Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0001840 Simmondsia chinensis HOM05D005031 ORTHO05D006098 9.6e-80 300.1 147 100.0
Atru.chr12.1707 Acer truncatum HOM05D005031 ORTHO05D006098 1.1e-54 216.9 122 82.8
Atru.chr12.1715 Acer truncatum HOM05D005031 ORTHO05D006098 1.1e-54 216.9 122 82.8
Ciclev10012924m.g Citrus clementina HOM05D005031 ORTHO05D006098 1.4e-54 216.5 122 82.0
Thecc.09G157500 Theobroma cacao HOM05D005031 ORTHO05D006098 3.1e-54 215.3 122 82.0
Duzib187G1655 Durio zibethinus HOM05D005031 ORTHO05D006098 5.3e-54 214.5 122 81.1
EL10Ac7g17961 Beta vulgaris HOM05D005031 ORTHO05D006098 6.9e-54 214.2 122 80.3
Duzib168G1565 Durio zibethinus HOM05D005031 ORTHO05D006098 9.1e-54 213.8 122 81.1
Duzib187G0728 Durio zibethinus HOM05D005031 ORTHO05D006098 1.5e-53 213.0 122 80.3
Manes.06G033000 Manihot esculenta HOM05D005031 ORTHO05D006098 2.0e-53 212.6 122 80.3
Gohir.D08G098400 Gossypium hirsutum HOM05D005031 ORTHO05D006098 2.6e-53 212.2 122 78.7
TWI73G0469 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 3.4e-53 211.8 122 80.3
COL.COLO4_10074 Corchorus olitorius HOM05D005031 ORTHO05D006098 4.5e-53 211.5 122 78.7
GSVIVG01033204001 Vitis vinifera HOM05D005031 ORTHO05D006098 4.5e-53 211.5 122 80.3
Gorai.004G106100 Gossypium raimondii HOM05D005031 ORTHO05D006098 1.0e-52 210.3 122 77.9
Sabra18G0087000 Salix brachista HOM05D005031 ORTHO05D006098 1.3e-52 209.9 122 80.3
Hund18050 Selenicereus undatus HOM05D005031 ORTHO05D006098 1.3e-52 209.9 122 78.7
Gohir.A08G087500 Gossypium hirsutum HOM05D005031 ORTHO05D006098 1.7e-52 209.5 122 77.0
Oeu045637.1 Olea europaea HOM05D005031 ORTHO05D006098 2.2e-52 209.1 122 79.5
MELO3C004109.2 Cucumis melo HOM05D005031 ORTHO05D006098 2.9e-52 208.8 122 81.1
Potri.018G101100 Populus trichocarpa HOM05D005031 ORTHO05D006098 2.9e-52 208.8 122 77.9
Aqoxy5G00990 Aquilegia oxysepala HOM05D005031 ORTHO05D006098 3.8e-52 208.4 127 75.6
Oeu031856.2 Olea europaea HOM05D005031 ORTHO05D006098 3.8e-52 208.4 122 78.7
Glyma.02G207700 Glycine max HOM05D005031 ORTHO05D006098 5.0e-52 208.0 122 78.7
Glyma.17G070000 Glycine max HOM05D005031 ORTHO05D006098 5.0e-52 208.0 122 78.7
VMungo1215G0734 Vigna mungo HOM05D005031 ORTHO05D006098 5.0e-52 208.0 122 78.7
ClCG11G012690 Citrullus lanatus HOM05D005031 ORTHO05D006098 6.5e-52 207.6 122 80.3
TPR.G1244 Trifolium pratense HOM05D005031 ORTHO05D006098 6.5e-52 207.6 122 77.0
CiPaw.06G050600 Carya illinoinensis HOM05D005031 ORTHO05D006098 1.1e-51 206.8 122 77.0
CsaV3_2G007780 Cucumis sativus L. HOM05D005031 ORTHO05D006098 1.4e-51 206.5 122 80.3
PGR031G2537 Punica granatum HOM05D005031 ORTHO05D006098 1.9e-51 206.1 122 77.0
TAR636G0261 Trochodendron aralioides HOM05D005031 ORTHO05D006098 1.9e-51 206.1 122 77.0
Ca_21160_v3 Cicer arietinum L. HOM05D005031 ORTHO05D006098 2.5e-51 205.7 122 76.2
Phvul.010G125500 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 2.5e-51 205.7 122 77.0
Sed0023985 Sechium edule HOM05D005031 ORTHO05D006098 3.2e-51 205.3 122 79.5
Phvul.003G152700 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 4.2e-51 204.9 122 77.0
