Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0001300 Simmondsia chinensis HOM05D004978 ORTHO05D005621 1.8e-99 365.9 186 100.0
GSVIVG01003120001 Vitis vinifera HOM05D004978 ORTHO05D005621 9.7e-61 237.3 178 67.4
Dinv32884 Davidia involucrata HOM05D004978 ORTHO05D005621 9.4e-56 220.7 181 64.1
Manes.05G081900 Manihot esculenta HOM05D004978 ORTHO05D005621 3.6e-55 218.8 177 63.3
QL01p000805 Quercus lobata HOM05D004978 ORTHO05D005621 1.5e-53 213.4 177 63.8
Nn1g02459 Nelumbo nucifera HOM05D004978 ORTHO05D005621 2.8e-52 209.1 176 60.2
Cfa006202 Carpinus fangiana HOM05D004978 ORTHO05D005621 6.3e-52 208.0 172 64.0
CiPaw.07G086800 Carya illinoinensis HOM05D004978 ORTHO05D005621 8.2e-52 207.6 172 64.0
Gohir.D08G072400 Gossypium hirsutum HOM05D004978 ORTHO05D005621 1.1e-51 207.2 175 61.7
Gorai.004G076600 Gossypium raimondii HOM05D004978 ORTHO05D005621 1.1e-51 207.2 175 61.7
Atru.chr5.1521 Acer truncatum HOM05D004978 ORTHO05D005621 2.4e-51 206.1 172 60.5
Potri.005G215200 Populus trichocarpa HOM05D004978 ORTHO05D005621 2.4e-51 206.1 180 59.4
Gohir.A08G063900 Gossypium hirsutum HOM05D004978 ORTHO05D005621 5.3e-51 204.9 175 61.1
TWI75G1276 Tripterygium wilfordii HOM05D004978 ORTHO05D005621 1.5e-50 203.4 177 58.2
Thecc.01G271500 Theobroma cacao HOM05D004978 ORTHO05D005621 2.6e-50 202.6 170 62.4
AUR62011971 Chenopodium quinoa HOM05D004978 ORTHO05D005621 3.5e-50 202.2 210 52.9
AUR62032283 Chenopodium quinoa HOM05D004978 ORTHO05D005621 1.0e-49 200.7 205 54.1
DCAR_002701 Daucus carota HOM05D004978 ORTHO05D005621 8.5e-49 197.6 175 56.6
CANSAT25G0263 Cannabis sativa HOM05D004978 ORTHO05D005621 1.1e-48 197.2 176 60.8
PGR044G1133 Punica granatum HOM05D004978 ORTHO05D005621 1.1e-48 197.2 181 58.6
FvH4_2g22940 Fragaria vesca HOM05D004978 ORTHO05D005621 2.5e-48 196.1 178 57.3
Actinidia24924 Actinidia chinensis HOM05D004978 ORTHO05D005621 3.2e-48 195.7 174 59.8
FAN24G2655 Fragaria x ananassa HOM05D004978 ORTHO05D005621 4.2e-48 195.3 178 57.3
MD11G1278700 Malus domestica HOM05D004978 ORTHO05D005621 4.2e-48 195.3 171 60.8
QL12p042266 Quercus lobata HOM05D004978 ORTHO05D005621 4.2e-48 195.3 159 65.4
FAN27G2645 Fragaria x ananassa HOM05D004978 ORTHO05D005621 7.2e-48 194.5 178 56.7
FAN15G0608 Fragaria x ananassa HOM05D004978 ORTHO05D005621 9.4e-48 194.1 178 56.7
FAN20G1006 Fragaria x ananassa HOM05D004978 ORTHO05D005621 9.4e-48 194.1 178 56.7
Rhsim01G0272000 Rhododendron simsii HOM05D004978 ORTHO05D005621 9.4e-48 194.1 182 56.6
Glyma.10G029800 Glycine max HOM05D004978 ORTHO05D005621 1.2e-47 193.7 174 59.8
Aqoxy5G00398 Aquilegia oxysepala HOM05D004978 ORTHO05D005621 1.6e-47 193.4 177 58.2
Ciclev10019332m.g Citrus clementina HOM05D004978 ORTHO05D005621 2.1e-47 193.0 170 58.2
arahy.Tifrunner.gnm1.ann1.54WUVN Arachis hypogaea HOM05D004978 ORTHO05D005621 2.7e-47 192.6 168 60.1
MD03G1258100 Malus domestica HOM05D004978 ORTHO05D005621 6.1e-47 191.4 171 59.6
Haze_04642 Corylus avellana HOM05D004978 ORTHO05D005621 3.9e-46 188.7 154 64.9
Phvul.007G175000 Phaseolus vulgaris HOM05D004978 ORTHO05D005621 3.9e-46 188.7 174 57.5
HanXRQChr04g0113941 Helianthus annuus HOM05D004978 ORTHO05D005621 1.1e-45 187.2 165 57.6
