Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0001200 Simmondsia chinensis HOM05D007386 ORTHO05D009210 1.8e-85 319.3 174 100.0
TWI18G1441 Tripterygium wilfordii HOM05D007386 ORTHO05D009210 6.5e-51 204.5 176 68.2
EL10Ac3g07280 Beta vulgaris HOM05D007386 ORTHO05D009210 3.2e-50 202.2 172 68.0
Manes.05G078600 Manihot esculenta HOM05D007386 ORTHO05D009210 3.6e-49 198.7 178 63.5
Actinidia00789 Actinidia chinensis HOM05D007386 ORTHO05D009210 5.2e-48 194.9 183 60.7
Duzib168G0678 Durio zibethinus HOM05D007386 ORTHO05D009210 1.1e-47 193.7 175 64.0
CSS0036584 Camellia sinensis var. sinensis HOM05D007386 ORTHO05D009210 1.5e-47 193.4 181 59.7
PGR044G1958 Punica granatum HOM05D007386 ORTHO05D009210 1.5e-47 193.4 176 63.1
Glyma.02G145500 Glycine max HOM05D007386 ORTHO05D009210 7.4e-47 191.0 175 64.0
CSS0002766 Camellia sinensis var. sinensis HOM05D007386 ORTHO05D009210 1.3e-46 190.3 174 60.9
TAR636G2514 Trochodendron aralioides HOM05D007386 ORTHO05D009210 2.2e-46 189.5 183 60.1
Phvul.007G173800 Phaseolus vulgaris HOM05D007386 ORTHO05D009210 4.8e-46 188.3 176 64.2
Nn6g34127 Nelumbo nucifera HOM05D007386 ORTHO05D009210 6.3e-46 188.0 180 63.3
SalBow4G1029 Salvia bowleyana HOM05D007386 ORTHO05D009210 1.4e-45 186.8 176 59.7
VMungo0720G1463 Vigna mungo HOM05D007386 ORTHO05D009210 1.4e-45 186.8 176 61.9
QL12p020752 Quercus lobata HOM05D007386 ORTHO05D009210 2.4e-45 186.0 177 61.0
Gohir.D08G093000 Gossypium hirsutum HOM05D007386 ORTHO05D009210 5.3e-45 184.9 177 61.0
Cfa006177 Carpinus fangiana HOM05D007386 ORTHO05D009210 1.2e-44 183.7 184 59.8
Rhsim13G0027600 Rhododendron simsii HOM05D007386 ORTHO05D009210 1.6e-44 183.3 185 57.8
GSVIVG01001191001 Vitis vinifera HOM05D007386 ORTHO05D009210 2.6e-44 182.6 170 61.8
Ah.04g150680 Amaranthus hybridus HOM05D007386 ORTHO05D009210 4.5e-44 181.8 172 62.2
Gorai.004G098600 Gossypium raimondii HOM05D007386 ORTHO05D009210 4.5e-44 181.8 177 60.5
Cpa.g.sc95.34 Carica papaya HOM05D007386 ORTHO05D009210 7.7e-44 181.0 177 61.6
AUR62018389 Chenopodium quinoa HOM05D000027 ORTHO05D000066 1.0e-43 180.6 172 62.2
Oeu059791.1 Olea europaea HOM05D007386 ORTHO05D009210 3.8e-43 178.7 180 58.9
HanXRQChr10g0282251 Helianthus annuus HOM05D007386 ORTHO05D009210 8.5e-43 177.6 176 60.2
Medtr1g071630 Medicago truncatula HOM05D007386 ORTHO05D009210 8.5e-43 177.6 175 60.6
CiPaw.07G088700 Carya illinoinensis HOM05D007386 ORTHO05D009210 1.1e-42 177.2 183 58.5
AUR62030273 Chenopodium quinoa HOM05D007386 ORTHO05D009210 1.5e-42 176.8 172 60.5
Lalb_Chr06g0162851 Lupinus albus HOM05D007386 ORTHO05D009210 5.5e-42 174.9 175 60.0
vmacro02599 Vaccinium macrocarpon HOM05D007386 ORTHO05D009210 1.2e-41 173.7 186 56.5
arahy.Tifrunner.gnm1.ann1.ZF8TUR Arachis hypogaea HOM05D007386 ORTHO05D009210 1.6e-41 173.3 176 60.2
TPR.G25681 Trifolium pratense HOM05D007386 ORTHO05D009210 6.1e-41 171.4 178 58.4
Eucgr.K03341 Eucalyptus grandis HOM05D007386 ORTHO05D009210 1.0e-40 170.6 177 57.6
arahy.Tifrunner.gnm1.ann1.JNW8E7 Arachis hypogaea HOM05D007386 ORTHO05D009210 1.4e-40 170.2 176 59.7