QL01p011713 Quercus lobata HOM05D005031 ORTHO05D006098 7.2e-51 204.1 122 76.2
Eucgr.H00166 Eucalyptus grandis HOM05D005031 ORTHO05D006098 9.4e-51 203.8 122 76.2
Nn8g40193 Nelumbo nucifera HOM05D005031 ORTHO05D006098 9.4e-51 203.8 122 75.4
Hma1.2p1_1493F.1_g286836 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.2e-50 203.4 122 74.6
Hma1.2p1_2438F.1_g322190 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.2e-50 203.4 122 74.6
arahy.Tifrunner.gnm1.ann1.QFVN2V Arachis hypogaea HOM05D005031 ORTHO05D006098 2.1e-50 202.6 122 76.2
FAN21G1649 Fragaria x ananassa HOM05D005031 ORTHO05D006098 2.7e-50 202.2 122 74.6
Lj6g0018969 Lotus japonicus HOM05D005031 ORTHO05D006098 2.7e-50 202.2 127 72.4
Medtr4g130180 Medicago truncatula HOM05D005031 ORTHO05D006098 2.7e-50 202.2 122 74.6
Psat0s2826g0160 Pisum sativum HOM05D005031 ORTHO05D006098 4.7e-50 201.4 122 75.4
SalBow1G8617 Salvia bowleyana HOM05D005031 ORTHO05D006098 4.7e-50 201.4 122 77.9
Migut.K00291 Erythranthe guttata HOM05D005031 ORTHO05D006098 6.1e-50 201.1 122 74.6
Lalb_Chr07g0180011 Lupinus albus HOM05D005031 ORTHO05D006098 6.1e-50 201.1 122 74.6
RcHm_v2.0_Chr4g0405231 Rosa chinensis HOM05D005031 ORTHO05D006098 7.9e-50 200.7 122 73.8
Actinidia38656 Actinidia chinensis HOM05D005031 ORTHO05D006098 1.0e-49 200.3 122 75.4
CDE05G2574 Ceratophyllum demersum HOM05D005031 ORTHO05D006098 1.0e-49 200.3 122 74.6
Hma1.2p1_2725F.1_g327560 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.0e-49 200.3 122 76.2
Thhalv10026393m.g Eutrema salsugineum HOM05D005031 ORTHO05D006098 1.4e-49 199.9 122 73.8
FvH4_3g25860 Fragaria vesca HOM05D005031 ORTHO05D006098 1.4e-49 199.9 122 73.0
FAN11G2096 Fragaria x ananassa HOM05D005031 ORTHO05D006098 1.4e-49 199.9 122 73.0
FAN25G2017 Fragaria x ananassa HOM05D005031 ORTHO05D006098 1.4e-49 199.9 122 73.8
vmacro01000 Vaccinium macrocarpon HOM05D005031 ORTHO05D006098 1.4e-49 199.9 122 73.8
BcaNung00560 Brassica carinata HOM05D005031 ORTHO05D006098 1.8e-49 199.5 122 73.0
BcaNung00561 Brassica carinata HOM05D005031 ORTHO05D006098 1.8e-49 199.5 122 73.0
C07p57970 Brassica napus HOM05D005031 ORTHO05D006098 1.8e-49 199.5 122 73.0
BolC7t46255H Brassica oleracea HOM05D005031 ORTHO05D006098 1.8e-49 199.5 122 73.0
Sp7g28380 Schrenkiella parvula HOM05D005031 ORTHO05D006098 1.8e-49 199.5 122 74.6
Solyc07g006150.3 Solanum lycopersicum HOM05D005031 ORTHO05D006098 1.8e-49 199.5 122 75.4
Sopen07g002260 Solanum pennellii HOM05D005031 ORTHO05D006098 1.8e-49 199.5 122 75.4
arahy.Tifrunner.gnm1.ann1.0TL0BP Arachis hypogaea HOM05D005031 ORTHO05D006098 2.3e-49 199.1 121 76.0
A03p59910 Brassica napus HOM05D005031 ORTHO05D006098 2.3e-49 199.1 122 73.0
CANSAT11G2524 Cannabis sativa HOM05D005031 ORTHO05D006098 2.3e-49 199.1 122 76.2
Dinv41325 Davidia involucrata HOM05D005031 ORTHO05D006098 2.3e-49 199.1 122 73.8
THA.LOC104803530 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 2.3e-49 199.1 122 74.6
Hma1.2p1_2290F.1_g319050 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 3.0e-49 198.7 122 75.4
Nitab4.5_0001036g0100 Nicotiana tabacum HOM05D005031 ORTHO05D006098 3.0e-49 198.7 122 73.8
