Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0001680 Simmondsia chinensis HOM05D006548 ORTHO05D008064 2.3e-264 915.2 539 100.0
Ah.11g050830 Amaranthus hybridus HOM05D006548 ORTHO05D008064 8.2e-52 209.1 147 76.9
Manes.12G059600 Manihot esculenta HOM05D006548 ORTHO05D008064 6.9e-51 206.1 144 73.6
PGSC0003DMG400027686 Solanum tuberosum HOM05D006548 ORTHO05D008064 2.2e-49 201.1 126 79.4
Sopen06g034400 Solanum pennellii HOM05D006548 ORTHO05D008064 2.9e-49 200.7 142 74.6
Peaxi162Scf00372g00041 Petunia axillaris HOM05D006548 ORTHO05D008064 2.5e-48 197.6 143 73.4
AUR62028648 Chenopodium quinoa HOM05D006548 ORTHO05D008064 5.5e-48 196.4 151 70.2
Nn3g18599 Nelumbo nucifera HOM05D006548 ORTHO05D008064 5.5e-48 196.4 136 73.5
PSO017G5831 Papaver somniferum HOM05D006548 ORTHO05D008064 5.5e-48 196.4 142 71.8
CAN.G874.34 Capsicum annuum HOM05D006548 ORTHO05D008064 7.2e-48 196.1 131 77.1
Manes.13G055300 Manihot esculenta HOM05D006548 ORTHO05D008064 9.4e-48 195.7 139 71.9
Nitab4.5_0011925g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 1.6e-47 194.9 139 71.9
Nitab4.5_0002311g0090 Nicotiana tabacum HOM05D006548 ORTHO05D008064 2.1e-47 194.5 120 79.2
MSTRG.17967 Avicennia marina HOM05D006548 ORTHO05D008064 2.7e-47 194.1 139 70.5
DCAR_030798 Daucus carota HOM05D006548 ORTHO05D008064 2.7e-47 194.1 143 69.9
HanXRQChr08g0231851 Helianthus annuus HOM05D006548 ORTHO05D008064 3.6e-47 193.7 139 69.8
Nitab4.5_0001348g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 4.6e-47 193.4 128 75.8
Nitab4.5_0007144g0040 Nicotiana tabacum HOM05D006548 ORTHO05D008064 4.6e-47 193.4 128 75.8
vmacro02826 Vaccinium macrocarpon HOM05D006548 ORTHO05D008064 4.6e-47 193.4 141 69.5
PSO675G8742 Papaver somniferum HOM05D006548 ORTHO05D008064 6.1e-47 193.0 140 71.4
Rhsim13G0053600 Rhododendron simsii HOM05D006548 ORTHO05D008064 6.1e-47 193.0 141 70.9
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 1.8e-46 191.4 136 70.6
Thecc.01G209700 Theobroma cacao HOM05D006548 ORTHO05D008064 1.8e-46 191.4 135 74.1
Lj2P1115T39 Lonicera japonica HOM05D006548 ORTHO05D008064 2.3e-46 191.0 138 70.3
MBI08_g14954_MAGBIO Magnolia biondii HOM05D006659 ORTHO05D008064 2.3e-46 191.0 141 70.9
Oeu051515.1 Olea europaea HOM05D006548 ORTHO05D008064 2.3e-46 191.0 134 68.7
Sabra02G0182000 Salix brachista HOM05D006548 ORTHO05D008064 2.3e-46 191.0 144 70.8
PGR083G0463 Punica granatum HOM05D006548 ORTHO05D008064 3.0e-46 190.7 144 68.1
Cc01_g16030 Coffea canephora HOM05D006548 ORTHO05D008064 3.9e-46 190.3 145 70.3
Potri.002G239000 Populus trichocarpa HOM05D006548 ORTHO05D008064 6.7e-46 189.5 136 72.8