ECA247G1531 Erigeron canadensis HOM05D007386 ORTHO05D009210 2.3e-40 169.5 183 57.4
Glyma.10G028600 Glycine max HOM05D007386 ORTHO05D009210 3.0e-40 169.1 175 60.6
DCAR_018437 Daucus carota HOM05D007386 ORTHO05D009210 8.8e-40 167.5 176 58.5
Gohir.A08G081100 Gossypium hirsutum HOM05D007386 ORTHO05D009210 1.2e-39 167.2 174 56.9
Sabra05G0162700 Salix brachista HOM05D007386 ORTHO05D009210 1.5e-39 166.8 174 56.9
MSTRG.21545 Avicennia marina HOM05D007386 ORTHO05D009210 2.0e-39 166.4 181 59.1
COL.COLO4_25451 Corchorus olitorius HOM05D007386 ORTHO05D009210 5.7e-39 164.9 174 56.9
ClCG09G007290 Citrullus lanatus HOM05D007386 ORTHO05D009210 1.7e-38 163.3 182 56.6
Potri.005G213000 Populus trichocarpa HOM05D007386 ORTHO05D009210 1.7e-38 163.3 174 55.7
CANSAT78G1636 Cannabis sativa HOM05D007386 ORTHO05D009210 2.2e-38 162.9 184 54.9
Thecc.09G179900 Theobroma cacao HOM05D007386 ORTHO05D009210 4.8e-38 161.8 174 56.3
Prupe.8G236700 Prunus persica HOM05D007386 ORTHO05D009210 6.3e-38 161.4 187 55.1
Ca_09739_v3 Cicer arietinum L. HOM05D007386 ORTHO05D009210 8.2e-38 161.0 175 54.3
Haze_04670 Corylus avellana HOM05D007386 ORTHO05D009210 1.8e-37 159.8 147 60.5
Psat6g059880 Pisum sativum HOM05D007386 ORTHO05D009210 4.1e-37 158.7 122 68.9
CDE06G2441 Ceratophyllum demersum HOM05D007386 ORTHO05D009210 1.2e-36 157.1 185 54.1
MELO3C015793.2 Cucumis melo HOM05D007386 ORTHO05D009210 5.9e-36 154.8 191 53.9
MBI11_g22999_MAGBIO Magnolia biondii HOM05D007386 ORTHO05D009210 5.9e-36 154.8 127 64.6
Hund09518 Selenicereus undatus HOM05D007386 ORTHO05D009210 5.0e-35 151.8 174 54.6
Nitab4.5_0000252g0090 Nicotiana tabacum HOM05D007386 ORTHO05D009210 5.5e-34 148.3 180 50.6
Nitab4.5_0009452g0010 Nicotiana tabacum HOM05D007386 ORTHO05D009210 2.1e-33 146.4 185 49.7
Dinv34778 Davidia involucrata HOM05D002659 ORTHO05D002940 3.6e-33 145.6 113 68.1
HPP92_020354 Vanilla planifolia HOM05D007386 ORTHO05D009210 1.2e-31 140.6 184 52.7
Sed0008482 Sechium edule HOM05D007386 ORTHO05D009210 1.5e-31 140.2 181 51.9
ATR0665G488 Amborella trichopoda HOM05D007386 ORTHO05D009210 2.6e-31 139.4 123 64.2
Carub.0006s3245 Capsella rubella HOM05D007386 ORTHO05D009210 5.7e-31 138.3 126 59.5
A09p26200 Brassica napus HOM05D007386 ORTHO05D009210 7.5e-31 137.9 125 59.2
BraA09t38188Z Brassica rapa HOM05D007386 ORTHO05D009210 7.5e-31 137.9 125 59.2
CARHR252930 Cardamine hirsuta HOM05D007386 ORTHO05D009210 7.5e-31 137.9 125 59.2
AL6G48080 Arabidopsis lyrata HOM05D007386 ORTHO05D009210 6.3e-30 134.8 126 58.7
BcaB01g01820 Brassica carinata HOM05D007386 ORTHO05D009210 8.3e-30 134.4 125 56.8
Lsat_1_v5_gn_9_6101 Lactuca sativa HOM05D007386 ORTHO05D009210 8.3e-30 134.4 177 49.2
Lj5g0008996 Lotus japonicus HOM05D007386 ORTHO05D009210 8.3e-30 134.4 176 50.6
BcaC04g21312 Brassica carinata HOM05D007386 ORTHO05D009210 2.4e-29 132.9 151 53.0
C09p33290 Brassica napus HOM05D007386 ORTHO05D009210 2.4e-29 132.9 151 53.0
BolC9t56165H Brassica oleracea HOM05D007386 ORTHO05D009210 2.4e-29 132.9 151 53.0
THA.LOC104813154 Tarenaya hassleriana HOM05D007386 ORTHO05D009210 4.1e-29 132.1 135 51.9
