Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0002010 Simmondsia chinensis HOM05D005553 ORTHO05D006866 0.0e+00 1230.7 622 100.0
Dinv12662 Davidia involucrata HOM05D005553 ORTHO05D006866 1.2e-251 873.2 619 70.0
Hund05570 Selenicereus undatus HOM05D005553 ORTHO05D006866 3.6e-245 851.7 623 69.2
CSS0002030 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 2.4e-241 839.0 618 68.6
Ah.08g214520 Amaranthus hybridus HOM05D005553 ORTHO05D006866 1.9e-238 829.3 628 67.7
vmacro14742 Vaccinium macrocarpon HOM05D005553 ORTHO05D006866 1.0e-231 807.0 603 67.3
Nn1g07927 Nelumbo nucifera HOM05D005553 ORTHO05D006866 3.1e-228 795.4 623 66.0
Hma1.2p1_1018F.1_g248400 Hydrangea macrophylla HOM05D005553 ORTHO05D006866 9.0e-228 793.9 576 68.8
Prupe.8G200200 Prunus persica HOM05D005553 ORTHO05D006866 8.4e-226 787.3 619 65.9
CSS0038931 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 3.2e-225 785.4 618 65.7
CANSAT01G0440 Cannabis sativa HOM05D005553 ORTHO05D006866 4.2e-225 785.0 604 64.9
Cfa002842 Carpinus fangiana HOM05D005553 ORTHO05D006866 2.1e-224 782.7 623 65.5
MD10G1161200 Malus domestica HOM05D005553 ORTHO05D006866 4.6e-224 781.6 590 67.1
Aqoxy2G03234 Aquilegia oxysepala HOM05D005553 ORTHO05D006866 2.3e-223 779.2 626 62.9
EL10Ac7g17878 Beta vulgaris HOM05D005553 ORTHO05D006866 4.3e-222 775.0 584 66.8
TWI36G0825 Tripterygium wilfordii HOM05D005553 ORTHO05D006866 1.9e-217 759.6 622 64.3
PSO063G5023 Papaver somniferum HOM05D005553 ORTHO05D006866 4.2e-217 758.4 592 63.0
PSO782G3165 Papaver somniferum HOM05D005553 ORTHO05D006866 3.0e-215 752.3 587 62.9
Oeu023098.1 Olea europaea HOM05D005553 ORTHO05D006866 6.7e-215 751.1 588 63.4
Cpa.g.sc8.131 Carica papaya HOM05D005553 ORTHO05D006866 8.7e-215 750.7 593 64.9
CsaV3_6G002380 Cucumis sativus L. HOM05D005553 ORTHO05D006866 8.7e-215 750.7 606 62.4
PGR044G2083 Punica granatum HOM05D005553 ORTHO05D006866 8.7e-215 750.7 621 61.2
PGSC0003DMG400017493 Solanum tuberosum HOM05D005553 ORTHO05D006866 2.5e-214 749.2 618 62.8
Lj2A1127T50 Lonicera japonica HOM05D005553 ORTHO05D006866 9.6e-214 747.3 585 64.8
Potri.002G245000 Populus trichocarpa HOM05D005553 ORTHO05D006866 2.1e-213 746.1 600 64.2
Manes.13G047900 Manihot esculenta HOM05D005553 ORTHO05D006866 2.8e-213 745.7 630 61.6
Sopen09g022770 Solanum pennellii HOM05D005553 ORTHO05D006866 2.8e-213 745.7 618 62.3
MSTRG.17999 Avicennia marina HOM05D005553 ORTHO05D006866 2.4e-212 742.7 620 61.9
Nitab4.5_0000045g0420 Nicotiana tabacum HOM05D005553 ORTHO05D006866 2.4e-212 742.7 644 60.6
Solyc09g059600.4 Solanum lycopersicum HOM05D005553 ORTHO05D006866 6.9e-212 741.1 618 61.8
Lalb_Chr03g0041571 Lupinus albus HOM05D005553 ORTHO05D006866 3.4e-211 738.8 619 62.2
CAN.G5.44 Capsicum annuum HOM05D005553 ORTHO05D006866 4.5e-211 738.4 590 63.9
GSVIVG01038357001 Vitis vinifera HOM05D005553 ORTHO05D006866 4.5e-211 738.4 586 65.0
Sabra02G0186400 Salix brachista HOM05D005553 ORTHO05D006866 2.9e-210 735.7 598 64.0
FAN27G0725 Fragaria x ananassa HOM05D005553 ORTHO05D006866 1.1e-209 733.8 591 64.0
