Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 2.7e-280 968.0 491 100.0
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 2.2e-261 905.2 494 90.1
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 3.7e-261 904.4 479 91.0
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 4.9e-261 904.0 480 91.2
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 6.3e-261 903.7 495 89.1
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.4e-260 902.5 480 90.0
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 2.4e-260 901.7 479 91.0
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 3.1e-260 901.4 479 91.2
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 7.0e-260 900.2 478 91.2
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 9.2e-260 899.8 480 91.2
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 1.2e-259 899.4 478 92.1
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 2.0e-259 898.7 478 90.2
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 2.0e-259 898.7 478 91.2
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 2.0e-259 898.7 479 91.0
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 3.5e-259 897.9 479 91.2
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 3.5e-259 897.9 477 91.2
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 5.9e-259 897.1 479 91.2
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 5.9e-259 897.1 479 91.4
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 7.8e-259 896.7 493 88.6
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 7.8e-259 896.7 480 91.5
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 1.3e-258 896.0 479 90.2
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 1.3e-258 896.0 476 91.6
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 2.3e-258 895.2 478 90.4
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 2.9e-258 894.8 479 90.6
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 2.9e-258 894.8 479 91.0
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 2.9e-258 894.8 476 90.8
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 3.8e-258 894.4 479 90.0
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 8.6e-258 893.3 479 90.6
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 8.6e-258 893.3 479 89.4
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 1.1e-257 892.9 480 90.6
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 1.1e-257 892.9 479 92.1
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 1.1e-257 892.9 479 89.4
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.5e-257 892.5 479 89.4
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 1.9e-257 892.1 479 91.4
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 1.9e-257 892.1 479 91.2
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 1.9e-257 892.1 479 91.4
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 3.3e-257 891.3 479 91.0
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 3.3e-257 891.3 479 90.0
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 3.3e-257 891.3 479 91.0
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 4.3e-257 891.0 479 91.0
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 4.3e-257 891.0 478 91.2
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 4.3e-257 891.0 479 89.1
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 4.3e-257 891.0 479 89.1
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 5.6e-257 890.6 478 89.5
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 5.6e-257 890.6 479 90.8
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 5.6e-257 890.6 480 89.4
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 5.6e-257 890.6 479 90.8
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 7.3e-257 890.2 480 91.2
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 7.3e-257 890.2 479 90.8
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 9.5e-257 889.8 476 90.8
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 9.5e-257 889.8 478 90.2
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 9.5e-257 889.8 479 90.8
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 9.5e-257 889.8 487 89.7
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 1.2e-256 889.4 479 90.8
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 1.6e-256 889.0 476 90.8
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 2.8e-256 888.3 479 90.6
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 2.8e-256 888.3 479 90.4
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 2.8e-256 888.3 475 90.9
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 2.8e-256 888.3 479 88.9
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 3.6e-256 887.9 479 90.6
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 3.6e-256 887.9 476 91.2
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 3.6e-256 887.9 476 90.5
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 4.7e-256 887.5 479 90.6
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 6.1e-256 887.1 476 90.5
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 8.0e-256 886.7 479 89.8
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 8.0e-256 886.7 479 88.5
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 8.0e-256 886.7 476 90.1
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 1.0e-255 886.3 478 90.6
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 1.4e-255 885.9 480 89.8
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 1.4e-255 885.9 479 90.4
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 2.3e-255 885.2 475 90.5
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 3.0e-255 884.8 465 92.3
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 3.0e-255 884.8 479 90.2
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 4.0e-255 884.4 478 90.4
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 4.0e-255 884.4 479 90.4
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 5.2e-255 884.0 479 90.0
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 5.2e-255 884.0 479 90.4
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 6.8e-255 883.6 478 89.1
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 6.8e-255 883.6 476 88.7
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 6.8e-255 883.6 452 94.0
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 1.2e-254 882.9 476 90.8
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 1.2e-254 882.9 479 88.9
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 2.0e-254 882.1 480 89.4
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 2.0e-254 882.1 480 89.0
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 2.6e-254 881.7 475 90.5
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 4.4e-254 880.9 476 90.8
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 5.8e-254 880.6 477 90.4
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 7.5e-254 880.2 481 90.0
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 7.5e-254 880.2 484 89.7
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 9.8e-254 879.8 479 89.1