CDE02G4319 Ceratophyllum demersum HOM05D004978 ORTHO05D005621 1.5e-45 186.8 165 57.0
Oeu014736.1 Olea europaea HOM05D004978 ORTHO05D005621 4.4e-45 185.3 170 58.2
Cc01_g19000 Coffea canephora HOM05D004978 ORTHO05D005621 5.7e-45 184.9 175 55.4
Lj5g0010127 Lotus japonicus HOM05D004978 ORTHO05D005621 5.7e-45 184.9 181 56.9
RcHm_v2.0_Chr6g0289911 Rosa chinensis HOM05D004978 ORTHO05D005621 5.7e-45 184.9 178 53.9
VMungo0720G1640 Vigna mungo HOM05D004978 ORTHO05D005621 5.7e-45 184.9 174 56.3
Migut.D00356 Erythranthe guttata HOM05D004978 ORTHO05D005621 9.7e-45 184.1 185 53.0
SGA_v2.0_scaffold1G00534 Striga asiatica HOM05D004978 ORTHO05D005621 1.3e-44 183.7 183 52.5
PSO210G1189 Papaver somniferum HOM05D004978 ORTHO05D005621 2.2e-44 183.0 175 56.0
PSO832G2480 Papaver somniferum HOM05D004978 ORTHO05D005621 2.2e-44 183.0 175 56.0
Sed0003895 Sechium edule HOM05D004978 ORTHO05D005621 2.2e-44 183.0 168 56.5
ClCG09G007410 Citrullus lanatus HOM05D004978 ORTHO05D005621 8.2e-44 181.0 176 56.8
Ah.11g050220 Amaranthus hybridus HOM05D004978 ORTHO05D005621 1.4e-43 180.3 211 49.8
Eucgr.K03324 Eucalyptus grandis HOM05D004978 ORTHO05D005621 1.4e-43 180.3 169 56.8
COL.COLO4_09187 Corchorus olitorius HOM05D004978 ORTHO05D005621 1.8e-43 179.9 160 57.5
Psat6g058480 Pisum sativum HOM05D004978 ORTHO05D005621 1.8e-43 179.9 177 55.4
TWI12G0244 Tripterygium wilfordii HOM05D004978 ORTHO05D005621 1.8e-43 179.9 180 53.9
Nitab4.5_0004115g0020 Nicotiana tabacum HOM05D004978 ORTHO05D005621 3.1e-43 179.1 177 51.4
ECA236G1829 Erigeron canadensis HOM05D004978 ORTHO05D005621 7.0e-43 177.9 165 55.8
Nitab4.5_0000459g0120 Nicotiana tabacum HOM05D004978 ORTHO05D005621 7.0e-43 177.9 177 50.8
Cpa.g.sc52.118 Carica papaya HOM05D004978 ORTHO05D005621 9.1e-43 177.6 159 56.6
CsaV3_7G027890 Cucumis sativus L. HOM05D004978 ORTHO05D005621 1.2e-42 177.2 168 57.7
Lj2A1164T58 Lonicera japonica HOM05D004978 ORTHO05D005621 2.0e-42 176.4 160 58.8
Lalb_Chr02g0142521 Lupinus albus HOM05D004978 ORTHO05D005621 2.6e-42 176.0 177 54.2
BcaB01g04828 Brassica carinata HOM05D004978 ORTHO05D005621 3.5e-42 175.6 173 54.3
Aa31LG9G14570 Aethionema arabicum HOM05D004978 ORTHO05D005621 7.7e-42 174.5 167 56.3
C03p11220 Brassica napus HOM05D004978 ORTHO05D005621 1.0e-41 174.1 173 53.8
BolC3t13593H Brassica oleracea HOM05D004978 ORTHO05D005621 1.0e-41 174.1 173 53.8
A03p09660 Brassica napus HOM05D004978 ORTHO05D005621 1.3e-41 173.7 167 55.1
Peaxi162Scf00259g00051 Petunia axillaris HOM05D004978 ORTHO05D005621 1.3e-41 173.7 181 51.9
arahy.Tifrunner.gnm1.ann1.ZM38TH Arachis hypogaea HOM05D004978 ORTHO05D005621 1.7e-41 173.3 153 60.1
CARHR193040 Cardamine hirsuta HOM05D004978 ORTHO05D005621 2.2e-41 172.9 173 55.5
PGSC0003DMG400019310 Solanum tuberosum HOM05D004978 ORTHO05D005621 6.5e-41 171.4 181 51.4
Zm00001eb370120 Zea mays HOM05D004978 ORTHO05D005621 6.5e-41 171.4 175 53.7
Lsat_1_v5_gn_8_93980 Lactuca sativa HOM05D004978 ORTHO05D005621 1.5e-40 170.2 153 57.5
Solyc09g065690.4 Solanum lycopersicum HOM05D004978 ORTHO05D005621 1.5e-40 170.2 181 50.8
BcaB01g04842 Brassica carinata HOM05D004978 ORTHO05D005621 1.9e-40 169.9 181 51.9
AL6G31360 Arabidopsis lyrata HOM05D004978 ORTHO05D005621 2.5e-40 169.5 173 54.9
