Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 6.6e-108 394.0 198 100.0
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 8.4e-63 244.2 208 68.3
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 7.1e-62 241.1 208 67.8
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 4.6e-61 238.4 215 67.0
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.8e-60 236.5 199 67.8
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 3.0e-60 235.7 211 66.4
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 9.6e-59 230.7 207 66.7
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 1.6e-53 213.4 210 57.1
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 2.7e-53 212.6 206 52.4
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 1.3e-52 210.3 209 51.7
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 3.0e-52 209.1 223 50.7
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 3.9e-52 208.8 206 51.5
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 5.1e-52 208.4 214 50.5
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 5.7e-51 204.9 212 56.1
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.3e-50 203.8 214 50.9
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 2.2e-50 203.0 212 55.7
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 1.1e-49 200.7 223 52.5
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 1.8e-49 199.9 213 57.7
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 2.4e-49 199.5 212 55.7
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 6.9e-49 198.0 209 56.0
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 9.0e-49 197.6 210 56.7
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 9.0e-49 197.6 211 54.5
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 1.5e-48 196.8 206 55.8
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 1.5e-48 196.8 202 56.4
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 2.0e-48 196.4 218 53.7
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 2.6e-48 196.1 220 51.8
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 3.4e-48 195.7 209 55.0
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 2.9e-47 192.6 220 53.6
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 3.8e-47 192.2 218 53.7
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 5.0e-47 191.8 212 55.2
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 5.0e-47 191.8 215 54.9
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 8.5e-47 191.0 213 54.0
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 1.4e-46 190.3 216 54.2
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 1.9e-46 189.9 216 52.3
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 3.2e-46 189.1 201 55.7
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 3.2e-46 189.1 200 55.0
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 4.2e-46 188.7 213 56.8
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 5.5e-46 188.3 213 56.8
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 7.2e-46 188.0 218 53.7
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 1.2e-45 187.2 215 55.8
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 1.6e-45 186.8 221 54.3
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 1.6e-45 186.8 201 55.2
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 2.1e-45 186.4 216 55.1
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 3.6e-45 185.7 216 53.7
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 4.6e-45 185.3 210 55.2
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 6.1e-45 184.9 204 56.4
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 6.1e-45 184.9 201 54.7
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 6.1e-45 184.9 199 55.3
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 1.8e-44 183.3 218 54.6
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 2.3e-44 183.0 207 52.2
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 2.3e-44 183.0 221 51.1
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 3.9e-44 182.2 206 50.5
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 3.9e-44 182.2 206 50.5
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 3.9e-44 182.2 203 52.7
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 5.1e-44 181.8 221 50.2
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 7.4e-43 177.9 207 52.2
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 2.8e-42 176.0 209 53.1
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 2.8e-42 176.0 220 50.5
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 2.8e-42 176.0 203 53.7
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 2.8e-42 176.0 216 52.3
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 2.8e-42 176.0 211 53.1
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 6.3e-42 174.9 206 54.9
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 8.2e-42 174.5 212 52.8
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 1.8e-41 173.3 214 49.1
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 1.8e-41 173.3 214 49.5
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 1.8e-41 173.3 179 54.7
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.8e-41 173.3 207 50.7
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 4.1e-41 172.2 212 51.9
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 9.1e-41 171.0 208 53.4
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.2e-40 170.6 207 49.8
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 2.6e-40 169.5 202 53.5
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 3.4e-40 169.1 214 50.9
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 3.4e-40 169.1 210 51.0
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 3.4e-40 169.1 202 49.0
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 4.5e-40 168.7 213 51.2
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 4.5e-40 168.7 220 49.5
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 5.9e-40 168.3 210 52.4
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 5.9e-40 168.3 203 50.7
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 1.0e-39 167.5 217 49.3
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 2.2e-39 166.4 214 48.6
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 2.2e-39 166.4 214 48.6
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 3.8e-39 165.6 208 47.1
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 5.0e-39 165.2 204 51.0
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 5.0e-39 165.2 209 48.8
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 6.5e-39 164.9 209 53.1
