Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0001380 Simmondsia chinensis HOM05D005667 ORTHO05D007299 3.7e-179 631.3 301 100.0
Sc05g0004030 Simmondsia chinensis HOM05D005667 ORTHO05D007299 2.6e-172 608.6 301 96.3
Hund18138 Selenicereus undatus HOM05D005667 ORTHO05D007299 4.9e-131 471.5 302 72.2
Ah.08g213150 Amaranthus hybridus HOM05D005667 ORTHO05D007299 9.6e-127 457.2 307 69.7
CANSAT25G0856 Cannabis sativa HOM05D005667 ORTHO05D007299 5.8e-124 448.0 303 68.0
QL12p027280 Quercus lobata HOM05D005667 ORTHO05D007299 2.9e-123 445.7 302 67.9
Dinv33042 Davidia involucrata HOM05D005667 ORTHO05D007299 2.7e-121 439.1 302 68.9
Atru.chr5.1169 Acer truncatum HOM05D005667 ORTHO05D007299 1.0e-120 437.2 301 68.1
MD03G1286100 Malus domestica HOM05D005667 ORTHO05D007299 6.7e-120 434.5 301 67.8
TAR627G0762 Trochodendron aralioides HOM05D005667 ORTHO05D007299 3.3e-119 432.2 302 67.9
Cfa005935 Carpinus fangiana HOM05D005667 ORTHO05D007299 5.7e-119 431.4 301 66.1
vmacro14998 Vaccinium macrocarpon HOM05D005667 ORTHO05D007299 5.7e-119 431.4 306 66.7
DCAR_005798 Daucus carota HOM05D005667 ORTHO05D007299 9.7e-119 430.6 300 65.3
Actinidia32226 Actinidia chinensis HOM05D005667 ORTHO05D007299 2.2e-118 429.5 301 67.1
Prupe.8G259400 Prunus persica HOM05D005667 ORTHO05D007299 6.3e-118 427.9 304 65.8
TAR365G0445 Trochodendron aralioides HOM05D005667 ORTHO05D007299 6.3e-118 427.9 302 67.5
MD11G1306000 Malus domestica HOM05D005667 ORTHO05D007299 6.9e-117 424.5 301 66.1
MELO3C017966.2 Cucumis melo HOM05D005667 ORTHO05D007299 2.6e-116 422.5 301 63.8
VMungo1383G3519 Vigna mungo HOM05D005667 ORTHO05D007299 2.6e-116 422.5 300 63.7
Glyma.03G213700 Glycine max HOM05D005667 ORTHO05D007299 3.4e-116 422.2 303 64.7
arahy.Tifrunner.gnm1.ann1.AQSE8X Arachis hypogaea HOM05D005667 ORTHO05D007299 7.6e-116 421.0 305 63.3
Nn4g25820 Nelumbo nucifera HOM05D005667 ORTHO05D007299 7.6e-116 421.0 301 65.8
Phvul.001G206300 Phaseolus vulgaris HOM05D005667 ORTHO05D007299 1.0e-115 420.6 301 64.1
THA.LOC104817511 Tarenaya hassleriana HOM05D005667 ORTHO05D007299 1.0e-115 420.6 301 66.4
arahy.Tifrunner.gnm1.ann1.P0XQ2X Arachis hypogaea HOM05D005667 ORTHO05D007299 1.3e-115 420.2 305 63.0
CsaV3_4G000700 Cucumis sativus L. HOM05D005667 ORTHO05D007299 1.3e-115 420.2 301 63.5
Ca_09151_v3 Cicer arietinum L. HOM05D005667 ORTHO05D007299 2.2e-115 419.5 308 63.3
AUR62008656 Chenopodium quinoa HOM05D005667 ORTHO05D007299 3.8e-115 418.7 300 65.3
Glyma.19G210500 Glycine max HOM05D005667 ORTHO05D007299 3.8e-115 418.7 303 63.4
HanXRQChr04g0118041 Helianthus annuus HOM05D005667 ORTHO05D007299 6.5e-115 417.9 300 63.7
Lj1g0013419 Lotus japonicus HOM05D005667 ORTHO05D007299 6.5e-115 417.9 306 63.1
QL12p026655 Quercus lobata HOM05D005667 ORTHO05D007299 6.5e-115 417.9 302 65.2
Lalb_Chr04g0259821 Lupinus albus HOM05D005667 ORTHO05D007299 1.9e-114 416.4 305 63.6