COL.COLO4_06931 Corchorus olitorius HOM05D006548 ORTHO05D008064 1.5e-45 188.3 130 74.6
CiPaw.13G058400 Carya illinoinensis HOM05D006548 ORTHO05D008064 2.5e-45 187.6 124 74.2
Hma1.2p1_0161F.1_g071510 Hydrangea macrophylla HOM05D006548 ORTHO05D008064 3.3e-45 187.2 140 67.1
CSS0021481 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 4.3e-45 186.8 148 66.9
TAR362G1118 Trochodendron aralioides HOM05D006548 ORTHO05D008064 4.3e-45 186.8 139 67.6
BolC5t34638H Brassica oleracea HOM05D006548 ORTHO05D008064 5.7e-45 186.4 138 69.6
Gorai.007G160300 Gossypium raimondii HOM05D006548 ORTHO05D008064 5.7e-45 186.4 128 74.2
Nn4g25121 Nelumbo nucifera HOM05D006548 ORTHO05D008064 5.7e-45 186.4 136 70.6
Aqoxy2G04054 Aquilegia oxysepala HOM05D006548 ORTHO05D008064 9.7e-45 185.7 148 66.9
Gohir.A11G143200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 9.7e-45 185.7 128 74.2
EL10Ac5g10597 Beta vulgaris HOM05D006548 ORTHO05D008064 1.3e-44 185.3 107 81.3
Sabra14G0135300 Salix brachista HOM05D006548 ORTHO05D008064 1.3e-44 185.3 144 69.4
PGSC0003DMG400020639 Solanum tuberosum HOM05D006548 ORTHO05D008064 1.3e-44 185.3 106 83.0
Gohir.D11G149500 Gossypium hirsutum HOM05D006548 ORTHO05D008064 1.7e-44 184.9 136 69.9
SGA_v2.0_scaffold95G28706 Striga asiatica HOM05D006548 ORTHO05D008064 1.7e-44 184.9 107 81.3
Sed0004612 Sechium edule HOM05D006548 ORTHO05D008064 2.2e-44 184.5 144 65.3
MD10G1150500 Malus domestica HOM05D006548 ORTHO05D008064 3.7e-44 183.7 141 66.7
Solyc06g007630.1 Solanum lycopersicum HOM05D006548 ORTHO05D008064 3.7e-44 183.7 106 81.1
Sopen06g002520 Solanum pennellii HOM05D006548 ORTHO05D008064 3.7e-44 183.7 106 81.1
THA.LOC104819003 Tarenaya hassleriana HOM05D006548 ORTHO05D008064 3.7e-44 183.7 147 65.3
HPP92_002744 Vanilla planifolia HOM05D006548 ORTHO05D008064 3.7e-44 183.7 130 68.5
A05p40730 Brassica napus HOM05D006548 ORTHO05D008064 4.8e-44 183.3 136 69.1
BraA05t22804Z Brassica rapa HOM05D006548 ORTHO05D008064 4.8e-44 183.3 136 69.1
Potri.014G177100 Populus trichocarpa HOM05D006548 ORTHO05D008064 4.8e-44 183.3 144 69.4
Gohir.D07G202600 Gossypium hirsutum HOM05D006548 ORTHO05D008064 6.3e-44 183.0 141 67.4
Gorai.001G228000 Gossypium raimondii HOM05D006548 ORTHO05D008064 6.3e-44 183.0 141 67.4
C05p59840 Brassica napus HOM05D006548 ORTHO05D008064 1.4e-43 181.8 142 64.8
Prupe.8G188900 Prunus persica HOM05D006548 ORTHO05D008064 2.4e-43 181.0 149 64.4
BcaC05g29539 Brassica carinata HOM05D006548 ORTHO05D008064 3.1e-43 180.6 142 66.2
ClCG09G007890 Citrullus lanatus HOM05D006548 ORTHO05D008064 4.1e-43 180.3 149 61.7
Cfa010631 Carpinus fangiana HOM05D006548 ORTHO05D008064 5.3e-43 179.9 146 65.1
