Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0001580 Simmondsia chinensis HOM05D007415 ORTHO05D009324 1.1e-150 536.6 259 100.0
Gohir.D07G201100 Gossypium hirsutum HOM05D007415 ORTHO05D009324 1.6e-82 310.1 236 65.7
Gorai.001G225800 Gossypium raimondii HOM05D007415 ORTHO05D009324 1.6e-82 310.1 236 65.7
CSS0038002 Camellia sinensis var. sinensis HOM05D007415 ORTHO05D009324 3.1e-81 305.8 259 61.4
Ciclev10016323m.g Citrus clementina HOM05D007415 ORTHO05D009324 9.0e-81 304.3 255 59.6
Atru.chr6.3473 Acer truncatum HOM05D007415 ORTHO05D009324 1.7e-79 300.1 255 58.8
Thecc.01G204000 Theobroma cacao HOM05D007415 ORTHO05D009324 1.1e-78 297.4 236 62.7
Manes.12G058800 Manihot esculenta HOM05D007415 ORTHO05D009324 3.2e-78 295.8 259 57.5
Cfa006296 Carpinus fangiana HOM05D007415 ORTHO05D009324 7.1e-78 294.7 243 60.9
PGR044G2664 Punica granatum HOM05D007415 ORTHO05D009324 1.6e-77 293.5 257 58.4
Potri.014G197700 Populus trichocarpa HOM05D007415 ORTHO05D009324 2.7e-77 292.7 239 58.6
Eucgr.K02344 Eucalyptus grandis HOM05D007415 ORTHO05D009324 7.9e-77 291.2 235 60.9
Dinv02951 Davidia involucrata HOM05D007415 ORTHO05D009324 1.3e-76 290.4 238 61.8
TAR636G2599 Trochodendron aralioides HOM05D007415 ORTHO05D009324 2.3e-76 289.7 236 59.7
CSS0018954 Camellia sinensis var. sinensis HOM05D007415 ORTHO05D009324 8.7e-76 287.7 266 59.4
COL.COLO4_19724 Corchorus olitorius HOM05D007415 ORTHO05D009324 8.7e-76 287.7 236 60.2
vmacro14670 Vaccinium macrocarpon HOM05D007415 ORTHO05D009324 1.5e-75 287.0 261 56.7
Actinidia23816 Actinidia chinensis HOM05D007415 ORTHO05D009324 1.9e-75 286.6 241 58.5
Prupe.8G267300 Prunus persica HOM05D007415 ORTHO05D009324 2.5e-75 286.2 238 60.9
Oeu058216.1 Olea europaea HOM05D007415 ORTHO05D009324 5.6e-75 285.0 253 57.3
CiPaw.07G119000 Carya illinoinensis HOM05D007415 ORTHO05D009324 2.1e-74 283.1 262 57.6
Hund02818 Selenicereus undatus HOM05D007415 ORTHO05D009324 2.1e-74 283.1 196 72.4
EL10Ac5g10567 Beta vulgaris HOM05D007415 ORTHO05D009324 1.4e-73 280.4 206 69.4
HanXRQChr08g0230811 Helianthus annuus HOM05D007415 ORTHO05D009324 1.4e-73 280.4 254 56.3
MSTRG.21289 Avicennia marina HOM05D007415 ORTHO05D009324 1.8e-73 280.0 238 59.2
Migut.D00758 Erythranthe guttata HOM05D007415 ORTHO05D009324 1.8e-73 280.0 240 55.8
Lsat_1_v5_gn_9_15740 Lactuca sativa HOM05D007415 ORTHO05D009324 1.8e-73 280.0 256 56.2
MD11G1318200 Malus domestica HOM05D007415 ORTHO05D009324 2.6e-72 276.2 240 59.6
Cc01_g15740 Coffea canephora HOM05D007415 ORTHO05D009324 5.8e-72 275.0 240 57.9
Sopen09g012680 Solanum pennellii HOM05D007415 ORTHO05D009324 5.8e-72 275.0 233 56.7
MD03G1298900 Malus domestica HOM05D007415 ORTHO05D009324 7.6e-72 274.6 241 59.3
Nitab4.5_0011643g0030 Nicotiana tabacum HOM05D007415 ORTHO05D009324 1.7e-71 273.5 252 54.4
arahy.Tifrunner.gnm1.ann1.HL0ERI Arachis hypogaea HOM05D007415 ORTHO05D009324 6.4e-71 271.6 269 54.6
arahy.Tifrunner.gnm1.ann1.YL0UD8 Arachis hypogaea HOM05D007415 ORTHO05D009324 6.4e-71 271.6 269 54.3
