Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0000210 Simmondsia chinensis HOM05D005348 ORTHO05D006635 0.0e+00 1493.4 741 100.0
Actinidia05223 Actinidia chinensis HOM05D005348 ORTHO05D006635 1.6e-295 1019.2 741 67.1
TAR375G0646 Trochodendron aralioides HOM05D005348 ORTHO05D006635 4.5e-295 1017.7 754 69.0
Dinv39001 Davidia involucrata HOM05D005348 ORTHO05D006635 5.6e-293 1010.7 732 69.5
CSS0016729 Camellia sinensis var. sinensis HOM05D005348 ORTHO05D006635 1.6e-292 1009.2 724 67.8
GSVIVG01019819001 Vitis vinifera HOM05D005348 ORTHO05D006635 1.4e-291 1006.1 803 64.6
QL12p017446 Quercus lobata HOM05D005348 ORTHO05D006635 2.3e-291 1005.4 714 70.6
Prupe.5G092400 Prunus persica HOM05D005348 ORTHO05D006635 1.3e-289 999.6 701 70.0
Migut.E01288 Erythranthe guttata HOM05D005348 ORTHO05D006635 3.7e-289 998.0 678 70.9
Thecc.03G272300 Theobroma cacao HOM05D005348 ORTHO05D006635 4.1e-288 994.6 609 77.5
FvH4_5g28890 Fragaria vesca HOM05D005348 ORTHO05D006635 5.4e-288 994.2 679 70.4
Medtr5g010740 Medicago truncatula HOM05D005348 ORTHO05D006635 2.0e-287 992.3 634 74.4
EL10Ac4g10111 Beta vulgaris HOM05D005348 ORTHO05D006635 1.0e-286 989.9 740 68.4
Duzib068G0163 Durio zibethinus HOM05D005348 ORTHO05D006635 3.0e-286 988.4 709 69.0
Psat2g181800 Pisum sativum HOM05D005348 ORTHO05D006635 8.6e-286 986.9 710 66.6
TPR.G6715 Trifolium pratense HOM05D005348 ORTHO05D006635 2.5e-285 985.3 683 69.1
Phvul.002G154300 Phaseolus vulgaris HOM05D005348 ORTHO05D006635 5.6e-285 984.2 661 71.3
MD04G1066100 Malus domestica HOM05D005348 ORTHO05D006635 8.0e-284 980.3 671 71.2
CiPaw.11G140300 Carya illinoinensis HOM05D005348 ORTHO05D006635 4.0e-283 978.0 699 68.8
Gorai.007G022400 Gossypium raimondii HOM05D005348 ORTHO05D006635 5.2e-283 977.6 689 69.2
PGR031G1121 Punica granatum HOM05D005348 ORTHO05D006635 3.4e-282 974.9 707 66.3
Lj2g0017844 Lotus japonicus HOM05D005348 ORTHO05D006635 1.9e-280 969.1 707 66.9
Manes.02G025740 Manihot esculenta HOM05D005348 ORTHO05D006635 1.3e-278 963.0 692 68.5
CANSAT21G2165 Cannabis sativa HOM05D005348 ORTHO05D006635 3.0e-278 961.8 590 75.1
Sopen08g028770 Solanum pennellii HOM05D005348 ORTHO05D006635 3.0e-278 961.8 783 61.8
SGA_v2.0_scaffold144G35970 Striga asiatica HOM05D005348 ORTHO05D006635 6.6e-278 960.7 576 77.3
PSO782G2170 Papaver somniferum HOM05D005348 ORTHO05D006635 8.6e-278 960.3 677 68.5
CAN.G981.21 Capsicum annuum HOM05D005348 ORTHO05D006635 1.1e-277 959.9 781 62.0
Eucgr.D01915 Eucalyptus grandis HOM05D005348 ORTHO05D006635 7.3e-277 957.2 755 64.2
Ah.06g194640 Amaranthus hybridus HOM05D005348 ORTHO05D006635 4.7e-276 954.5 603 75.5
Aqoxy7G00422 Aquilegia oxysepala HOM05D005348 ORTHO05D006635 6.2e-276 954.1 673 68.9
ClCG01G003080 Citrullus lanatus HOM05D005348 ORTHO05D006635 5.2e-275 951.0 689 67.1
PSO478G3496 Papaver somniferum HOM05D005348 ORTHO05D006635 5.2e-275 951.0 678 68.3