AT4G04614 Arabidopsis thaliana HOM05D007386 ORTHO05D009210 5.4e-29 131.7 157 54.8
Thhalv10029017m.g Eutrema salsugineum HOM05D007386 ORTHO05D009210 7.0e-29 131.3 143 54.5
Migut.D00331 Erythranthe guttata HOM05D007386 ORTHO05D009210 9.1e-29 131.0 120 62.5
Aa31LG9G9760 Aethionema arabicum HOM05D000698 ORTHO05D009210 2.7e-28 129.4 125 56.0
Cc01_g19160 Coffea canephora HOM05D007386 ORTHO05D009210 3.5e-28 129.0 190 48.9
CsaV3_7G027780 Cucumis sativus L. HOM05D007386 ORTHO05D009210 7.7e-28 127.9 194 45.4
Ciclev10022575m.g Citrus clementina HOM05D007386 ORTHO05D009210 1.0e-27 127.5 132 56.1
Sp6g04310 Schrenkiella parvula HOM05D007386 ORTHO05D009210 1.3e-27 127.1 173 47.4
MD03G1260500 Malus domestica HOM05D007386 ORTHO05D009210 1.1e-26 124.0 183 47.0
SGA_v2.0_scaffold1G00514 Striga asiatica HOM05D007386 ORTHO05D009210 1.1e-26 124.0 183 49.7
unitig_0.g1138 Utricularia gibba HOM05D007386 ORTHO05D009210 1.9e-26 123.2 177 50.3
Aqoxy5G00426 Aquilegia oxysepala HOM05D007386 ORTHO05D009210 1.2e-25 120.6 185 44.3
Peaxi162Scf00230g01010 Petunia axillaris HOM05D007386 ORTHO05D009210 2.8e-25 119.4 174 46.0
MD11G1280800 Malus domestica HOM05D007386 ORTHO05D009210 8.0e-25 117.9 185 44.3
Atru.chr5.1489 Acer truncatum HOM05D007386 ORTHO05D009210 1.2e-23 114.0 180 43.9
PSO832G2845 Papaver somniferum HOM05D007386 ORTHO05D009210 1.3e-22 110.5 145 49.7
PSO210G0643 Papaver somniferum HOM05D007386 ORTHO05D009210 4.9e-22 108.6 149 48.3
FAN15G1284 Fragaria x ananassa HOM05D007386 ORTHO05D009210 1.8e-21 106.7 184 44.6
SMO351G0424 Selaginella moellendorffii HOM05D007386 ORTHO05D009210 2.0e-20 103.2 125 48.0
FvH4_2g23140 Fragaria vesca HOM05D007386 ORTHO05D009210 7.8e-20 101.3 191 41.4
RcHm_v2.0_Chr6g0290391 Rosa chinensis HOM05D007386 ORTHO05D009210 2.9e-19 99.4 189 42.3
FAN24G1308 Fragaria x ananassa HOM05D007386 ORTHO05D009210 3.3e-18 95.9 187 40.1
Pp3c25_4880 Physcomitrium patens HOM05D007386 ORTHO05D009210 5.6e-18 95.1 177 42.4
arahy.Tifrunner.gnm1.ann1.90IGTQ Arachis hypogaea HOM05D007386 ORTHO05D009210 7.3e-18 94.7 117 53.0
Sopen09g027270 Solanum pennellii HOM05D007386 ORTHO05D009210 7.3e-18 94.7 175 39.4
Solyc09g065510.3 Solanum lycopersicum HOM05D007386 ORTHO05D009210 4.4e-15 85.5 175 37.7
FAN20G3170 Fragaria x ananassa HOM05D007386 ORTHO05D009210 6.4e-14 81.6 188 37.8
Os06g0630300 Oryza sativa ssp. japonica HOM05D007386 ORTHO05D009210 2.0e-12 76.6 184 35.3
PGSC0003DMG400019353 Solanum tuberosum HOM05D007386 ORTHO05D009210 2.7e-12 76.3 174 36.2
FAN27G1502 Fragaria x ananassa HOM05D007386 ORTHO05D009210 6.0e-12 75.1 132 42.4
SGA_v2.0_scaffold244G44361 Striga asiatica HOM05D007386 ORTHO05D009210 1.0e-11 74.3 177 40.7
CAN.G1105.2 Capsicum annuum HOM05D007386 ORTHO05D009210 1.7e-11 73.6 174 36.8
SEGI_27286 Sequoiadendron giganteum HOM05D007386 ORTHO05D009210 1.5e-10 70.5 78 47.4
Mapoly0035s0101 Marchantia polymorpha HOM05D007386 ORTHO05D009210 3.6e-09 65.9 184 33.2
arahy.Tifrunner.gnm1.ann1.92TB4L Arachis hypogaea HOM05D007386 ORTHO05D009210 8.0e-09 64.7 80 48.8


User provided reference genes

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