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 9.8e-254 879.8 479 89.6
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 1.3e-253 879.4 456 91.9
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 1.3e-253 879.4 479 88.7
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 2.9e-253 878.2 479 88.5
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 2.9e-253 878.2 479 88.5
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 3.7e-253 877.9 479 89.6
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 6.4e-253 877.1 452 92.7
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 1.4e-252 875.9 480 88.8
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 1.9e-252 875.5 445 93.9
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 3.2e-252 874.8 479 89.1
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 5.4e-252 874.0 480 88.5
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 7.0e-252 873.6 479 89.1
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 1.2e-251 872.8 452 92.7
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 4.6e-251 870.9 478 88.1
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 1.0e-250 869.8 454 92.7
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 3.0e-250 868.2 454 92.1
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 1.5e-249 865.9 459 90.8
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 1.8e-247 859.0 451 90.9
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.7e-245 852.4 429 93.0
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 2.9e-245 851.7 460 90.4
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.9e-244 849.0 429 92.8
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 1.0e-242 843.2 429 90.9
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 1.5e-241 839.3 429 90.7
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 1.6e-240 835.9 429 90.2
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 3.6e-240 834.7 429 89.5
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 7.1e-236 820.5 429 87.9
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 6.0e-235 817.4 400 95.8
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 1.1e-233 813.1 400 95.0
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 1.1e-233 813.1 399 94.7
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 4.3e-233 811.2 417 91.6
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 1.6e-232 809.3 416 91.6
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 5.4e-228 794.3 422 87.0
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 5.8e-222 774.2 422 83.9
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 7.6e-222 773.9 421 83.6
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 1.1e-220 770.0 377 96.3
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 3.5e-219 765.0 428 82.5
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 1.3e-218 763.1 479 80.0
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 1.5e-209 733.0 380 91.8
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 5.8e-206 721.1 393 90.1
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 1.5e-201 706.4 452 79.0
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 9.0e-191 670.6 346 92.5
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 3.8e-189 665.2 369 88.1
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 3.3e-185 652.1 395 74.9
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 5.9e-174 614.8 308 92.9
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 7.7e-174 614.4 479 68.9
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.8e-165 585.5 479 66.8
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.5e-164 583.6 479 66.6
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 1.5e-164 583.6 331 87.9
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.0e-162 575.9 480 65.6
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.1e-148 530.8 279 90.3
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 3.3e-140 502.7 351 71.8
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 6.0e-126 455.3 276 74.3
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 3.4e-113 412.9 203 95.6
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 2.4e-98 363.6 180 91.1
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 1.3e-96 357.8 220 78.6
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 3.1e-90 336.7 165 94.5
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 7.1e-87 325.5 163 90.8
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 2.7e-78 297.0 478 40.6
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 6.3e-75 285.8 146 90.4
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 5.7e-68 262.7 146 86.3
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 3.4e-65 253.4 136 94.9
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 2.5e-63 247.3 127 86.6
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 5.1e-61 239.6 120 93.3
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 2.9e-56 223.8 147 83.0
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 1.2e-54 218.4 284 41.9
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 8.2e-51 205.7 100 94.0
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 5.3e-50 203.0 102 93.1
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 2.6e-44 184.1 127 76.4
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 8.3e-35 152.5 102 73.5
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 1.6e-33 148.3 108 71.3
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 4.3e-31 140.2 69 92.8
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 4.3e-31 140.2 69 92.8
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 5.2e-29 133.3 197 37.6
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 8.3e-27 125.9 65 92.3
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 8.3e-27 125.9 65 92.3
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 1.2e-25 122.1 61 93.4
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 5.9e-25 119.8 62 88.7
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 6.6e-24 116.3 62 85.5
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.2e-22 112.1 58 87.9
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.8e-22 110.9 58 86.2
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 6.2e-22 109.8 65 80.0
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 2.3e-21 107.8 67 70.1
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 2.0e-20 104.8 65 73.8
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 7.8e-17 92.8 48 89.6
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 5.6e-15 86.7 168 36.9
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 3.1e-13 80.9 71 56.3
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 1.5e-12 78.6 72 55.6
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 3.4e-12 77.4 72 55.6
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 1.2e-09 68.9 61 57.4
Duzib052G0593 Durio zibethinus HOM05D000222 ORTHO05D001350 2.1e-06 58.2 40 67.5
Nitab4.5_0027010g0010 Nicotiana tabacum HOM05D003867 ORTHO05D004593 4.7e-06 57.0 61 65.6


User provided reference genes

Program Settings