HanXRQChr07g0189551 Helianthus annuus HOM05D005553 ORTHO05D006866 5.5e-209 731.5 625 60.5
RcHm_v2.0_Chr6g0284311 Rosa chinensis HOM05D005553 ORTHO05D006866 1.2e-208 730.3 607 62.8
CiPaw.03G146800 Carya illinoinensis HOM05D005553 ORTHO05D006866 1.6e-208 729.9 539 67.3
Cc01_g16820 Coffea canephora HOM05D005553 ORTHO05D006866 2.7e-208 729.2 582 64.4
Ca_24091_v3 Cicer arietinum L. HOM05D005553 ORTHO05D006866 6.0e-208 728.0 624 60.6
Lsat_1_v5_gn_9_13060 Lactuca sativa HOM05D005553 ORTHO05D006866 5.1e-207 724.9 625 60.3
Eucgr.K02143 Eucalyptus grandis HOM05D005553 ORTHO05D006866 6.7e-207 724.5 618 60.0
AUR62001118 Chenopodium quinoa HOM05D005553 ORTHO05D006866 1.5e-206 723.4 626 60.5
BcaC05g29748 Brassica carinata HOM05D005553 ORTHO05D006866 5.7e-206 721.5 611 62.2
FvH4_2g18680 Fragaria vesca HOM05D005553 ORTHO05D006866 7.4e-206 721.1 592 62.7
Thhalv10020331m.g Eutrema salsugineum HOM05D005553 ORTHO05D006866 2.1e-205 719.5 598 62.9
FAN24G0205 Fragaria x ananassa HOM05D005553 ORTHO05D006866 1.1e-204 717.2 592 62.3
Glyma.08G349700 Glycine max HOM05D005553 ORTHO05D006866 2.4e-204 716.1 622 60.3
Phvul.008G130400 Phaseolus vulgaris HOM05D005553 ORTHO05D006866 2.4e-204 716.1 586 62.3
Sp3g06120 Schrenkiella parvula HOM05D005553 ORTHO05D006866 2.4e-204 716.1 612 61.9
Glyma.18G166600 Glycine max HOM05D005553 ORTHO05D006866 5.3e-204 714.9 621 59.9
DCAR_023559 Daucus carota HOM05D005553 ORTHO05D006866 1.2e-203 713.8 556 63.8
Ciclev10019403m.g Citrus clementina HOM05D005553 ORTHO05D006866 2.0e-203 713.0 604 61.6
Migut.N00626 Erythranthe guttata HOM05D005553 ORTHO05D006866 3.4e-203 712.2 610 60.0
VMungo1383G1602 Vigna mungo HOM05D005553 ORTHO05D006866 3.4e-203 712.2 620 59.7
Gohir.D07G206400 Gossypium hirsutum HOM05D005553 ORTHO05D006866 1.0e-202 710.7 626 61.7
A05p41030 Brassica napus HOM05D005553 ORTHO05D006866 2.2e-202 709.5 597 62.6
Gorai.001G232700 Gossypium raimondii HOM05D005553 ORTHO05D006866 2.2e-202 709.5 627 61.7
Thecc.01G222300 Theobroma cacao HOM05D005553 ORTHO05D006866 2.2e-202 709.5 598 62.2
COL.COLO4_15644 Corchorus olitorius HOM05D005553 ORTHO05D006866 2.9e-202 709.1 602 61.8
AL3G18430 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 3.8e-202 708.8 598 62.4
arahy.Tifrunner.gnm1.ann1.T3HSIJ Arachis hypogaea HOM05D005553 ORTHO05D006866 5.0e-202 708.4 597 60.8
Duzib138G1946 Durio zibethinus HOM05D005553 ORTHO05D006866 6.5e-202 708.0 626 60.7
arahy.Tifrunner.gnm1.ann1.K25WW2 Arachis hypogaea HOM05D005553 ORTHO05D006866 1.4e-201 706.8 597 60.5
Medtr7g056117 Medicago truncatula HOM05D005553 ORTHO05D006866 1.4e-201 706.8 615 59.3
THA.LOC104818968 Tarenaya hassleriana HOM05D005553 ORTHO05D006866 2.5e-201 706.1 611 61.0
AT3G07180 Arabidopsis thaliana HOM05D005553 ORTHO05D006866 3.2e-201 705.7 611 61.2
CARHR081820 Cardamine hirsuta HOM05D005553 ORTHO05D006866 4.2e-201 705.3 597 61.5
BraA05t22829Z Brassica rapa HOM05D005553 ORTHO05D006866 5.5e-201 704.9 597 62.1