Prupe.1G100400 Prunus persica HOM05D005031 ORTHO05D006098 3.9e-49 198.4 122 73.0
BraA03t15048Z Brassica rapa HOM05D005031 ORTHO05D006098 5.1e-49 198.0 122 72.1
RcHm_v2.0_Chr5g0047191 Rosa chinensis HOM05D005031 ORTHO05D006098 5.1e-49 198.0 122 72.1
AL4G13970 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 6.7e-49 197.6 122 76.2
CAN.G1190.6 Capsicum annuum HOM05D005031 ORTHO05D006098 6.7e-49 197.6 122 74.6
Nitab4.5_0002545g0040 Nicotiana tabacum HOM05D005031 ORTHO05D006098 8.8e-49 197.2 122 73.0
HPP92_025776 Vanilla planifolia HOM05D005031 ORTHO05D006098 8.8e-49 197.2 122 75.4
MD00G1059200 Malus domestica HOM05D005031 ORTHO05D006098 1.1e-48 196.8 122 73.0
THA.LOC104819960 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 1.1e-48 196.8 122 72.1
Actinidia33308 Actinidia chinensis HOM05D005031 ORTHO05D006098 1.5e-48 196.4 122 75.4
A01p07680 Brassica napus HOM05D005031 ORTHO05D006098 1.5e-48 196.4 134 67.9
BraA01t00711Z Brassica rapa HOM05D005031 ORTHO05D006098 1.5e-48 196.4 134 67.9
SGA_v2.0_scaffold12G06032 Striga asiatica HOM05D005031 ORTHO05D006098 1.5e-48 196.4 122 76.2
ATR0580G158 Amborella trichopoda HOM05D005031 ORTHO05D006098 2.0e-48 196.1 122 72.1
PGSC0003DMG400011218 Solanum tuberosum HOM05D005031 ORTHO05D006098 3.3e-48 195.3 122 73.8
C01p08550 Brassica napus HOM05D005031 ORTHO05D006098 5.7e-48 194.5 122 71.3
Lj4g0007960 Lotus japonicus HOM05D005031 ORTHO05D006098 7.4e-48 194.1 122 73.0
Aa31LG2G20010 Aethionema arabicum HOM05D005031 ORTHO05D006098 9.7e-48 193.7 122 73.8
AT2G23940 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 9.7e-48 193.7 122 73.0
Carub.0004s0310 Capsella rubella HOM05D005031 ORTHO05D006098 9.7e-48 193.7 122 73.0
PSO017G4787 Papaver somniferum HOM05D005031 ORTHO05D006098 9.7e-48 193.7 122 73.0
PSO478G0084 Papaver somniferum HOM05D005031 ORTHO05D006098 9.7e-48 193.7 122 73.0
MD00G1091200 Malus domestica HOM05D005031 ORTHO05D006098 3.7e-47 191.8 122 70.5
CARHR184610 Cardamine hirsuta HOM05D005031 ORTHO05D006098 6.3e-47 191.0 122 73.0
MSTRG.10716 Avicennia marina HOM05D005031 ORTHO05D006098 1.1e-46 190.3 122 72.1
Peaxi162Scf00038g00324 Petunia axillaris HOM05D005031 ORTHO05D006098 1.1e-46 190.3 122 71.3
BcaC09g51840 Brassica carinata HOM05D005031 ORTHO05D006098 3.1e-46 188.7 122 69.7
PSO675G4517 Papaver somniferum HOM05D005031 ORTHO05D006098 5.3e-46 188.0 122 70.5
AL7G21640 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 1.5e-45 186.4 122 69.7
BolC1t00831H Brassica oleracea HOM05D005031 ORTHO05D006098 2.0e-45 186.0 122 68.9
BolC1t00834H Brassica oleracea HOM05D005031 ORTHO05D006098 2.0e-45 186.0 122 68.9
BolC1t00837H Brassica oleracea HOM05D005031 ORTHO05D006098 2.0e-45 186.0 122 68.9
ECA234G3840 Erigeron canadensis HOM05D005031 ORTHO05D006098 7.7e-45 184.1 122 68.9
Rhsim03G0261100 Rhododendron simsii HOM05D005031 ORTHO05D006098 3.8e-44 181.8 144 61.8
HanXRQChr10g0307831 Helianthus annuus HOM05D005031 ORTHO05D006098 5.0e-44 181.4 122 70.5
Zm00001eb186920 Zea mays HOM05D005031 ORTHO05D006098 6.5e-44 181.0 122 68.0