Psat3g021960 Pisum sativum HOM05D005667 ORTHO05D007299 1.9e-114 416.4 309 63.8
Sed0014922 Sechium edule HOM05D005667 ORTHO05D007299 2.5e-114 416.0 301 62.5
Haze_04910 Corylus avellana HOM05D005667 ORTHO05D007299 5.5e-114 414.8 332 60.5
TPR.G9636 Trifolium pratense HOM05D005667 ORTHO05D007299 9.3e-114 414.1 306 62.7
FvH4_2g25530 Fragaria vesca HOM05D005667 ORTHO05D007299 1.6e-113 413.3 302 65.2
Ciclev10020175m.g Citrus clementina HOM05D005667 ORTHO05D007299 2.7e-113 412.5 301 64.1
Hma1.2p1_0209F.1_g088490 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 2.7e-113 412.5 301 65.4
AUR62033112 Chenopodium quinoa HOM05D005667 ORTHO05D007299 3.6e-113 412.1 301 65.8
Medtr7g108870 Medicago truncatula HOM05D005667 ORTHO05D007299 3.6e-113 412.1 301 64.8
Medtr8g058590 Medicago truncatula HOM05D005667 ORTHO05D007299 3.6e-113 412.1 301 64.8
EL10Ac7g17451 Beta vulgaris HOM05D005667 ORTHO05D007299 4.6e-113 411.8 300 66.0
Lalb_Chr18g0047071 Lupinus albus HOM05D005667 ORTHO05D007299 4.6e-113 411.8 305 63.3
TWI23G0451 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 1.8e-112 409.8 301 63.5
Solyc09g075000.3 Solanum lycopersicum HOM05D005667 ORTHO05D007299 6.7e-112 407.9 302 64.2
Nitab4.5_0002469g0040 Nicotiana tabacum HOM05D005667 ORTHO05D007299 1.5e-111 406.8 300 64.0
Peaxi162Scf00001g00492 Petunia axillaris HOM05D005667 ORTHO05D007299 1.5e-111 406.8 301 64.1
Sopen09g029820 Solanum pennellii HOM05D005667 ORTHO05D007299 3.3e-111 405.6 300 64.7
TWI59G1070 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 1.7e-110 403.3 305 63.3
AL4G47370 Arabidopsis lyrata HOM05D005667 ORTHO05D007299 2.2e-110 402.9 302 63.9
AT2G47790 Arabidopsis thaliana HOM05D005667 ORTHO05D007299 4.8e-110 401.7 302 63.2
Sp4g29720 Schrenkiella parvula HOM05D005667 ORTHO05D007299 4.8e-110 401.7 302 63.9
PGSC0003DMG400011397 Solanum tuberosum HOM05D005667 ORTHO05D007299 1.1e-109 400.6 302 64.2
FAN20G0834 Fragaria x ananassa HOM05D005667 ORTHO05D007299 4.1e-109 398.7 302 63.2
Lsat_1_v5_gn_8_53441 Lactuca sativa HOM05D005667 ORTHO05D007299 1.5e-108 396.7 305 62.0
CiPaw.07G107100 Carya illinoinensis HOM05D005667 ORTHO05D007299 4.5e-108 395.2 302 61.3
SGA_v2.0_scaffold2G01401 Striga asiatica HOM05D005667 ORTHO05D007299 7.7e-108 394.4 302 61.9
Carub.0004s3050 Capsella rubella HOM05D005667 ORTHO05D007299 1.3e-107 393.7 302 63.6
Aqoxy2G02973 Aquilegia oxysepala HOM05D005667 ORTHO05D007299 5.0e-107 391.7 305 62.0
CDE08G0318 Ceratophyllum demersum HOM05D005667 ORTHO05D007299 1.9e-106 389.8 297 62.3
GSVIVG01027987001 Vitis vinifera HOM05D005667 ORTHO05D007299 3.2e-106 389.0 254 70.1
ATR0796G332 Amborella trichopoda HOM05D005667 ORTHO05D007299 1.4e-104 383.6 302 60.3
Sabra02G0153700 Salix brachista HOM05D005667 ORTHO05D007299 1.4e-104 383.6 303 62.4
Cc01_g20730 Coffea canephora HOM05D005667 ORTHO05D007299 5.1e-104 381.7 354 54.5