Carub.0003s0670 Capsella rubella HOM05D005553 ORTHO05D006866 9.3e-201 704.1 614 61.1
BolC5t34669H Brassica oleracea HOM05D005553 ORTHO05D006866 1.0e-199 700.7 607 61.8
Lj1g0021333 Lotus japonicus HOM05D005553 ORTHO05D006866 1.3e-199 700.3 625 58.9
C05p60190 Brassica napus HOM05D005553 ORTHO05D006866 2.3e-199 699.5 606 61.9
PSO339G3667 Papaver somniferum HOM05D005553 ORTHO05D006866 2.3e-199 699.5 577 61.0
MBI06_g04543_MAGBIO Magnolia biondii HOM05D005553 ORTHO05D006866 5.1e-199 698.4 611 59.2
BcaC05g29847 Brassica carinata HOM05D005553 ORTHO05D006866 8.7e-199 697.6 607 61.4
Nitab4.5_0000345g0010 Nicotiana tabacum HOM05D005553 ORTHO05D006866 8.7e-199 697.6 692 55.5
Sed0021986 Sechium edule HOM05D005553 ORTHO05D006866 1.1e-198 697.2 584 61.5
Gohir.A07G200000 Gossypium hirsutum HOM05D005553 ORTHO05D006866 2.5e-198 696.0 625 60.5
QL09p052121 Quercus lobata HOM05D005553 ORTHO05D006866 2.5e-198 696.0 590 62.0
QL09p052989 Quercus lobata HOM05D005553 ORTHO05D006866 1.6e-197 693.3 590 62.2
Psat3g147960 Pisum sativum HOM05D005553 ORTHO05D006866 3.7e-197 692.2 623 57.3
Atru.chr6.1417 Acer truncatum HOM05D005553 ORTHO05D006866 4.8e-197 691.8 598 60.2
AL384U10020 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 4.8e-197 691.8 594 61.6
Aa31LG5G17740 Aethionema arabicum HOM05D005553 ORTHO05D006866 1.3e-194 683.7 616 59.4
ECA247G0750 Erigeron canadensis HOM05D005553 ORTHO05D006866 5.7e-190 668.3 619 59.0
Rhsim01G0254300 Rhododendron simsii HOM05D005553 ORTHO05D006866 1.7e-189 666.8 551 63.7
ClCG09G008830 Citrullus lanatus HOM05D005553 ORTHO05D006866 1.4e-188 663.7 618 57.8
AUR62016558 Chenopodium quinoa HOM05D005553 ORTHO05D006866 1.5e-187 660.2 627 56.9
MELO3C020015.2 Cucumis melo HOM05D005553 ORTHO05D006866 5.9e-187 658.3 555 60.5
Haze_24835 Corylus avellana HOM05D005553 ORTHO05D006866 7.7e-187 657.9 607 58.6
Actinidia23714 Actinidia chinensis HOM05D005553 ORTHO05D006866 7.2e-185 651.4 618 58.9
FAN15G3597 Fragaria x ananassa HOM05D005553 ORTHO05D006866 6.1e-184 648.3 639 55.7
Actinidia09473 Actinidia chinensis HOM05D005553 ORTHO05D006866 1.5e-182 643.7 616 57.3
ATR0609G062 Amborella trichopoda HOM05D005553 ORTHO05D006866 1.7e-181 640.2 583 55.9
CDE08G1475 Ceratophyllum demersum HOM05D005553 ORTHO05D006866 7.7e-179 631.3 624 53.2
Peaxi162Scf00238g00217 Petunia axillaris HOM05D005553 ORTHO05D006866 2.9e-178 629.4 588 58.5
arahy.Tifrunner.gnm1.ann1.62F6YN Arachis hypogaea HOM05D005553 ORTHO05D006866 1.0e-175 620.9 589 55.3
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 4.0e-175 619.0 603 54.7
Haze_24838 Corylus avellana HOM05D005553 ORTHO05D006866 8.8e-175 617.8 617 54.9
TAR365G1156 Trochodendron aralioides HOM05D005553 ORTHO05D006866 2.2e-173 613.2 441 67.6
Duzib211G0174 Durio zibethinus HOM05D005553 ORTHO05D006866 1.7e-170 603.6 551 59.9
Os01g0907300 Oryza sativa ssp. japonica HOM05D005553 ORTHO05D006866 2.7e-163 579.7 618 52.1
DCAR_000631 Daucus carota HOM05D005553 ORTHO05D006866 3.5e-163 579.3 550 55.8
Zm00001eb365330 Zea mays HOM05D005553 ORTHO05D006866 2.5e-161 573.2 626 52.1