TWI23G1034 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 1.1e-43 180.3 106 75.5
CSS0024126 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 4.2e-43 178.3 122 66.4
CSS0012616 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 5.5e-43 177.9 122 66.4
AT4G30500 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 1.6e-42 176.4 122 66.4
Cc06_g14310 Coffea canephora HOM05D005031 ORTHO05D006098 2.3e-41 172.6 122 66.4
Haze_21256 Corylus avellana HOM05D005031 ORTHO05D006098 2.0e-40 169.5 95 81.1
Ah.08g218880 Amaranthus hybridus HOM05D005031 ORTHO05D006098 4.4e-40 168.3 94 81.9
Rhsim03G0260600 Rhododendron simsii HOM05D005031 ORTHO05D006098 7.4e-40 167.5 187 48.1
AUR62022155 Chenopodium quinoa HOM05D005031 ORTHO05D006098 4.8e-39 164.9 94 79.8
MBI14_g16418_MAGBIO Magnolia biondii HOM05D005031 ORTHO05D006098 8.2e-39 164.1 99 72.7
AUR62001168 Chenopodium quinoa HOM05D005031 ORTHO05D006098 1.4e-38 163.3 94 79.8
Lsat_1_v5_gn_5_88201 Lactuca sativa HOM05D005031 ORTHO05D006098 1.4e-38 163.3 105 71.4
Os02g0666800 Oryza sativa ssp. japonica HOM05D005031 ORTHO05D006098 5.3e-38 161.4 122 60.7
Sed0023066 Sechium edule HOM05D005031 ORTHO05D006098 9.1e-38 160.6 109 71.6
Cpa.g.sc743.3 Carica papaya HOM05D005031 ORTHO05D006098 5.9e-37 157.9 93 77.4
AagrBONN_evm.TU.Sc2ySwM_368.3216 Anthoceros agrestis HOM05D005031 ORTHO05D006098 7.7e-37 157.5 127 54.3
SMO164G0234 Selaginella moellendorffii HOM05D005031 ORTHO05D006098 1.5e-35 153.3 127 55.1
CBR_g3690 Chara braunii HOM05D005031 ORTHO05D006098 5.2e-33 144.8 122 52.5
Mapoly0003s0226 Marchantia polymorpha HOM05D005031 ORTHO05D006098 6.7e-33 144.4 122 50.8
Pp3c11_17250 Physcomitrium patens HOM05D005031 ORTHO05D006098 2.7e-29 132.5 123 53.7
CARHR238390 Cardamine hirsuta HOM05D005031 ORTHO05D006098 1.6e-26 123.2 96 56.2
BcaB04g19089 Brassica carinata HOM05D005031 ORTHO05D006098 3.0e-25 119.0 75 69.3
BcaNung01743 Brassica carinata HOM05D005031 ORTHO05D006098 2.0e-24 116.3 75 66.7
Lj7A465G52 Lonicera japonica HOM05D005031 ORTHO05D006098 4.4e-24 115.2 78 66.7
BcaB08g34788 Brassica carinata HOM05D005031 ORTHO05D006098 2.3e-20 102.8 74 64.9
MELO3C010414.2 Cucumis melo HOM05D005031 ORTHO05D006098 2.5e-19 99.4 53 84.9
MELO3C020438.2 Cucumis melo HOM05D005031 ORTHO05D006098 7.2e-19 97.8 58 79.3
Cre02.g096850 Chlamydomonas reinhardtii HOM05D005031 ORTHO05D006098 8.0e-18 94.4 128 40.6
MELO3C032992.2 Cucumis melo HOM05D005031 ORTHO05D006098 5.7e-16 88.2 48 83.3
PRCOL_00004780 Prasinoderma coloniale HOM05D005031 ORTHO05D006098 9.2e-14 80.9 116 32.8
MELO3C033057.2 Cucumis melo HOM05D005031 ORTHO05D006098 4.5e-13 78.6 38 89.5
MCO15G043 Micromonas commoda HOM05D005031 ORTHO05D006098 1.1e-11 73.9 124 35.5
unitig_62.g23488 Utricularia gibba HOM05D005031 ORTHO05D006098 2.0e-08 63.2 33 78.8
Rhsim03G0261000 Rhododendron simsii HOM05D005031 ORTHO05D006098 1.1e-06 57.4 32 71.9
CARHR184590 Cardamine hirsuta HOM05D005031 ORTHO05D006098 2.4e-06 56.2 48 52.1
MELO3C033061.2 Cucumis melo HOM05D005031 ORTHO05D006098 7.0e-06 54.7 28 82.1


User provided reference genes

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