Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0000050 Simmondsia chinensis HOM05D006834 ORTHO05D008623 4.0e-159 564.7 280 100.0
AUR62001071 Chenopodium quinoa HOM05D006834 ORTHO05D008623 3.4e-65 252.7 208 59.6
EL10Ac9g22392 Beta vulgaris HOM05D006834 ORTHO05D008623 1.3e-64 250.8 198 61.1
AUR62032606 Chenopodium quinoa HOM05D006834 ORTHO05D008623 4.8e-64 248.8 208 58.7
CSS0011680 Camellia sinensis var. sinensis HOM05D006834 ORTHO05D008623 3.1e-63 246.1 210 57.1
GSVIVG01028237001 Vitis vinifera HOM05D006834 ORTHO05D008623 4.1e-63 245.7 209 58.4
Thecc.01G326600 Theobroma cacao HOM05D006834 ORTHO05D008623 4.5e-62 242.3 212 55.2
Ciclev10020225m.g Citrus clementina HOM05D006834 ORTHO05D008623 1.3e-61 240.7 204 55.9
TWI59G0932 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 6.5e-61 238.4 208 57.2
Lalb_Chr18g0046351 Lupinus albus HOM05D006834 ORTHO05D008623 2.5e-60 236.5 204 57.8
arahy.Tifrunner.gnm1.ann1.AJ9Z2K Arachis hypogaea HOM05D006834 ORTHO05D008623 4.2e-60 235.7 202 58.4
Dinv12076 Davidia involucrata HOM05D006834 ORTHO05D008623 9.4e-60 234.6 212 55.7
Potri.002G186100 Populus trichocarpa HOM05D006834 ORTHO05D008623 1.2e-59 234.2 211 55.5
Atru.chr5.848 Acer truncatum HOM05D006834 ORTHO05D008623 2.7e-59 233.0 203 55.7
VMungo1383G1632 Vigna mungo HOM05D006834 ORTHO05D008623 2.7e-59 233.0 203 54.2
Duzib138G0585 Durio zibethinus HOM05D006834 ORTHO05D008623 6.1e-59 231.9 213 53.5
Phvul.001G218900 Phaseolus vulgaris HOM05D006834 ORTHO05D008623 6.1e-59 231.9 210 52.4
TPR.G8370 Trifolium pratense HOM05D006834 ORTHO05D008623 8.0e-59 231.5 204 56.4
Cpa.g.sc57.31 Carica papaya HOM05D006834 ORTHO05D008623 1.8e-58 230.3 206 53.9
TAR636G0448 Trochodendron aralioides HOM05D006834 ORTHO05D008623 1.8e-58 230.3 202 54.5
Aa31LG10G16050 Aethionema arabicum HOM05D006834 ORTHO05D008623 2.3e-58 229.9 208 52.9
Glyma.19G222100 Glycine max HOM05D006834 ORTHO05D008623 2.3e-58 229.9 204 54.4
Medtr7g110820 Medicago truncatula HOM05D006834 ORTHO05D008623 2.3e-58 229.9 203 54.2
Psat3g017400 Pisum sativum HOM05D006834 ORTHO05D008623 2.3e-58 229.9 204 57.4
QL12p035081 Quercus lobata HOM05D006834 ORTHO05D008623 5.2e-58 228.8 203 55.7
QL12p035100 Quercus lobata HOM05D006834 ORTHO05D008623 5.2e-58 228.8 203 55.7
Sabra02G0148600 Salix brachista HOM05D006834 ORTHO05D008623 5.2e-58 228.8 207 55.1
Gorai.008G133900 Gossypium raimondii HOM05D006834 ORTHO05D008623 6.8e-58 228.4 212 52.8
Actinidia21334 Actinidia chinensis HOM05D006834 ORTHO05D008623 8.8e-58 228.0 204 52.9
Ah.12g061380 Amaranthus hybridus HOM05D006834 ORTHO05D008623 8.8e-58 228.0 223 54.3
Nn4g25303 Nelumbo nucifera HOM05D006834 ORTHO05D008623 1.2e-57 227.6 202 53.5
PGR042G0322 Punica granatum HOM05D006834 ORTHO05D008623 1.2e-57 227.6 206 56.3
vmacro15952 Vaccinium macrocarpon HOM05D006834 ORTHO05D008623 1.2e-57 227.6 211 53.6
TWI14G0919 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 2.6e-57 226.5 204 54.4
Lj1g0008019 Lotus japonicus HOM05D006834 ORTHO05D008623 3.4e-57 226.1 205 53.2
