Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0000500 Simmondsia chinensis HOM05D007400 ORTHO05D009351 2.1e-67 258.8 125 100.0
Gohir.A05G144700 Gossypium hirsutum HOM05D007400 ORTHO05D009351 9.1e-55 216.9 117 85.5
Actinidia11209 Actinidia chinensis HOM05D007400 ORTHO05D009351 1.2e-54 216.5 117 85.5
GSVIVG01012101001 Vitis vinifera HOM05D007400 ORTHO05D009351 1.2e-54 216.5 117 86.3
Duzib192G0901 Durio zibethinus HOM05D007400 ORTHO05D009351 1.6e-54 216.1 117 86.3
Hma1.2p1_0040F.1_g025040 Hydrangea macrophylla HOM05D007400 ORTHO05D009351 1.6e-54 216.1 117 84.6
Ciclev10016614m.g Citrus clementina HOM05D007400 ORTHO05D009351 3.5e-54 214.9 117 85.5
Thecc.06G140800 Theobroma cacao HOM05D007400 ORTHO05D009351 3.5e-54 214.9 117 86.3
ATR0763G247 Amborella trichopoda HOM05D007400 ORTHO05D009351 4.5e-54 214.5 119 82.4
Gorai.009G151100 Gossypium raimondii HOM05D007400 ORTHO05D009351 4.5e-54 214.5 117 84.6
Gohir.D05G147100 Gossypium hirsutum HOM05D007400 ORTHO05D009351 1.0e-53 213.4 117 83.8
Potri.012G119800 Populus trichocarpa HOM05D007400 ORTHO05D009351 1.0e-53 213.4 115 86.1
QL11p018093 Quercus lobata HOM05D007400 ORTHO05D009351 1.3e-53 213.0 117 84.6
CiPaw.10G065400 Carya illinoinensis HOM05D007400 ORTHO05D009351 1.7e-53 212.6 117 83.8
Os02g0168700 Oryza sativa ssp. japonica HOM05D007400 ORTHO05D009351 5.0e-53 211.1 115 83.5
Cfa000725 Carpinus fangiana HOM05D007400 ORTHO05D009351 6.5e-53 210.7 117 82.1
PGR042G1002 Punica granatum HOM05D007400 ORTHO05D009351 6.5e-53 210.7 122 82.8
Haze_06019 Corylus avellana HOM05D007400 ORTHO05D009351 1.1e-52 209.9 117 82.1
Glyma.10G066600 Glycine max HOM05D007400 ORTHO05D009351 1.1e-52 209.9 117 83.8
Zm00001eb207360 Zea mays HOM05D007400 ORTHO05D009351 1.1e-52 209.9 115 82.6
HanXRQChr15g0487331 Helianthus annuus HOM05D007400 ORTHO05D009351 1.9e-52 209.1 117 82.1
AUR62011827 Chenopodium quinoa HOM05D007400 ORTHO05D009351 2.5e-52 208.8 115 82.6
MD00G1111500 Malus domestica HOM05D007400 ORTHO05D009351 2.5e-52 208.8 117 81.2
CAN.G1222.5 Capsicum annuum HOM05D007400 ORTHO05D009351 3.2e-52 208.4 117 81.2
MELO3C021776.2 Cucumis melo HOM05D007400 ORTHO05D009351 3.2e-52 208.4 123 75.6
Lsat_1_v5_gn_8_117760 Lactuca sativa HOM05D007400 ORTHO05D009351 3.2e-52 208.4 117 80.3
Nn7g38084 Nelumbo nucifera HOM05D007400 ORTHO05D009351 3.2e-52 208.4 112 85.7
Cpa.g.sc135.34 Carica papaya HOM05D007400 ORTHO05D009351 5.5e-52 207.6 117 82.1
CDE05G1756 Ceratophyllum demersum HOM05D007400 ORTHO05D009351 5.5e-52 207.6 117 81.2
ClCG01G009370 Citrullus lanatus HOM05D007400 ORTHO05D009351 5.5e-52 207.6 117 79.5
TAR626G1335 Trochodendron aralioides HOM05D007400 ORTHO05D009351 5.5e-52 207.6 117 81.2
CSS0009058 Camellia sinensis var. sinensis HOM05D007400 ORTHO05D009351 7.2e-52 207.2 117 82.1
Cc09_g06320 Coffea canephora HOM05D007400 ORTHO05D009351 7.2e-52 207.2 117 81.2