Ciclev10017030m.g Citrus clementina HOM05D006548 ORTHO05D008064 5.3e-43 179.9 136 71.3
Duzib138G0849 Durio zibethinus HOM05D006548 ORTHO05D008064 6.9e-43 179.5 140 65.7
CSS0032607 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 9.1e-43 179.1 105 81.0
Sp3g06390 Schrenkiella parvula HOM05D006548 ORTHO05D008064 1.5e-42 178.3 145 64.1
Haze_03573 Corylus avellana HOM05D006548 ORTHO05D008064 2.0e-42 177.9 148 63.5
ECA247G0922 Erigeron canadensis HOM05D006548 ORTHO05D008064 2.0e-42 177.9 143 65.0
Migut.N00670 Erythranthe guttata HOM05D006548 ORTHO05D008064 2.0e-42 177.9 140 64.3
Thhalv10021677m.g Eutrema salsugineum HOM05D006548 ORTHO05D008064 2.6e-42 177.6 133 67.7
Atru.chr6.3534 Acer truncatum HOM05D006548 ORTHO05D008064 3.4e-42 177.2 138 65.2
RcHm_v2.0_Chr6g0282621 Rosa chinensis HOM05D006548 ORTHO05D008064 7.7e-42 176.0 138 64.5
VMungo1383G2587 Vigna mungo HOM05D006548 ORTHO05D008064 7.7e-42 176.0 144 63.9
BcaB03g14699 Brassica carinata HOM05D006548 ORTHO05D008064 1.0e-41 175.6 136 65.4
Carub.0003s0703 Capsella rubella HOM05D006548 ORTHO05D008064 1.3e-41 175.3 140 65.0
CARHR082130 Cardamine hirsuta HOM05D006548 ORTHO05D008064 1.3e-41 175.3 144 62.5
Duzib211G0675 Durio zibethinus HOM05D006548 ORTHO05D008064 1.3e-41 175.3 125 70.4
AL3G18800 Arabidopsis lyrata HOM05D006548 ORTHO05D008064 1.7e-41 174.9 140 63.6
AT3G07480 Arabidopsis thaliana HOM05D006548 ORTHO05D008064 1.7e-41 174.9 140 63.6
Lalb_Chr03g0040981 Lupinus albus HOM05D006548 ORTHO05D008064 1.7e-41 174.9 144 62.5
Lalb_Chr01g0021941 Lupinus albus HOM05D006548 ORTHO05D008064 2.9e-41 174.1 147 61.9
FAN24G3284 Fragaria x ananassa HOM05D006548 ORTHO05D008064 6.5e-41 172.9 136 63.2
CsaV3_7G027180 Cucumis sativus L. HOM05D006548 ORTHO05D008064 8.5e-41 172.6 150 60.7
Glyma.08G343100 Glycine max HOM05D006548 ORTHO05D008064 8.5e-41 172.6 143 62.2
Os09g0514600 Oryza sativa ssp. japonica HOM05D006548 ORTHO05D008064 8.5e-41 172.6 141 61.7
FvH4_2g17650 Fragaria vesca HOM05D006548 ORTHO05D008064 1.1e-40 172.2 138 62.3
Psat3g151760 Pisum sativum HOM05D006548 ORTHO05D008064 1.1e-40 172.2 140 63.6
Zm00001eb102720 Zea mays HOM05D006548 ORTHO05D008064 1.4e-40 171.8 107 73.8
FAN27G0042 Fragaria x ananassa HOM05D006548 ORTHO05D008064 2.5e-40 171.0 138 61.6
FAN27G0390 Fragaria x ananassa HOM05D006548 ORTHO05D008064 2.5e-40 171.0 138 61.6
Aa31LG5G18040 Aethionema arabicum HOM05D006548 ORTHO05D008064 3.2e-40 170.6 144 61.8
Phvul.008G137800 Phaseolus vulgaris HOM05D006548 ORTHO05D008064 3.2e-40 170.6 149 60.4
TPR.G26806 Trifolium pratense HOM05D006548 ORTHO05D008064 3.2e-40 170.6 140 60.7
