica napus HOM05D001325 ORTHO05D001540 1.6e-07 60.8 49 63.3
Oeu014166.1 Olea europaea HOM05D000963 ORTHO05D005131 6.1e-07 58.9 38 78.9
arahy.Tifrunner.gnm1.ann1.05XESX Arachis hypogaea HOM05D010604 ORTHO05D012476 1.4e-06 57.8 48 64.6
arahy.Tifrunner.gnm1.ann1.0LX666 Arachis hypogaea HOM05D010604 ORTHO05D012476 1.4e-06 57.8 48 64.6
arahy.Tifrunner.gnm1.ann1.KZ3I51 Arachis hypogaea HOM05D010604 ORTHO05D012476 1.4e-06 57.8 48 64.6
BraSC59t46511Z Brassica rapa HOM05D000963 ORTHO05D005131 2.3e-06 57.0 48 62.5
BolSC29t60626H Brassica oleracea HOM05D001325 ORTHO05D001540 3.0e-06 56.6 49 59.2
Medtr0002s0280 Medicago truncatula HOM05D001325 ORTHO05D001540 3.0e-06 56.6 48 64.6
Potri.006G163201 Populus trichocarpa HOM05D014900 ORTHO05D020265 3.0e-06 56.6 43 65.1
arahy.Tifrunner.gnm1.ann1.SH46T5 Arachis hypogaea HOM05D000963 ORTHO05D005131 5.2e-06 55.8 74 40.5
CsaV3_UNG209450 Cucumis sativus L. HOM05D010604 ORTHO05D012476 8.8e-06 55.1 48 62.5
Lsat_1_v5_gn_4_50261 Lactuca sativa HOM05D004291 ORTHO05D005620 8.8e-06 55.1 48 62.5
Lsat_1_v5_gn_5_152921 Lactuca sativa HOM05D010604 ORTHO05D012476 8.8e-06 55.1 48 62.5
Potri.007G062061 Populus trichocarpa HOM05D010604 ORTHO05D012476 8.8e-06 55.1 85 44.7
RhsimMtG0000800 Rhododendron simsii HOM05D010604 ORTHO05D012476 8.8e-06 55.1 48 62.5
VMungo0329G0006 Vigna mungo HOM05D010604 ORTHO05D012476 8.8e-06 55.1 48 62.5


User provided reference genes

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