FvH4_4g09390 Fragaria vesca HOM05D007400 ORTHO05D009351 7.2e-52 207.2 117 79.5
Lj5g0000759 Lotus japonicus HOM05D007400 ORTHO05D009351 7.2e-52 207.2 117 82.1
Medtr1g061080 Medicago truncatula HOM05D007400 ORTHO05D009351 7.2e-52 207.2 117 81.2
Phvul.007G223000 Phaseolus vulgaris HOM05D007400 ORTHO05D009351 7.2e-52 207.2 117 82.1
Solyc02g069130.3 Solanum lycopersicum HOM05D007400 ORTHO05D009351 7.2e-52 207.2 117 80.3
Sopen02g018260 Solanum pennellii HOM05D007400 ORTHO05D009351 7.2e-52 207.2 117 80.3
Lj2A352T41 Lonicera japonica HOM05D007400 ORTHO05D009351 9.4e-52 206.8 117 82.1
CsaV3_1G046550 Cucumis sativus L. HOM05D007400 ORTHO05D009351 1.2e-51 206.5 117 78.6
CANSAT11G1633 Cannabis sativa HOM05D007400 ORTHO05D009351 1.6e-51 206.1 117 79.5
Oeu050064.1 Olea europaea HOM05D007400 ORTHO05D009351 1.6e-51 206.1 117 81.2
Peaxi162Scf00149g01015 Petunia axillaris HOM05D007400 ORTHO05D009351 1.6e-51 206.1 117 81.2
TPR.G5680 Trifolium pratense HOM05D007400 ORTHO05D009351 1.6e-51 206.1 118 80.5
arahy.Tifrunner.gnm1.ann1.L1RKW0 Arachis hypogaea HOM05D007400 ORTHO05D009351 2.1e-51 205.7 120 80.8
RcHm_v2.0_Chr4g0402661 Rosa chinensis HOM05D007400 ORTHO05D009351 2.1e-51 205.7 117 77.8
Atru.chr10.612 Acer truncatum HOM05D007400 ORTHO05D009351 2.7e-51 205.3 118 82.2
CSS0000937 Camellia sinensis var. sinensis HOM05D007400 ORTHO05D009351 2.7e-51 205.3 117 82.1
ECA232G4176 Erigeron canadensis HOM05D007400 ORTHO05D009351 2.7e-51 205.3 117 79.5
THA.LOC104811504 Tarenaya hassleriana HOM05D007400 ORTHO05D009351 2.7e-51 205.3 117 81.2
arahy.Tifrunner.gnm1.ann1.ARB9WH Arachis hypogaea HOM05D007400 ORTHO05D009351 3.6e-51 204.9 117 81.2
Lalb_Chr09g0328751 Lupinus albus HOM05D007400 ORTHO05D009351 4.7e-51 204.5 117 80.3
Sp7g18330 Schrenkiella parvula HOM05D007400 ORTHO05D009351 4.7e-51 204.5 117 80.3
vmacro11006 Vaccinium macrocarpon HOM05D007400 ORTHO05D009351 4.7e-51 204.5 123 79.7
Eucgr.E01894 Eucalyptus grandis HOM05D007400 ORTHO05D009351 6.1e-51 204.1 117 79.5
Carub.0007s2138 Capsella rubella HOM05D007400 ORTHO05D009351 8.0e-51 203.8 114 82.5
TWI63G0941 Tripterygium wilfordii HOM05D007400 ORTHO05D009351 8.0e-51 203.8 117 81.2
Migut.L00012 Erythranthe guttata HOM05D007400 ORTHO05D009351 1.0e-50 203.4 115 80.0
FAN22G1838 Fragaria x ananassa HOM05D007400 ORTHO05D009351 1.0e-50 203.4 119 77.3
PSO675G6700 Papaver somniferum HOM05D007400 ORTHO05D009351 1.0e-50 203.4 120 79.2
DCAR_003791 Daucus carota HOM05D007400 ORTHO05D009351 1.4e-50 203.0 117 78.6
AT4G19830 Arabidopsis thaliana HOM05D007400 ORTHO05D009351 2.3e-50 202.2 114 80.7
Thhalv10026156m.g Eutrema salsugineum HOM05D007400 ORTHO05D009351 2.3e-50 202.2 114 81.6
Nitab4.5_0017218g0010 Nicotiana tabacum HOM05D007400 ORTHO05D009351 2.3e-50 202.2 112 82.1
CARHR226600 Cardamine hirsuta HOM05D007400 ORTHO05D009351 3.0e-50 201.8 114 80.7