TPR.G6452 Trifolium pratense HOM05D005553 ORTHO05D006866 3.0e-159 566.2 572 53.3
Dinv19184 Davidia involucrata HOM05D005553 ORTHO05D006866 2.1e-152 543.5 436 61.5
SalBow3G3653 Salvia bowleyana HOM05D005553 ORTHO05D006866 2.6e-150 536.6 450 60.9
Potri.002G244801 Populus trichocarpa HOM05D005553 ORTHO05D006866 5.7e-150 535.4 344 74.7
arahy.Tifrunner.gnm1.ann1.B0WXN9 Arachis hypogaea HOM05D005553 ORTHO05D006866 6.4e-149 531.9 605 48.8
SHI14561 Sapria himalayana HOM05D005553 ORTHO05D006866 1.8e-143 513.8 546 52.0
Pp3c13_19160 Physcomitrium patens HOM05D005553 ORTHO05D006866 1.2e-126 458.0 598 44.3
Mapoly0045s0104 Marchantia polymorpha HOM05D005553 ORTHO05D006866 2.9e-117 426.8 614 38.6
AagrBONN_evm.TU.Sc2ySwM_117.1632 Anthoceros agrestis HOM05D005553 ORTHO05D006866 3.0e-106 390.2 563 41.9
unitig_0.g372 Utricularia gibba HOM05D005553 ORTHO05D006866 8.7e-106 388.7 531 44.3
SMO353G0187 Selaginella moellendorffii HOM05D005553 ORTHO05D006866 4.3e-97 359.8 588 36.9
arahy.Tifrunner.gnm1.ann1.ET68I8 Arachis hypogaea HOM05D005553 ORTHO05D006866 9.7e-89 332.0 324 51.9
arahy.Tifrunner.gnm1.ann1.SPK719 Arachis hypogaea HOM05D005553 ORTHO05D006866 7.2e-84 315.8 391 45.3
QL05p022419 Quercus lobata HOM05D005553 ORTHO05D006866 2.7e-83 313.9 237 62.9
arahy.Tifrunner.gnm1.ann1.YI9T1V Arachis hypogaea HOM05D005553 ORTHO05D006866 1.7e-77 294.7 399 43.1
QL02p097148 Quercus lobata HOM05D005553 ORTHO05D006866 1.1e-71 275.4 242 57.0
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 1.5e-70 271.6 239 60.3
CBR_g46590 Chara braunii HOM05D005553 ORTHO05D006866 1.4e-66 258.5 447 34.2
arahy.Tifrunner.gnm1.ann1.3A36EA Arachis hypogaea HOM05D005553 ORTHO05D006866 7.7e-62 242.7 185 68.1
HPP92_001410 Vanilla planifolia HOM05D005553 ORTHO05D006866 5.0e-61 240.0 201 59.7
arahy.Tifrunner.gnm1.ann1.DF0SS3 Arachis hypogaea HOM05D005553 ORTHO05D006866 2.2e-53 214.5 285 42.8
SEGI_35984 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 1.8e-39 168.3 265 40.0
EL10Ac7g17877 Beta vulgaris HOM05D005553 ORTHO05D006866 6.6e-29 133.3 225 40.9
SEGI_34191 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 1.9e-28 131.7 148 43.2
unitig_0.g371 Utricularia gibba HOM05D005553 ORTHO05D006866 2.9e-24 117.9 75 76.0
Cfa026900 Carpinus fangiana HOM05D005553 ORTHO05D006866 2.1e-22 111.7 328 29.0
Cre01.g013400 Chlamydomonas reinhardtii HOM05D005553 ORTHO05D006866 2.1e-22 111.7 420 24.3
arahy.Tifrunner.gnm1.ann1.UUY44J Arachis hypogaea HOM05D005553 ORTHO05D006866 1.3e-21 109.0 239 33.5
A05p41020 Brassica napus HOM05D005553 ORTHO05D006866 3.0e-21 107.8 225 39.1
TPR.G39542 Trifolium pratense HOM05D005553 ORTHO05D006866 6.4e-16 90.1 51 76.5
TAR365G0595 Trochodendron aralioides HOM05D005553 ORTHO05D006866 3.2e-15 87.8 87 57.5
MCO09G019 Micromonas commoda HOM05D005553 ORTHO05D006866 2.3e-13 81.6 166 32.5
VMungo1383G0327 Vigna mungo HOM05D005553 ORTHO05D006866 1.4e-10 72.4 53 62.3


User provided reference genes

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