Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 3.8e-189 664.8 377 100.0
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 1.5e-47 194.5 391 42.5
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 1.9e-47 194.1 437 39.8
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 4.0e-45 186.4 403 41.9
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 3.4e-44 183.3 394 40.1
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 8.3e-43 178.7 424 38.2
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 1.4e-42 177.9 420 37.1
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 1.3e-40 171.4 400 42.8
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.3e-40 171.4 369 37.9
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 1.1e-39 168.3 393 41.2
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 2.3e-37 160.6 389 36.5
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 8.9e-37 158.7 414 38.2
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.2e-36 158.3 369 38.8
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 1.5e-36 157.9 410 39.0
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 2.0e-36 157.5 421 39.2
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 2.6e-36 157.1 404 38.4
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 9.8e-36 155.2 409 39.4
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.4e-34 151.4 453 32.0
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.0e-33 147.5 449 33.2
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 5.9e-33 146.0 419 32.2
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 7.8e-33 145.6 453 33.1
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 7.8e-33 145.6 417 36.9
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 1.7e-32 144.4 397 37.3
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 2.3e-32 144.1 405 35.6
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 3.0e-32 143.7 364 37.6
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 3.9e-32 143.3 413 33.9
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 5.0e-32 142.9 382 36.4
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 5.0e-32 142.9 420 36.0
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 8.6e-32 142.1 436 36.5
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 4.3e-31 139.8 405 33.1
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 5.6e-31 139.4 408 35.8
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 7.3e-31 139.0 381 35.2
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 7.3e-31 139.0 473 35.9
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.8e-30 137.1 405 37.0
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 3.6e-30 136.7 404 32.7
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 1.0e-29 135.2 416 33.7
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 5.2e-29 132.9 402 33.6
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 5.2e-29 132.9 383 34.2
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 8.9e-29 132.1 411 33.6
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 8.9e-29 132.1 411 33.6
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 8.9e-29 132.1 363 37.5
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 1.2e-28 131.7 400 35.2
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 2.6e-28 130.6 411 33.6
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 5.8e-28 129.4 416 35.1
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 5.8e-28 129.4 424 36.1
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 7.5e-28 129.0 449 30.7
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 1.3e-27 128.3 464 33.8
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 1.7e-27 127.9 394 31.7
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 2.9e-27 127.1 476 33.0
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 2.9e-27 127.1 407 33.9
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 4.9e-27 126.3 295 36.9
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 3.2e-26 123.6 387 31.8
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 3.2e-26 123.6 369 34.1
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 4.1e-26 123.2 397 33.2
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 7.0e-26 122.5 460 30.0
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 7.0e-26 122.5 282 36.5
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 1.6e-25 121.3 194 50.5
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 6.0e-25 119.4 442 34.4
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 7.8e-25 119.0 438 32.6
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 7.8e-25 119.0 147 44.9
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 1.0e-24 118.6 230 40.9
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 1.7e-24 117.9 363 36.1
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 2.3e-24 117.5 375 36.8
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 3.0e-24 117.1 284 36.6
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 5.0e-24 116.3 432 35.9
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 6.6e-24 115.9 396 35.1
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 8.6e-24 115.5 484 31.4
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 1.1e-23 115.2 385 33.5
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 1.1e-23 115.2 143 55.9
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.5e-23 114.8 394 34.8
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 1.9e-23 114.4 362 36.5
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.9e-23 114.4 373 35.7
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 3.3e-23 113.6 399 31.1
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 5.6e-23 112.8 438 30.8
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 5.6e-23 112.8 438 30.8
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 7.3e-23 112.5 365 38.9
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 7.3e-23 112.5 272 37.9
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 9.5e-23 112.1 405 35.1
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.2e-22 111.7 374 34.2
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 1.6e-22 111.3 423 33.8
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.6e-22 111.3 215 45.6
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 2.8e-22 110.5 410 35.4
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 2.8e-22 110.5 410 35.4
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 3.6e-22 110.2 383 31.9
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 3.6e-22 110.2 444 31.1
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 6.2e-22 109.4 179 39.7
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 1.1e-21 108.6 391 36.3
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 1.8e-21 107.8 366 33.1
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 2.3e-21 107.5 298 36.2
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 2.3e-21 107.5 385 32.5
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 3.1e-21 107.1 145 60.0
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 3.1e-21 107.1 389 33.9
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 8.9e-21 105.5 113 47.8
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 1.5e-20 104.8 141 50.4
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 3.4e-20 103.6 301 32.6
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 4.4e-20 103.2 473 27.9
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 5.8e-20 102.8 151 39.7
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 1.3e-19 101.7 364 37.6
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 1.7e-19 101.3 397 32.7
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 4.9e-19 99.8 423 34.5
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 4.9e-19 99.8 200 43.0
unitig_749.g13592 Utricularia gibba HOM05D005417 ORTHO05D002591 1.1e-18 98.6 365 32.1
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.9e-18 97.8 131 42.0
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 2.4e-18 97.4 386 29.8
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.2e-18 97.1 131 41.2
TPR.G976 Trifolium pratense HOM05D005417 ORTHO05D002591 4.1e-18 96.7 345 30.4
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 5.4e-18 96.3 529 27.8
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 1.6e-17 94.7 586 28.8
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 3.5e-17 93.6 429 32.6
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.0e-16 92.0 395 28.9
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 1.7e-16 91.3 122 58.2
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 1.7e-16 91.3 196 34.2
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 2.3e-16 90.9 595 30.1
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 3.9e-16 90.1 579 29.0
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 3.9e-16 90.1 422 31.5
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 5.1e-16 89.7 579 29.0
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 8.6e-16 89.0 131 41.2
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.5e-15 88.2 131 40.5
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 5.6e-15 86.3 131 42.0
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 1.2e-14 85.1 131 42.0
Haze_03369 Corylus avellana HOM05D005417 ORTHO05D002591 3.1e-13 80.5 287 35.5
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 5.2e-13 79.7 325 33.8
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 1.5e-12 78.2 108 44.4
TPR.G6388 Trifolium pratense HOM05D005417 ORTHO05D002591 3.4e-12 77.0 50 70.0
unitig_899.g15407 Utricularia gibba HOM05D005417 ORTHO05D002591 5.8e-12 76.3 363 31.1
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 2.2e-11 74.3 398 26.9
Zm00001eb090480 Zea mays HOM05D005417 ORTHO05D002591 2.2e-11 74.3 145 47.6
AUR62016544 Chenopodium quinoa HOM05D005417 ORTHO05D002591 5.1e-08 63.2 214 34.1
Gohir.D07G164700 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.1e-07 62.0 364 28.6
Os11g0458100 Oryza sativa ssp. japonica HOM05D005417 ORTHO05D002591 1.9e-07 61.2 189 38.1
Lj5g0025661 Lotus japonicus HOM05D005417 ORTHO05D002591 4.3e-07 60.1 141 44.7
unitig_26.g9437 Utricularia gibba HOM05D005417 ORTHO05D002591 4.3e-07 60.1 308 29.2


User provided reference genes

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