PSO210G4429 Papaver somniferum HOM05D005667 ORTHO05D007299 8.8e-104 380.9 302 61.9
Eucgr.K03468 Eucalyptus grandis HOM05D005667 ORTHO05D007299 1.5e-103 380.2 302 61.3
Potri.002G205600 Populus trichocarpa HOM05D005667 ORTHO05D007299 2.0e-103 379.8 302 61.9
Thecc.01G298400 Theobroma cacao HOM05D005667 ORTHO05D007299 2.6e-103 379.4 301 60.1
Hma1.2p1_0209F.1_g088500 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 3.3e-103 379.0 388 51.5
CSS0019258 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 4.4e-103 378.6 302 61.3
COL.COLO4_23365 Corchorus olitorius HOM05D005667 ORTHO05D007299 4.4e-103 378.6 301 61.1
CARHR143160 Cardamine hirsuta HOM05D005667 ORTHO05D007299 7.4e-103 377.9 302 61.9
Duzib138G1280 Durio zibethinus HOM05D005667 ORTHO05D007299 1.3e-102 377.1 302 59.9
Actinidia24829 Actinidia chinensis HOM05D005667 ORTHO05D007299 4.8e-102 375.2 262 66.0
Thhalv10001494m.g Eutrema salsugineum HOM05D005667 ORTHO05D007299 4.8e-102 375.2 301 61.5
Migut.D00204 Erythranthe guttata HOM05D005667 ORTHO05D007299 1.8e-101 373.2 303 59.7
Manes.01G217700 Manihot esculenta HOM05D005667 ORTHO05D007299 2.4e-101 372.9 302 60.6
PSO170G6061 Papaver somniferum HOM05D005667 ORTHO05D007299 9.1e-101 370.9 302 60.6
SalBow3G0511 Salvia bowleyana HOM05D005667 ORTHO05D007299 4.5e-100 368.6 300 59.0
Nitab4.5_0005515g0060 Nicotiana tabacum HOM05D005667 ORTHO05D007299 1.0e-99 367.5 300 60.0
MSTRG.21625 Avicennia marina HOM05D005667 ORTHO05D007299 1.7e-99 366.7 301 58.8
Lj1C26T7 Lonicera japonica HOM05D005667 ORTHO05D007299 5.0e-99 365.2 246 67.9
Aa31LG1G29130 Aethionema arabicum HOM05D005667 ORTHO05D007299 4.2e-98 362.1 299 58.9
Potri.014G130600 Populus trichocarpa HOM05D005667 ORTHO05D007299 9.4e-98 360.9 303 59.4
ECA236G1571 Erigeron canadensis HOM05D005667 ORTHO05D007299 2.1e-97 359.8 300 57.3
HPP92_027132 Vanilla planifolia HOM05D005667 ORTHO05D007299 2.7e-97 359.4 302 58.9
ClCG10G010830 Citrullus lanatus HOM05D005667 ORTHO05D007299 2.6e-95 352.8 301 56.5
A04p35070 Brassica napus HOM05D005667 ORTHO05D007299 3.3e-95 352.4 304 57.6
SHI15190 Sapria himalayana HOM05D005667 ORTHO05D007299 5.7e-95 351.7 306 55.9
BcaB06g29498 Brassica carinata HOM05D005667 ORTHO05D007299 1.3e-94 350.5 327 53.8
C04p72980 Brassica napus HOM05D005667 ORTHO05D007299 1.3e-94 350.5 304 58.2
SEGI_23788 Sequoiadendron giganteum HOM05D005667 ORTHO05D007299 3.7e-94 349.0 312 56.4
BolC4t28779H Brassica oleracea HOM05D005667 ORTHO05D007299 1.1e-93 347.4 304 56.9
BraA04t18943Z Brassica rapa HOM05D005667 ORTHO05D007299 1.1e-93 347.4 305 56.7
PGR044G1684 Punica granatum HOM05D005667 ORTHO05D007299 1.8e-93 346.7 304 56.9
unitig_0.g1174 Utricularia gibba HOM05D005667 ORTHO05D007299 2.6e-92 342.8 303 55.4
BcaC02g06992 Brassica carinata HOM05D005667 ORTHO05D007299 7.7e-92 341.3 302 55.0
Sabra14G0097200 Salix brachista HOM05D005667 ORTHO05D007299 1.3e-91 340.5 303 56.8