QL09p047049 Quercus lobata HOM05D006548 ORTHO05D008064 4.2e-40 170.2 141 62.4
TWI75G1339 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 4.2e-40 170.2 134 62.7
ATR0824G029 Amborella trichopoda HOM05D006548 ORTHO05D008064 7.2e-40 169.5 130 63.8
arahy.Tifrunner.gnm1.ann1.C7NXRU Arachis hypogaea HOM05D006548 ORTHO05D008064 7.2e-40 169.5 135 64.4
arahy.Tifrunner.gnm1.ann1.I0E60T Arachis hypogaea HOM05D006548 ORTHO05D008064 1.2e-39 168.7 105 74.3
unitig_61.g26345 Utricularia gibba HOM05D006548 ORTHO05D008064 1.2e-39 168.7 139 60.4
CANSAT01G2941 Cannabis sativa HOM05D006548 ORTHO05D008064 4.7e-39 166.8 105 72.4
MELO3C015717.2 Cucumis melo HOM05D006548 ORTHO05D008064 4.7e-39 166.8 149 59.1
Ca_07442_v3 Cicer arietinum L. HOM05D006548 ORTHO05D008064 6.1e-39 166.4 129 62.8
Lj1g0008534 Lotus japonicus HOM05D006548 ORTHO05D008064 1.0e-38 165.6 148 60.1
Glyma.18G153900 Glycine max HOM05D006548 ORTHO05D008064 1.4e-38 165.2 142 60.6
Zm00001eb318350 Zea mays HOM05D006548 ORTHO05D008064 6.7e-38 162.9 102 73.5
TWI36G0698 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 1.1e-37 162.2 136 63.2
TWI18G0731 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 2.0e-37 161.4 136 63.2
Medtr7g051230 Medicago truncatula HOM05D006548 ORTHO05D008064 2.6e-37 161.0 139 57.6
GSVIVG01003797001 Vitis vinifera HOM05D006548 ORTHO05D008064 3.3e-37 160.6 104 68.3
Lsat_1_v5_gn_9_16480 Lactuca sativa HOM05D006548 ORTHO05D008064 2.0e-34 151.4 139 60.4
Gohir.A07G196200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 2.1e-31 141.4 83 78.3
Ciclev10013747m.g Citrus clementina HOM05D006548 ORTHO05D008064 6.3e-28 129.8 84 76.2
Pp3c2_31000 Physcomitrium patens HOM05D006548 ORTHO05D008064 6.3e-28 129.8 108 55.6
AagrBONN_evm.TU.Sc2ySwM_362.984 Anthoceros agrestis HOM05D006548 ORTHO05D008064 4.5e-26 123.6 120 50.8
BcaC05g29538 Brassica carinata HOM05D006548 ORTHO05D008064 4.5e-26 123.6 102 63.7
Mapoly0085s0036 Marchantia polymorpha HOM05D006548 ORTHO05D008064 8.3e-20 102.8 132 43.9
CDE12G0850 Ceratophyllum demersum HOM05D006548 ORTHO05D008064 4.1e-19 100.5 60 71.7
C03p67920 Brassica napus HOM05D006548 ORTHO05D008064 3.2e-16 90.9 76 61.8
BcaC01g02172 Brassica carinata HOM05D006548 ORTHO05D008064 2.1e-15 88.2 76 60.5
SEGI_16405 Sequoiadendron giganteum HOM05D002489 ORTHO05D002653 2.1e-15 88.2 60 68.3
Sc07g0005540 Simmondsia chinensis HOM05D039465 ORTHO05D000007 5.0e-09 67.0 71 57.7
Actinidia30005 Actinidia chinensis HOM05D006548 ORTHO05D008064 1.6e-07 62.0 82 46.3
SMO119G0279 Selaginella moellendorffii HOM05D006548 ORTHO05D008064 8.0e-07 59.7 104 31.7


User provided reference genes

Program Settings