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 8.5e-39 164.5 211 48.8
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 1.9e-38 163.3 205 49.3
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 2.5e-38 162.9 214 48.6
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 4.2e-38 162.2 200 51.0
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 4.2e-38 162.2 203 48.3
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 7.2e-38 161.4 206 51.5
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 9.4e-38 161.0 180 53.3
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.2e-37 160.6 201 51.2
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.7e-37 159.5 200 49.5
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 3.6e-37 159.1 206 47.6
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 3.6e-37 159.1 190 51.6
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 4.7e-37 158.7 205 49.3
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 6.1e-37 158.3 214 46.7
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 7.9e-37 157.9 210 48.6
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 7.9e-37 157.9 226 47.8
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.0e-36 157.5 207 48.3
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 2.3e-36 156.4 209 49.8
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 3.9e-36 155.6 202 49.5
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 5.1e-36 155.2 208 48.6
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 8.8e-36 154.5 202 47.0
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 1.1e-35 154.1 213 46.5
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 2.0e-35 153.3 212 48.6
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 4.4e-35 152.1 210 45.7
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 1.3e-34 150.6 207 46.9
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 1.3e-34 150.6 191 48.2
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 2.2e-34 149.8 179 51.4
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 2.8e-34 149.4 202 47.5
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 4.8e-34 148.7 206 45.6
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 4.8e-34 148.7 210 46.7
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 6.3e-34 148.3 213 45.1
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 1.1e-33 147.5 206 45.6
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 1.4e-33 147.1 206 46.1
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 1.8e-33 146.7 207 44.4
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 3.1e-33 146.0 221 45.2
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 9.1e-33 144.4 214 44.4
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 1.6e-32 143.7 210 46.2
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 5.9e-32 141.7 240 41.7
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 5.9e-32 141.7 171 50.3
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 2.2e-31 139.8 205 44.9
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 2.2e-31 139.8 219 44.7
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 2.9e-31 139.4 197 44.7
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 3.8e-31 139.0 231 44.2
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 3.2e-30 136.0 241 40.7
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 6.1e-29 131.7 219 46.6
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 3.0e-28 129.4 202 44.6
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 3.0e-28 129.4 202 44.6
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 1.5e-27 127.1 194 45.4
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 2.6e-27 126.3 194 45.4
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 2.6e-27 126.3 198 43.9
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 3.3e-27 125.9 201 45.3
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 9.7e-27 124.4 219 43.4
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 4.8e-26 122.1 210 40.5
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 1.1e-25 120.9 180 45.6
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 1.8e-25 120.2 208 44.2
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 3.1e-25 119.4 298 31.9
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 4.1e-25 119.0 196 42.3
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 5.3e-25 118.6 209 40.7
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 3.5e-24 115.9 188 44.7
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 1.2e-21 107.5 143 45.5
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.6e-21 107.1 204 40.7
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 1.6e-21 107.1 204 42.6
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 1.6e-21 107.1 169 42.6
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 2.1e-21 106.7 206 42.2
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 2.3e-20 103.2 279 32.3
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 2.3e-20 103.2 206 41.3
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 6.8e-20 101.7 169 43.2
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 1.3e-18 97.4 172 42.4
Gorai.009G456000 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.8e-17 93.6 128 50.8
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 1.8e-17 93.6 156 39.7
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 1.2e-16 90.9 201 38.8
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 2.0e-16 90.1 188 38.3
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 3.5e-16 89.4 188 38.3
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 1.1e-14 84.3 87 52.9
Nn4g22231 Nelumbo nucifera HOM05D004016 ORTHO05D004732 2.5e-14 83.2 68 60.3
VMungo1383G2032 Vigna mungo HOM05D004016 ORTHO05D004732 2.1e-13 80.1 63 66.7
GSVIVG01001172001 Vitis vinifera HOM05D004016 ORTHO05D004732 5.7e-11 72.0 65 61.5
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 9.8e-11 71.2 105 43.8
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 8.3e-10 68.2 83 48.2
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 9.2e-09 64.7 48 58.3
Mapoly0128s0012 Marchantia polymorpha HOM05D004016 ORTHO05D004732 1.7e-07 60.5 98 43.9
VMungo0540G2292 Vigna mungo HOM05D004016 ORTHO05D004732 2.3e-07 60.1 48 62.5
SMO134G0037 Selaginella moellendorffii HOM05D004016 ORTHO05D004732 2.9e-07 59.7 115 40.0
SEGI_04941 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 1.1e-06 57.8 152 35.5


User provided reference genes

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