arahy.Tifrunner.gnm1.ann1.SKE7H3 Arachis hypogaea HOM05D005348 ORTHO05D006635 2.4e-272 942.2 655 68.9
arahy.Tifrunner.gnm1.ann1.C7APUF Arachis hypogaea HOM05D005348 ORTHO05D006635 7.1e-272 940.6 665 69.0
Sed0022971 Sechium edule HOM05D005348 ORTHO05D006635 4.6e-271 937.9 647 69.4
Sabra01G0082300 Salix brachista HOM05D005348 ORTHO05D006635 1.9e-269 932.6 738 62.9
THA.LOC104813014 Tarenaya hassleriana HOM05D005348 ORTHO05D006635 1.9e-269 932.6 621 70.4
Carub.0006s3081 Capsella rubella HOM05D005348 ORTHO05D006635 3.3e-269 931.8 634 69.9
AL6G46320 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 4.3e-269 931.4 575 75.3
AT4G11720 Arabidopsis thaliana HOM05D005348 ORTHO05D006635 9.6e-269 930.2 575 75.0
Cc08_g14090 Coffea canephora HOM05D005348 ORTHO05D006635 4.7e-268 927.9 778 60.2
CARHR254650 Cardamine hirsuta HOM05D005348 ORTHO05D006635 2.4e-267 925.6 594 72.9
AL6G46446 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 8.9e-267 923.7 620 71.1
TWI15G0275 Tripterygium wilfordii HOM05D005348 ORTHO05D006635 1.5e-266 922.9 624 70.4
Ciclev10019148m.g Citrus clementina HOM05D005348 ORTHO05D006635 1.3e-265 919.8 678 68.0
Lalb_Chr16g0377191 Lupinus albus HOM05D005348 ORTHO05D006635 1.1e-264 916.8 725 62.8
RcHm_v2.0_Chr4g0410761 Rosa chinensis HOM05D005348 ORTHO05D006635 4.2e-264 914.8 679 67.3
Rhsim07G0093800 Rhododendron simsii HOM05D005348 ORTHO05D006635 8.7e-262 907.1 892 55.2
BraA09t38310Z Brassica rapa HOM05D005348 ORTHO05D006635 9.6e-261 903.7 583 72.2
SHI23548 Sapria himalayana HOM05D005348 ORTHO05D006635 1.3e-260 903.3 641 68.2
DCAR_006756 Daucus carota HOM05D005348 ORTHO05D006635 2.4e-259 899.0 725 65.2
Sp6g05730 Schrenkiella parvula HOM05D005348 ORTHO05D006635 5.3e-259 897.9 575 72.5
BolC9t56320H Brassica oleracea HOM05D005348 ORTHO05D006635 9.0e-259 897.1 599 70.1
Lsat_1_v5_gn_3_5380 Lactuca sativa HOM05D005348 ORTHO05D006635 2.9e-257 892.1 614 68.2
FAN13G3003 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.2e-255 886.7 714 62.7
A09p27390 Brassica napus HOM05D005348 ORTHO05D006635 2.7e-255 885.6 575 71.8
Potri.001G109000 Populus trichocarpa HOM05D005348 ORTHO05D006635 4.6e-255 884.8 530 77.4
SalBow1G6288 Salvia bowleyana HOM05D005348 ORTHO05D006635 6.0e-255 884.4 654 68.3
C09p34740 Brassica napus HOM05D005348 ORTHO05D006635 1.3e-254 883.2 575 71.5
ECA240G2378 Erigeron canadensis HOM05D005348 ORTHO05D006635 3.9e-254 881.7 598 68.6
BcaB01g01675 Brassica carinata HOM05D005348 ORTHO05D006635 8.7e-254 880.6 588 70.4
Nn6g34225 Nelumbo nucifera HOM05D005348 ORTHO05D006635 1.6e-252 876.3 531 77.4
BcaB05g23815 Brassica carinata HOM05D005348 ORTHO05D006635 2.0e-250 869.4 604 67.5
vmacro13927 Vaccinium macrocarpon HOM05D005348 ORTHO05D006635 2.6e-250 869.0 777 57.8
Manes.01G066000 Manihot esculenta HOM05D005348 ORTHO05D006635 9.3e-248 860.5 554 72.7
Glyma.15G240000 Glycine max HOM05D005348 ORTHO05D006635 5.1e-246 854.7 515 76.7