Sed0027636 Sechium edule HOM05D007400 ORTHO05D009351 3.0e-50 201.8 117 77.8
unitig_61.g26077 Utricularia gibba HOM05D007400 ORTHO05D009351 3.0e-50 201.8 117 76.9
BcaB03g11643 Brassica carinata HOM05D007400 ORTHO05D009351 4.0e-50 201.4 114 80.7
BcaC01g00636 Brassica carinata HOM05D007400 ORTHO05D009351 4.0e-50 201.4 114 80.7
A08p14510 Brassica napus HOM05D007400 ORTHO05D009351 4.0e-50 201.4 114 80.7
C03p82350 Brassica napus HOM05D007400 ORTHO05D009351 4.0e-50 201.4 114 80.7
BolC3t20518H Brassica oleracea HOM05D007400 ORTHO05D009351 4.0e-50 201.4 114 80.7
BraA08t33439Z Brassica rapa HOM05D007400 ORTHO05D009351 4.0e-50 201.4 114 80.7
Aa31LG6G2310 Aethionema arabicum HOM05D007400 ORTHO05D009351 5.2e-50 201.1 113 81.4
VMungo0720G1846 Vigna mungo HOM05D007400 ORTHO05D009351 5.2e-50 201.1 128 76.6
Cc11_g00930 Coffea canephora HOM05D007400 ORTHO05D009351 2.8e-48 195.3 117 76.1
Mapoly0025s0105 Marchantia polymorpha HOM05D007400 ORTHO05D009351 1.4e-47 193.0 115 75.7
SMO270G0023 Selaginella moellendorffii HOM05D007400 ORTHO05D009351 1.4e-47 193.0 115 74.8
Ca_11627_v3 Cicer arietinum L. HOM05D007400 ORTHO05D009351 3.5e-46 188.3 117 75.2
AagrBONN_evm.TU.Sc2ySwM_344.2066 Anthoceros agrestis HOM05D003486 ORTHO05D004600 4.5e-46 188.0 115 74.8
MBI09_g37060_MAGBIO Magnolia biondii HOM05D007400 ORTHO05D009351 1.3e-45 186.4 162 58.6
Manes.16G059200 Manihot esculenta HOM05D007400 ORTHO05D009351 6.5e-45 184.1 169 57.4
Pp3c2_2300 Physcomitrium patens HOM05D007400 ORTHO05D009351 3.2e-44 181.8 115 73.9
MBI09_g28984_MAGBIO Magnolia biondii HOM05D007400 ORTHO05D009351 9.8e-41 170.2 182 50.5
CSS0044125 Camellia sinensis var. sinensis HOM05D007400 ORTHO05D009351 1.6e-38 162.9 89 83.1
PSO675G3258 Papaver somniferum HOM05D007400 ORTHO05D009351 1.3e-37 159.8 99 74.7
Rhsim02G0169200 Rhododendron simsii HOM05D007400 ORTHO05D009351 4.0e-34 148.3 234 39.7
COL.COLO4_30978 Corchorus olitorius HOM05D000065 ORTHO05D001606 2.6e-33 145.6 116 60.3
Migut.C00263 Erythranthe guttata HOM05D007400 ORTHO05D009351 1.3e-32 143.3 87 77.0
Ah.02g112190 Amaranthus hybridus HOM05D007400 ORTHO05D009351 2.2e-32 142.5 78 85.9
CSS0019726 Camellia sinensis var. sinensis HOM05D007400 ORTHO05D009351 6.3e-32 141.0 78 80.8
Dinv04112 Davidia involucrata HOM05D007400 ORTHO05D009351 1.1e-31 140.2 78 80.8
Prupe.1G087100 Prunus persica HOM05D007400 ORTHO05D009351 3.1e-31 138.7 78 76.9
EL10As5g23512 Beta vulgaris HOM05D007400 ORTHO05D009351 5.4e-31 137.9 78 83.3
AUR62024671 Chenopodium quinoa HOM05D007400 ORTHO05D009351 5.4e-31 137.9 90 75.6
FAN12G2033 Fragaria x ananassa HOM05D007400 ORTHO05D009351 1.0e-29 133.7 78 73.1
SGA_v2.0_scaffold341G49377 Striga asiatica HOM05D007400 ORTHO05D009351 1.7e-29 132.9 76 84.2
Psat6g078400 Pisum sativum HOM05D007400 ORTHO05D009351 2.3e-29 132.5 78 74.4
AL7G34250 Arabidopsis lyrata HOM05D007400 ORTHO05D009351 3.8e-29 131.7 78 74.4