MELO3C002194.2 Cucumis melo HOM05D007415 ORTHO05D009324 1.4e-70 270.4 239 56.1
Rhsim01G0246200 Rhododendron simsii HOM05D007415 ORTHO05D009324 1.4e-70 270.4 235 57.4
AUR62028622 Chenopodium quinoa HOM05D007415 ORTHO05D009324 1.9e-70 270.0 254 57.1
Nn4g24568 Nelumbo nucifera HOM05D007415 ORTHO05D009324 3.2e-70 269.2 235 57.0
Solyc09g018950.3 Solanum lycopersicum HOM05D007415 ORTHO05D009324 3.2e-70 269.2 233 56.2
CsaV3_1G007790 Cucumis sativus L. HOM05D007415 ORTHO05D009324 4.2e-70 268.9 241 56.0
CANSAT11G1932 Cannabis sativa HOM05D007415 ORTHO05D009324 9.3e-70 267.7 259 56.4
CAN.G15.19 Capsicum annuum HOM05D007415 ORTHO05D009324 1.0e-68 264.2 230 56.5
Sed0017664 Sechium edule HOM05D007415 ORTHO05D009324 1.3e-68 263.8 243 56.0
ClCG01G014510 Citrullus lanatus HOM05D007415 ORTHO05D009324 5.1e-68 261.9 267 50.6
Gohir.A07G194700 Gossypium hirsutum HOM05D007415 ORTHO05D009324 6.7e-68 261.5 210 64.3
AUR62008047 Chenopodium quinoa HOM05D007415 ORTHO05D009324 1.1e-67 260.8 254 55.9
Aa31sc565G30 Aethionema arabicum HOM05D007415 ORTHO05D009324 7.4e-67 258.1 263 51.0
THA.LOC104808823 Tarenaya hassleriana HOM05D007415 ORTHO05D009324 1.6e-66 256.9 235 57.4
AL9U11890 Arabidopsis lyrata HOM05D007415 ORTHO05D009324 1.1e-65 254.2 250 52.0
Lj1g0001063 Lotus japonicus HOM05D007415 ORTHO05D009324 1.1e-65 254.2 265 51.7
PSO675G4429 Papaver somniferum HOM05D007415 ORTHO05D009324 1.4e-65 253.8 244 54.9
Sp7g09150 Schrenkiella parvula HOM05D007415 ORTHO05D009324 2.4e-65 253.1 263 52.1
Carub.0007s3006 Capsella rubella HOM05D007415 ORTHO05D009324 4.0e-65 252.3 260 51.5
AT4G12760 Arabidopsis thaliana HOM05D007415 ORTHO05D009324 5.3e-65 251.9 257 53.3
Thhalv10026014m.g Eutrema salsugineum HOM05D007415 ORTHO05D009324 1.0e-63 247.7 259 50.6
SalBow6G5534 Salvia bowleyana HOM05D007415 ORTHO05D009324 1.3e-63 247.3 302 45.0
Psat5g001880 Pisum sativum HOM05D007415 ORTHO05D009324 3.8e-63 245.7 247 53.0
Nitab4.5_0010771g0010 Nicotiana tabacum HOM05D007415 ORTHO05D009324 6.5e-63 245.0 252 52.0
CARHR218100 Cardamine hirsuta HOM05D007415 ORTHO05D009324 1.4e-62 243.8 267 51.3
unitig_61.g26009 Utricularia gibba HOM05D007415 ORTHO05D009324 3.2e-62 242.7 235 51.5
QL03p044140 Quercus lobata HOM05D007415 ORTHO05D009324 1.2e-61 240.7 224 54.9
DCAR_012712 Daucus carota HOM05D006570 ORTHO05D008193 2.7e-61 239.6 238 51.7
BcaB04g17744 Brassica carinata HOM05D007415 ORTHO05D009324 1.0e-60 237.7 259 48.3
VMungo1309G2266 Vigna mungo HOM05D007415 ORTHO05D009324 2.3e-60 236.5 244 50.4
GSVIVG01038257001 Vitis vinifera HOM05D007415 ORTHO05D009324 6.7e-60 235.0 232 50.0
C08p09070 Brassica napus HOM05D007415 ORTHO05D009324 1.1e-59 234.2 259 47.5
BolC8t47754H Brassica oleracea HOM05D007415 ORTHO05D009324 1.1e-59 234.2 259 47.5
Medtr3g118090 Medicago truncatula HOM05D007415 ORTHO05D009324 1.5e-59 233.8 250 49.6
Cpa.g.sc8.12 Carica papaya HOM05D007415 ORTHO05D009324 3.3e-59 232.6 212 58.0
BcaC07g37433 Brassica carinata HOM05D007415 ORTHO05D009324 4.3e-59 232.3 259 47.5