Gohir.A12G119200 Gossypium hirsutum HOM05D006834 ORTHO05D008623 4.4e-57 225.7 212 52.4
THA.LOC104817424 Tarenaya hassleriana HOM05D006834 ORTHO05D008623 1.3e-56 224.2 209 50.7
PSO761G0283 Papaver somniferum HOM05D006834 ORTHO05D008623 1.7e-56 223.8 202 53.5
AT3G62080 Arabidopsis thaliana HOM05D006834 ORTHO05D008623 2.2e-56 223.4 222 48.6
Carub.0005s2883 Capsella rubella HOM05D006834 ORTHO05D008623 2.2e-56 223.4 205 51.2
arahy.Tifrunner.gnm1.ann1.W0LIHS Arachis hypogaea HOM05D006834 ORTHO05D008623 2.8e-56 223.0 228 51.3
AL5G44760 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 3.7e-56 222.6 205 52.2
Eucgr.A00997 Eucalyptus grandis HOM05D006834 ORTHO05D008623 3.7e-56 222.6 209 51.2
Aqoxy2G02436 Aquilegia oxysepala HOM05D006834 ORTHO05D008623 6.3e-56 221.9 200 54.0
AL5G44880 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 2.4e-55 219.9 205 51.7
CARHR172420 Cardamine hirsuta HOM05D006834 ORTHO05D008623 2.4e-55 219.9 204 51.0
Rhsim01G0000800 Rhododendron simsii HOM05D006834 ORTHO05D008623 4.1e-55 219.2 212 51.4
CsaV3_5G017580 Cucumis sativus L. HOM05D006834 ORTHO05D008623 7.0e-55 218.4 214 51.4
Thhalv10005996m.g Eutrema salsugineum HOM05D006834 ORTHO05D008623 7.0e-55 218.4 204 51.5
MBI18_g03845_MAGBIO Magnolia biondii HOM05D006834 ORTHO05D008623 7.0e-55 218.4 202 52.0
Lsat_1_v5_gn_8_167261 Lactuca sativa HOM05D006834 ORTHO05D008623 9.1e-55 218.0 220 50.0
Ca_09251_v3 Cicer arietinum L. HOM05D006834 ORTHO05D008623 1.2e-54 217.6 204 54.9
Cfa004921 Carpinus fangiana HOM05D006834 ORTHO05D008623 1.6e-54 217.2 217 52.1
PSO210G3353 Papaver somniferum HOM05D006834 ORTHO05D008623 1.6e-54 217.2 202 52.0
Sp5g01290 Schrenkiella parvula HOM05D006834 ORTHO05D008623 1.6e-54 217.2 204 50.5
HanXRQChr06g0167961 Helianthus annuus HOM05D006834 ORTHO05D008623 3.5e-54 216.1 208 48.6
Sed0016094 Sechium edule HOM05D006834 ORTHO05D008623 1.0e-53 214.5 214 50.5
CiPaw.08G082000 Carya illinoinensis HOM05D006834 ORTHO05D008623 1.7e-53 213.8 211 53.1
C08p37040 Brassica napus HOM05D006834 ORTHO05D008623 2.9e-53 213.0 205 49.8
BolC8t51281H Brassica oleracea HOM05D006834 ORTHO05D008623 3.8e-53 212.6 205 49.8
BraA09t40830Z Brassica rapa HOM05D006834 ORTHO05D008623 5.0e-53 212.2 206 50.0
CANSAT25G0194 Cannabis sativa HOM05D006834 ORTHO05D008623 5.0e-53 212.2 206 51.9
A09p54180 Brassica napus HOM05D006834 ORTHO05D008623 1.1e-52 211.1 205 49.3
PGSC0003DMG401001116 Solanum tuberosum HOM05D006834 ORTHO05D008623 1.9e-52 210.3 217 49.3
ClCG01G007130 Citrullus lanatus HOM05D006834 ORTHO05D008623 2.5e-52 209.9 214 49.5
DCAR_012294 Daucus carota HOM05D006834 ORTHO05D008623 2.5e-52 209.9 211 48.8
Nitab4.5_0003092g0080 Nicotiana tabacum HOM05D006834 ORTHO05D008623 3.3e-52 209.5 202 51.5
Haze_05159 Corylus avellana HOM05D006834 ORTHO05D008623 1.6e-51 207.2 208 51.9
CAN.G179.29 Capsicum annuum HOM05D006834 ORTHO05D008623 4.7e-51 205.7 204 52.0
Nitab4.5_0007915g0010 Nicotiana tabacum HOM05D006834 ORTHO05D008623 4.7e-51 205.7 220 46.8
MELO3C005199.2 Cucumis melo HOM05D006834 ORTHO05D008623 8.0e-51 204.9 214 49.1