Aa31LG9G10660 Aethionema arabicum HOM05D005348 ORTHO05D006635 6.7e-246 854.4 575 70.6
Thhalv10028515m.g Eutrema salsugineum HOM05D005348 ORTHO05D006635 7.4e-245 850.9 550 71.5
Glyma.11G026100 Glycine max HOM05D005348 ORTHO05D006635 3.7e-244 848.6 515 76.5
MELO3C005635.2 Cucumis melo HOM05D005348 ORTHO05D006635 6.2e-244 847.8 571 70.6
Haze_08938 Corylus avellana HOM05D005348 ORTHO05D006635 1.8e-243 846.3 754 59.4
FAN18G1071 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.5e-240 835.9 580 69.3
AUR62006548 Chenopodium quinoa HOM05D005348 ORTHO05D006635 3.0e-238 828.9 510 76.5
AUR62037708 Chenopodium quinoa HOM05D005348 ORTHO05D006635 6.9e-235 817.8 544 74.1
Glyma.09G081600 Glycine max HOM05D005348 ORTHO05D006635 3.4e-234 815.5 483 77.2
AUR62000200 Chenopodium quinoa HOM05D005348 ORTHO05D006635 9.3e-232 807.4 522 75.1
Nitab4.5_0002234g0010 Nicotiana tabacum HOM05D005348 ORTHO05D006635 1.3e-230 803.5 743 57.2
Peaxi162Scf00714g00430 Petunia axillaris HOM05D005348 ORTHO05D006635 3.9e-230 802.0 487 78.9
FAN18G0890 Fragaria x ananassa HOM05D005348 ORTHO05D006635 6.7e-230 801.2 679 61.0
CsaV3_5G003200 Cucumis sativus L. HOM05D005348 ORTHO05D006635 6.7e-222 774.6 540 69.8
Solyc08g080450.3 Solanum lycopersicum HOM05D005348 ORTHO05D006635 2.5e-221 772.7 558 68.5
RcHm_v2.0_Chr7g0199071 Rosa chinensis HOM05D005348 ORTHO05D006635 3.9e-214 748.8 660 59.2
Atru.chr9.1551 Acer truncatum HOM05D005348 ORTHO05D006635 1.2e-207 727.2 509 68.6
MBI04_g31975_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 3.3e-205 719.2 634 58.8
Os05g0269500 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 5.5e-200 701.8 578 60.0
COL.COLO4_05261 Corchorus olitorius HOM05D005348 ORTHO05D006635 2.3e-198 696.4 694 54.0
VMungo1215G1946 Vigna mungo HOM05D005348 ORTHO05D006635 1.3e-196 690.6 395 81.8
FvH4_5g01650 Fragaria vesca HOM05D005348 ORTHO05D006635 5.9e-194 681.8 508 67.1
Os09g0525700 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 1.3e-193 680.6 583 59.0
Gohir.D11G021100 Gossypium hirsutum HOM05D005348 ORTHO05D006635 3.6e-191 672.5 505 65.5
Gohir.A11G021400 Gossypium hirsutum HOM05D005348 ORTHO05D006635 5.4e-187 658.7 510 64.1
Nitab4.5_0002853g0050 Nicotiana tabacum HOM05D005348 ORTHO05D006635 5.0e-185 652.1 744 50.8
Lj8C237T7 Lonicera japonica HOM05D005348 ORTHO05D006635 1.6e-175 620.5 398 74.1
Ca_06657_v3 Cicer arietinum L. HOM05D005348 ORTHO05D006635 3.1e-174 616.3 638 53.9
unitig_26.g9696 Utricularia gibba HOM05D005348 ORTHO05D006635 2.3e-158 563.5 654 49.2
Cpa.g.sc29.190 Carica papaya HOM05D005348 ORTHO05D006635 5.4e-155 552.4 359 74.9
HPP92_004952 Vanilla planifolia HOM05D005348 ORTHO05D006635 1.9e-139 500.7 646 45.0
Zm00001eb103180 Zea mays HOM05D005348 ORTHO05D006635 4.8e-135 486.1 380 62.9
Glyma.09G081420 Glycine max HOM05D005348 ORTHO05D006635 1.2e-122 444.9 261 80.5
AUR62000197 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.6e-122 444.5 452 58.2