MBI10_g35389_MAGBIO Magnolia biondii HOM05D007415 ORTHO05D009324 5.7e-59 231.9 242 49.6
TWI36G0361 Tripterygium wilfordii HOM05D007415 ORTHO05D009324 7.4e-59 231.5 258 51.2
BraA08t32753Z Brassica rapa HOM05D007415 ORTHO05D009324 1.3e-58 230.7 262 46.2
Duzib133G1418 Durio zibethinus HOM05D007415 ORTHO05D009324 2.8e-58 229.6 199 59.8
Peaxi162Scf00424g00066 Petunia axillaris HOM05D007415 ORTHO05D009324 1.1e-57 227.6 204 54.4
SHI10204 Sapria himalayana HOM05D007415 ORTHO05D009324 1.8e-57 226.9 233 50.6
Glyma.04G002800 Glycine max HOM05D007415 ORTHO05D009324 1.5e-56 223.8 248 48.0
Aqoxy4G00006 Aquilegia oxysepala HOM05D007415 ORTHO05D009324 2.6e-56 223.0 244 47.1
CDE04G2941 Ceratophyllum demersum HOM05D007415 ORTHO05D009324 1.0e-55 221.1 254 49.2
A08p07370 Brassica napus HOM05D007415 ORTHO05D009324 1.3e-55 220.7 290 41.7
ECA247G1801 Erigeron canadensis HOM05D007415 ORTHO05D009324 5.5e-54 215.3 256 46.9
Os05g0417300 Oryza sativa ssp. japonica HOM05D007415 ORTHO05D009324 5.5e-54 215.3 257 42.8
Sabra14G0132700 Salix brachista HOM05D007415 ORTHO05D009324 1.2e-53 214.2 306 42.5
Lj1C108T7 Lonicera japonica HOM05D007415 ORTHO05D009324 5.7e-51 205.3 180 59.4
Lalb_Chr11g0061191 Lupinus albus HOM05D007415 ORTHO05D009324 1.3e-50 204.1 179 56.4
PSO732G0601 Papaver somniferum HOM05D007415 ORTHO05D009324 7.7e-48 194.9 247 44.9
Duzib138G0016 Durio zibethinus HOM05D007415 ORTHO05D009324 1.0e-44 184.5 246 43.1
PGSC0003DMG400020290 Solanum tuberosum HOM05D007415 ORTHO05D009324 1.7e-42 177.2 138 58.7
Phvul.009G118400 Phaseolus vulgaris HOM05D007415 ORTHO05D009324 4.8e-42 175.6 248 43.1
Glyma.06G002800 Glycine max HOM05D007415 ORTHO05D009324 1.1e-41 174.5 207 45.9
ATR0743G053 Amborella trichopoda HOM05D007415 ORTHO05D009324 9.1e-41 171.4 234 41.0
Ah.11g050670 Amaranthus hybridus HOM05D007415 ORTHO05D009324 2.8e-34 149.8 218 43.1
HPP92_001921 Vanilla planifolia HOM05D007415 ORTHO05D009324 3.4e-27 126.3 160 48.1
TPR.G38565 Trifolium pratense HOM05D007415 ORTHO05D009324 9.7e-27 124.8 262 34.4
Ca_15292_v3 Cicer arietinum L. HOM05D007415 ORTHO05D009324 2.2e-26 123.6 153 44.4
Mapoly0134s0003 Marchantia polymorpha HOM05D007415 ORTHO05D009324 3.7e-26 122.9 246 33.3
Pp3c1_28310 Physcomitrium patens HOM05D007415 ORTHO05D009324 8.3e-26 121.7 201 32.8
Haze_04514 Corylus avellana HOM05D007415 ORTHO05D009324 3.1e-25 119.8 147 47.6
SalBow2G2324 Salvia bowleyana HOM05D007415 ORTHO05D009324 4.0e-20 102.8 262 29.8
AagrBONN_evm.TU.Sc2ySwM_362.2902 Anthoceros agrestis HOM05D007415 ORTHO05D009324 8.8e-20 101.7 167 35.9
DCAR_017283 Daucus carota HOM05D007415 ORTHO05D009324 9.1e-17 91.7 130 38.5
SMO356G0522 Selaginella moellendorffii HOM05D007415 ORTHO05D009324 2.7e-16 90.1 240 29.6
Zm00001eb288240 Zea mays HOM05D007415 ORTHO05D009324 8.6e-15 85.1 114 43.9
PGSC0003DMG400007530 Solanum tuberosum HOM05D007415 ORTHO05D009324 5.2e-12 75.9 74 50.0


User provided reference genes

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