RcHm_v2.0_Chr3g0485641 Rosa chinensis HOM05D006834 ORTHO05D008623 1.4e-50 204.1 214 50.0
MD09G1291400 Malus domestica HOM05D006834 ORTHO05D008623 2.3e-50 203.4 216 49.5
ECA236G2058 Erigeron canadensis HOM05D006834 ORTHO05D007803 5.7e-49 198.7 209 49.3
Oeu008276.1 Olea europaea HOM05D006834 ORTHO05D008623 1.1e-47 194.5 213 46.5
Sopen01g030580 Solanum pennellii HOM05D006834 ORTHO05D008623 1.1e-47 194.5 210 48.6
FAN19G1238 Fragaria x ananassa HOM05D006834 ORTHO05D008623 1.8e-47 193.7 214 45.3
Solyc01g079060.4 Solanum lycopersicum HOM05D006834 ORTHO05D008623 3.2e-47 193.0 199 48.7
BcaC07g40700 Brassica carinata HOM05D006834 ORTHO05D008623 4.1e-47 192.6 205 47.8
Cc01_g21740 Coffea canephora HOM05D006834 ORTHO05D008623 5.4e-47 192.2 213 48.8
FAN26G0527 Fragaria x ananassa HOM05D006834 ORTHO05D008623 1.6e-46 190.7 214 44.9
FAN23G1444 Fragaria x ananassa HOM05D006834 ORTHO05D008623 2.0e-46 190.3 214 44.9
FvH4_1g26150 Fragaria vesca HOM05D006834 ORTHO05D008623 3.5e-46 189.5 214 44.9
ATR0796G131 Amborella trichopoda HOM05D006834 ORTHO05D008623 5.9e-46 188.7 198 45.5
MSTRG.21731 Avicennia marina HOM05D006834 ORTHO05D008623 1.4e-42 177.6 206 46.6
SGA_v2.0_scaffold310G48195 Striga asiatica HOM05D006834 ORTHO05D008623 3.1e-42 176.4 205 44.4
Migut.D01683 Erythranthe guttata HOM05D006834 ORTHO05D008623 1.2e-41 174.5 222 45.9
CDE01G0777 Ceratophyllum demersum HOM05D006834 ORTHO05D008623 3.2e-31 139.8 200 38.0
SMO339G0071 Selaginella moellendorffii HOM05D006834 ORTHO05D008623 9.2e-31 138.3 211 37.4
Mapoly0053s0040 Marchantia polymorpha HOM05D006834 ORTHO05D008623 5.1e-29 132.5 206 35.0
AUR62031719 Chenopodium quinoa HOM05D006834 ORTHO05D008623 3.3e-28 129.8 207 38.2
Os01g0286000 Oryza sativa ssp. japonica HOM05D006834 ORTHO05D008623 3.3e-28 129.8 205 38.0
Peaxi162Scf00309g00627 Petunia axillaris HOM05D006834 ORTHO05D008623 5.6e-28 129.0 198 39.9
Pp3c3_29200 Physcomitrium patens HOM05D006834 ORTHO05D008623 4.7e-27 125.9 207 32.4
Hma1.2p1_1735F.1_g299880 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 4.4e-25 119.4 84 63.1
Manes.05G007900 Manihot esculenta HOM05D006834 ORTHO05D008623 1.3e-24 117.9 122 47.5
COL.COLO4_23116 Corchorus olitorius HOM05D006834 ORTHO05D008623 2.1e-22 110.5 123 45.5
Prupe.3G001500 Prunus persica HOM05D006834 ORTHO05D008623 1.4e-18 97.8 119 47.1
Gohir.D12G123000 Gossypium hirsutum HOM05D006834 ORTHO05D008623 5.2e-18 95.9 114 47.4
Zm00001eb129510 Zea mays HOM05D006834 ORTHO05D008623 3.4e-17 93.2 214 32.7
MELO3C033776.2 Cucumis melo HOM05D006834 ORTHO05D008623 1.6e-14 84.3 68 52.9
MELO3C005268.2 Cucumis melo HOM05D006834 ORTHO05D008623 4.6e-14 82.8 68 54.4
MELO3C032404.2 Cucumis melo HOM05D006834 ORTHO05D008623 1.0e-13 81.6 57 57.9
Hma1.2p1_0408F.1_g146240 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 2.6e-09 67.0 68 48.5
HPP92_001172 Vanilla planifolia HOM05D006834 ORTHO05D008623 5.8e-09 65.9 80 42.5


User provided reference genes

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