Rhsim01G0284200 Rhododendron simsii HOM05D005667 ORTHO05D007299 1.2e-89 334.0 311 55.3
Gohir.D12G135100 Gossypium hirsutum HOM05D005667 ORTHO05D007299 8.0e-89 331.3 303 55.4
Gohir.A12G131200 Gossypium hirsutum HOM05D005667 ORTHO05D007299 2.0e-87 326.6 303 55.1
Gorai.008G146100 Gossypium raimondii HOM05D005667 ORTHO05D007299 6.3e-86 321.6 302 55.0
CSS0024566 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 9.1e-85 317.8 301 52.8
CSS0050073 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 1.0e-83 314.3 301 52.5
BcaB06g29495 Brassica carinata HOM05D005667 ORTHO05D007299 2.2e-78 296.6 278 54.0
RcHm_v2.0_Chr6g0293741 Rosa chinensis HOM05D005667 ORTHO05D007299 1.3e-70 270.8 200 63.5
Pp3c11_15090 Physcomitrium patens HOM05D005667 ORTHO05D007299 4.9e-70 268.9 298 48.0
Mapoly0153s0027 Marchantia polymorpha HOM05D005667 ORTHO05D007299 5.4e-69 265.4 307 43.3
SMO329G0065 Selaginella moellendorffii HOM05D005667 ORTHO05D007299 1.2e-68 264.2 307 46.3
Cpa.g.sc9.222 Carica papaya HOM05D005667 ORTHO05D007299 2.7e-68 263.1 185 66.5
Pp3c11_14960 Physcomitrium patens HOM05D005667 ORTHO05D007299 5.6e-66 255.4 309 46.0
Pp3c2_26100 Physcomitrium patens HOM05D005667 ORTHO05D007299 6.1e-65 251.9 310 43.9
Dinv19706 Davidia involucrata HOM05D005667 ORTHO05D007299 5.8e-63 245.4 179 65.4
Medtr8g058557 Medicago truncatula HOM05D005667 ORTHO05D007299 7.0e-61 238.4 149 73.2
Zm00001eb157470 Zea mays HOM05D005667 ORTHO05D007299 3.7e-54 216.1 149 67.1
HPP92_021590 Vanilla planifolia HOM05D005667 ORTHO05D007299 4.1e-53 212.6 158 64.6
Actinidia21054 Actinidia chinensis HOM05D005667 ORTHO05D007299 2.0e-47 193.7 153 57.5
AagrBONN_evm.TU.Sc2ySwM_344.2785 Anthoceros agrestis HOM05D005667 ORTHO05D007299 3.3e-42 176.4 179 46.4
Cre03.g178050 Chlamydomonas reinhardtii HOM05D005667 ORTHO05D007299 4.4e-39 166.0 294 35.4
MCO09G319 Micromonas commoda HOM05D005667 ORTHO05D007299 4.9e-30 136.0 301 33.9
PRCOL_00003266 Prasinoderma coloniale HOM05D005667 ORTHO05D007299 4.9e-30 136.0 303 32.7
Nn3g21456 Nelumbo nucifera HOM05D005667 ORTHO05D007299 3.3e-26 123.2 233 34.8
Oeu011452.2 Olea europaea HOM05D005667 ORTHO05D007299 2.4e-24 117.1 83 63.9
Os12g0294100 Oryza sativa ssp. japonica HOM05D005667 ORTHO05D007299 2.4e-21 107.1 120 47.5
Migut.G00109 Erythranthe guttata HOM05D005667 ORTHO05D007299 6.0e-20 102.4 171 35.7
Migut.D00125 Erythranthe guttata HOM05D005667 ORTHO05D007299 8.7e-19 98.6 81 54.3
CBR_g34279 Chara braunii HOM05D005667 ORTHO05D007299 8.4e-14 82.0 80 51.2
CBR_g31107 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-11 73.9 137 32.1
CBR_g31109 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-11 73.9 69 46.4
Actinidia13473 Actinidia chinensis HOM05D005667 ORTHO05D000474 1.0e-06 58.5 70 44.3
BcaC02g06993 Brassica carinata HOM05D005667 ORTHO05D007299 2.9e-06 57.0 38 60.5


User provided reference genes

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