Medtr1g071300 Medicago truncatula HOM05D004978 ORTHO05D005621 7.2e-40 167.9 169 53.8
Sopen09g027430 Solanum pennellii HOM05D004978 ORTHO05D005621 7.2e-40 167.9 181 49.7
AT5G19840 Arabidopsis thaliana HOM05D004978 ORTHO05D005621 9.4e-40 167.5 173 53.8
Carub.0006s1819 Capsella rubella HOM05D004978 ORTHO05D005621 1.2e-39 167.2 182 51.1
vmacro14887 Vaccinium macrocarpon HOM05D004978 ORTHO05D005621 2.7e-39 166.0 159 57.9
CAN.G433.6 Capsicum annuum HOM05D004978 ORTHO05D005621 1.8e-38 163.3 181 50.3
BraA03t10282Z Brassica rapa HOM05D004978 ORTHO05D005621 2.3e-38 162.9 184 50.0
HPP92_022057 Vanilla planifolia HOM05D004978 ORTHO05D005621 4.4e-37 158.7 165 50.9
ATR0665G047 Amborella trichopoda HOM05D004978 ORTHO05D005621 9.7e-37 157.5 174 50.6
Ca_09727_v3 Cicer arietinum L. HOM05D004978 ORTHO05D005621 9.7e-37 157.5 159 54.7
Sed0016751 Sechium edule HOM05D004978 ORTHO05D005621 9.7e-37 157.5 157 54.1
Hund09547 Selenicereus undatus HOM05D004978 ORTHO05D005621 2.8e-36 156.0 221 46.6
MELO3C015807.2 Cucumis melo HOM05D004978 ORTHO05D005621 7.0e-35 151.4 159 52.2
TAR636G2873 Trochodendron aralioides HOM05D004978 ORTHO05D005621 5.9e-34 148.3 93 79.6
unitig_0.g1132 Utricularia gibba HOM05D004978 ORTHO05D005621 7.7e-34 147.9 205 42.4
Thhalv10013262m.g Eutrema salsugineum HOM05D004978 ORTHO05D005621 1.5e-32 143.7 154 53.9
Sp6g24570 Schrenkiella parvula HOM05D004978 ORTHO05D005621 1.5e-32 143.7 160 51.2
Duzib133G0140 Durio zibethinus HOM05D004978 ORTHO05D005621 3.0e-30 136.0 92 72.8
Prupe.8G234700 Prunus persica HOM05D004978 ORTHO05D005621 8.8e-30 134.4 87 73.6
Glyma.02G144333 Glycine max HOM05D004978 ORTHO05D005621 2.7e-26 122.9 85 69.4
TPR.G34891 Trifolium pratense HOM05D004978 ORTHO05D005621 1.2e-21 107.5 73 71.2
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 2.8e-20 102.8 93 55.9
SMO367G0146 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 2.8e-20 102.8 93 54.8
SEGI_31795 Sequoiadendron giganteum HOM05D004978 ORTHO05D005621 1.1e-19 100.9 108 50.9
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 1.4e-19 100.5 93 53.8
Lalb_Chr06g0162781 Lupinus albus HOM05D004978 ORTHO05D005621 5.9e-18 95.1 65 67.7
Mapoly0003s0071 Marchantia polymorpha HOM05D004978 ORTHO05D005621 8.6e-17 91.3 177 30.5
Pp3c26_13750 Physcomitrium patens HOM05D004978 ORTHO05D005621 2.1e-15 86.7 174 35.1
AagrBONN_evm.TU.Sc2ySwM_117.2029 Anthoceros agrestis HOM05D004978 ORTHO05D005621 8.9e-14 81.3 104 40.4
CSS0039116 Camellia sinensis var. sinensis HOM05D004978 ORTHO05D005621 8.3e-12 74.7 90 46.7
QL05p031917 Quercus lobata HOM05D000015 ORTHO05D005621 1.2e-10 70.9 88 48.9
Potri.002G047875 Populus trichocarpa HOM05D004978 ORTHO05D005621 2.0e-10 70.1 90 44.4
MBI11_g08089_MAGBIO Magnolia biondii HOM05D004978 ORTHO05D005621 4.6e-10 68.9 84 48.8
TPR.G21665 Trifolium pratense HOM05D004978 ORTHO05D005621 3.6e-07 59.3 88 44.3
TPR.G21102 Trifolium pratense HOM05D004978 ORTHO05D005621 4.7e-07 58.9 90 43.3
CSS0038001 Camellia sinensis var. sinensis HOM05D004978 ORTHO05D005621 4.0e-06 55.8 52 57.7
Dinv22502 Davidia involucrata HOM05D004978 ORTHO05D005621 6.8e-06 55.1 135 35.6


User provided reference genes

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