Hund02678 Selenicereus undatus HOM05D005348 ORTHO05D006635 4.1e-94 350.1 327 62.4
ATR0757G099 Amborella trichopoda HOM05D005348 ORTHO05D006635 2.2e-87 327.8 209 72.7
Hund02677 Selenicereus undatus HOM05D005348 ORTHO05D006635 3.1e-86 323.9 270 66.7
Prupe.8G039500 Prunus persica HOM05D005348 ORTHO05D006635 2.7e-82 310.8 297 55.6
VMungo1215G1628 Vigna mungo HOM05D005348 ORTHO05D006635 2.7e-69 267.7 320 46.9
FAN04G2632 Fragaria x ananassa HOM05D005348 ORTHO05D006635 3.8e-68 263.8 679 30.9
FAN04G3017 Fragaria x ananassa HOM05D005348 ORTHO05D006635 3.4e-64 250.8 244 55.7
Prupe.8G039400 Prunus persica HOM05D005348 ORTHO05D006635 5.0e-60 236.9 221 54.8
MBI04_g31964_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 1.4e-46 192.2 188 55.9
Peaxi162Scf00714g00422 Petunia axillaris HOM05D005348 ORTHO05D006635 3.2e-46 191.0 248 42.7
MSTRG.13824 Avicennia marina HOM05D005348 ORTHO05D006635 7.1e-46 189.9 203 50.2
Glyma.09G081380 Glycine max HOM05D005348 ORTHO05D006635 3.5e-45 187.6 163 55.2
FAN08G1421 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.7e-44 185.3 116 78.4
Glyma.11G176306 Glycine max HOM05D005348 ORTHO05D006635 2.8e-42 177.9 91 85.7
Mapoly0066s0032 Marchantia polymorpha HOM05D005348 ORTHO05D006635 9.9e-40 169.5 481 25.4
Glyma.01G216933 Glycine max HOM05D005348 ORTHO05D006635 1.9e-38 165.2 115 68.7
Cre16.g674852 Chlamydomonas reinhardtii HOM05D005348 ORTHO05D006635 9.2e-38 162.9 651 24.9
CBR_g19301 Chara braunii HOM05D005348 ORTHO05D006635 1.6e-37 162.2 500 26.2
FAN08G1570 Fragaria x ananassa HOM05D005348 ORTHO05D006635 7.8e-37 159.8 175 52.0
Gohir.D11G021150 Gossypium hirsutum HOM05D005348 ORTHO05D006635 3.9e-36 157.5 128 67.2
HanXRQChr02g0035411 Helianthus annuus HOM05D005348 ORTHO05D006635 1.1e-35 156.0 119 59.7
Glyma.11G026250 Glycine max HOM05D005348 ORTHO05D006635 7.3e-35 153.3 103 75.7
Mapoly0035s0066 Marchantia polymorpha HOM05D005348 ORTHO05D006635 1.3e-31 142.5 493 25.6
Pp3c25_15230 Physcomitrium patens HOM05D005348 ORTHO05D006635 8.7e-28 129.8 330 27.9
FAN08G2219 Fragaria x ananassa HOM05D005348 ORTHO05D006635 7.3e-27 126.7 100 62.0
PGSC0003DMG400003049 Solanum tuberosum HOM05D005348 ORTHO05D006635 1.3e-26 125.9 209 42.1
ATR0757G119 Amborella trichopoda HOM05D005348 ORTHO05D006635 3.6e-26 124.4 78 61.5
Lj8A237G27 Lonicera japonica HOM05D005348 ORTHO05D006635 1.4e-25 122.5 78 78.2
FAN13G0849 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.4e-22 112.5 82 68.3
AagrBONN_evm.TU.Sc2ySwM_368.2662 Anthoceros agrestis HOM05D005348 ORTHO05D006635 4.6e-21 107.5 573 21.1
CsaV3_6G021380 Cucumis sativus L. HOM05D005348 ORTHO05D006635 8.1e-18 96.7 132 41.7
arahy.Tifrunner.gnm1.ann1.AXGL4F Arachis hypogaea HOM05D005348 ORTHO05D006635 1.4e-17 95.9 59 72.9
FvH4_5g01630 Fragaria vesca HOM05D005348 ORTHO05D006635 3.1e-17 94.7 64 70.3


User provided reference genes

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