Sabra12G0089100 Salix brachista HOM05D007400 ORTHO05D009351 5.0e-29 131.3 115 59.1
MBI08_g39084_MAGBIO Magnolia biondii HOM05D007400 ORTHO05D009351 8.6e-29 130.6 78 71.8
AL7G34270 Arabidopsis lyrata HOM05D000741 ORTHO05D000506 1.2e-14 83.6 110 46.4
Nitab4.5_0002056g0010 Nicotiana tabacum HOM05D007400 ORTHO05D009351 6.6e-13 77.8 40 82.5
Thecc.06G140000 Theobroma cacao HOM05D007400 ORTHO05D009351 2.5e-12 75.9 45 68.9
Ah.02g112200 Amaranthus hybridus HOM05D007400 ORTHO05D009351 9.5e-12 73.9 37 81.1
MBI03_g31611_MAGBIO Magnolia biondii HOM05D007400 ORTHO05D009351 2.3e-10 69.3 36 91.7
RcHm_v2.0_Chr5g0075531 Rosa chinensis HOM05D007127 ORTHO05D008803 2.4e-07 59.3 104 34.6
AagrBONN_evm.TU.Sc2ySwM_368.1220 Anthoceros agrestis HOM05D007127 ORTHO05D008803 3.2e-07 58.9 109 31.2
RcHm_v2.0_Chr5g0075491 Rosa chinensis HOM05D007127 ORTHO05D008803 3.2e-07 58.9 91 35.2
Pp3c5_13790 Physcomitrium patens HOM05D002468 ORTHO05D009172 5.4e-07 58.2 85 40.0
SMO356G0109 Selaginella moellendorffii HOM05D007127 ORTHO05D008803 5.4e-07 58.2 104 34.6
Pp3c5_10020 Physcomitrium patens HOM05D007127 ORTHO05D008803 1.2e-06 57.0 104 31.7
GSVIVG01014748001 Vitis vinifera HOM05D007127 ORTHO05D008803 1.2e-06 57.0 104 34.6
CANSAT11G1343 Cannabis sativa HOM05D007127 ORTHO05D008803 1.6e-06 56.6 104 34.6
Potri.001G467100 Populus trichocarpa HOM05D007127 ORTHO05D008803 1.6e-06 56.6 104 34.6
FAN25G0358 Fragaria x ananassa HOM05D007127 ORTHO05D008803 2.1e-06 56.2 104 34.6
Lj6g0006308 Lotus japonicus HOM05D007127 ORTHO05D008803 2.1e-06 56.2 90 34.4
Cpa.g.sc12.104 Carica papaya HOM05D007127 ORTHO05D008803 2.7e-06 55.8 104 31.7
Glyma.18G074000 Glycine max HOM05D007127 ORTHO05D008803 2.7e-06 55.8 91 33.0
DCAR_013258 Daucus carota HOM05D007127 ORTHO05D008803 3.5e-06 55.5 104 34.6
Atru.BG.133.p Acer truncatum HOM05D007127 ORTHO05D008803 4.6e-06 55.1 104 32.7
AUR62017126 Chenopodium quinoa HOM05D007127 ORTHO05D008803 4.6e-06 55.1 91 34.1
AUR62035684 Chenopodium quinoa HOM05D007127 ORTHO05D008803 4.6e-06 55.1 91 34.1
FAN01G0077 Fragaria x ananassa HOM05D001907 ORTHO05D002387 4.6e-06 55.1 116 35.3
Hma1.2p1_0193F.1_g083963 Hydrangea macrophylla HOM05D007127 ORTHO05D008803 4.6e-06 55.1 104 33.7
Mapoly0061s0100 Marchantia polymorpha HOM05D002468 ORTHO05D009172 4.6e-06 55.1 86 39.5
RcHm_v2.0_Chr5g0075521 Rosa chinensis HOM05D007127 ORTHO05D008803 4.6e-06 55.1 80 38.8
Sabra16G0317000 Salix brachista HOM05D007127 ORTHO05D008803 4.6e-06 55.1 102 33.3
GSVIVG01009318001 Vitis vinifera HOM05D000371 ORTHO05D001484 6.0e-06 54.7 78 38.5
Ciclev10009425m.g Citrus clementina HOM05D007127 ORTHO05D008803 7.8e-06 54.3 104 33.7
Glyma.08G333000 Glycine max HOM05D007127 ORTHO05D008803 7.8e-06 54.3 62 43.5
Lj8A180T97 Lonicera japonica HOM05D007127 ORTHO05D008803 7.8e-06 54.3 104 33.7


User provided reference genes

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