Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0009800 Simmondsia chinensis HOM05D001304 ORTHO05D008890 6.9e-125 450.7 232 100.0
AUR62005553 Chenopodium quinoa HOM05D001304 ORTHO05D008890 1.0e-83 313.9 235 73.2
EL10As2g23248 Beta vulgaris HOM05D001304 ORTHO05D008890 3.0e-83 312.4 231 72.7
Manes.12G017100 Manihot esculenta HOM05D001304 ORTHO05D008890 6.6e-83 311.2 238 71.0
TWI36G0586 Tripterygium wilfordii HOM05D001304 ORTHO05D008890 1.1e-82 310.5 235 68.5
Cc11_g16390 Coffea canephora HOM05D001304 ORTHO05D008890 1.6e-81 306.6 237 68.4
Oeu020321.1 Olea europaea HOM05D001304 ORTHO05D008890 1.6e-81 306.6 233 70.8
CARHR060290 Cardamine hirsuta HOM05D001304 ORTHO05D008890 2.1e-81 306.2 241 68.0
Dinv11009 Davidia involucrata HOM05D001304 ORTHO05D008890 2.8e-81 305.8 236 70.8
AUR62024180 Chenopodium quinoa HOM05D001304 ORTHO05D008890 3.6e-81 305.4 235 69.8
PGR119G0865 Punica granatum HOM05D001304 ORTHO05D008890 3.6e-81 305.4 240 68.8
A07p32450 Brassica napus HOM05D001304 ORTHO05D008890 6.2e-81 304.7 223 70.9
BraA07t30869Z Brassica rapa HOM05D001304 ORTHO05D008890 6.2e-81 304.7 223 70.9
AL2G26400 Arabidopsis lyrata HOM05D001304 ORTHO05D008890 1.1e-80 303.9 233 69.1
AT1G67700 Arabidopsis thaliana HOM05D001304 ORTHO05D008890 1.1e-80 303.9 233 69.1
Carub.0002s1413 Capsella rubella HOM05D001304 ORTHO05D008890 1.1e-80 303.9 233 69.1
Thhalv10019020m.g Eutrema salsugineum HOM05D001304 ORTHO05D008890 1.1e-80 303.9 235 68.1
Sp5g22690 Schrenkiella parvula HOM05D001304 ORTHO05D008890 1.1e-80 303.9 232 69.0
Ciclev10032669m.g Citrus clementina HOM05D001304 ORTHO05D008890 1.4e-80 303.5 230 69.1
BcaC08g46045 Brassica carinata HOM05D001304 ORTHO05D008890 1.8e-80 303.1 223 70.9
C06p38480 Brassica napus HOM05D001304 ORTHO05D008890 1.8e-80 303.1 223 70.9
SGA_v2.0_scaffold484G52361 Striga asiatica HOM05D001304 ORTHO05D008890 4.0e-80 302.0 237 67.1
TAR622G1249 Trochodendron aralioides HOM05D001304 ORTHO05D008890 4.0e-80 302.0 235 68.9
SalBow2G0118 Salvia bowleyana HOM05D001304 ORTHO05D008890 8.9e-80 300.8 225 69.8
Sabra10G0017000 Salix brachista HOM05D001304 ORTHO05D008890 1.2e-79 300.4 228 70.2
BcaB03g15175 Brassica carinata HOM05D001304 ORTHO05D008890 1.5e-79 300.1 235 68.1
PGSC0003DMG400017453 Solanum tuberosum HOM05D001304 ORTHO05D008890 1.5e-79 300.1 235 68.1
BcaC08g46187 Brassica carinata HOM05D001304 ORTHO05D008890 2.0e-79 299.7 236 67.8
Prupe.1G237600 Prunus persica HOM05D001304 ORTHO05D008890 2.0e-79 299.7 236 66.9
Potri.010G053600 Populus trichocarpa HOM05D001304 ORTHO05D008890 2.6e-79 299.3 228 69.7
Ah.02g130500 Amaranthus hybridus HOM05D001304 ORTHO05D008890 3.4e-79 298.9 218 71.6
COL.COLO4_23565 Corchorus olitorius HOM05D001304 ORTHO05D008890 4.4e-79 298.5 239 66.5
Eucgr.H04690 Eucalyptus grandis HOM05D001304 ORTHO05D008890 7.5e-79 297.7 243 68.7
C06p42370 Brassica napus HOM05D001304 ORTHO05D007800 9.8e-79 297.4 232 68.1
Sopen05g009420 Solanum pennellii HOM05D001304 ORTHO05D008890 9.8e-79 297.4 235 67.2
MSTRG.7966 Avicennia marina HOM05D001304 ORTHO05D008890 1.7e-78 296.6 224 69.6
Glyma.11G246700 Glycine max HOM05D001304 ORTHO05D008890 1.7e-78 296.6 242 66.5
Haze_12318 Corylus avellana HOM05D001304 ORTHO05D008890 2.2e-78 296.2 235 66.8
FvH4_4g24830 Fragaria vesca HOM05D001304 ORTHO05D008890 2.2e-78 296.2 235 65.1
Solyc05g014310.3 Solanum lycopersicum HOM05D001304 ORTHO05D008890 2.2e-78 296.2 222 70.7
VMungo1383G0240 Vigna mungo HOM05D001304 ORTHO05D008890 2.9e-78 295.8 237 67.5
MD13G1108600 Malus domestica HOM05D001304 ORTHO05D008890 8.3e-78 294.3 238 66.0
Actinidia15135 Actinidia chinensis HOM05D001304 ORTHO05D008890 1.1e-77 293.9 235 68.5
FAN22G1346 Fragaria x ananassa HOM05D001304 ORTHO05D008890 1.1e-77 293.9 232 64.7
THA.LOC104825532 Tarenaya hassleriana HOM05D001304 ORTHO05D008890 1.4e-77 293.5 231 67.5
Nitab4.5_0000041g0390 Nicotiana tabacum HOM05D001304 ORTHO05D008890 1.9e-77 293.1 226 69.9
Peaxi162Scf00128g00729 Petunia axillaris HOM05D001304 ORTHO05D008890 2.4e-77 292.7 228 70.2
RcHm_v2.0_Chr4g0431911 Rosa chinensis HOM05D001304 ORTHO05D008890 2.4e-77 292.7 235 64.7
Aa31LG4G12100 Aethionema arabicum HOM05D001304 ORTHO05D008890 3.2e-77 292.4 233 67.0
Migut.K00680 Erythranthe guttata HOM05D001304 ORTHO05D008890 3.2e-77 292.4 248 64.9
FAN12G0763 Fragaria x ananassa HOM05D001304 ORTHO05D008890 3.2e-77 292.4 231 64.9
Phvul.001G258300 Phaseolus vulgaris HOM05D001304 ORTHO05D008890 3.2e-77 292.4 233 68.7
FAN07G1515 Fragaria x ananassa HOM05D001304 ORTHO05D008890 4.1e-77 292.0 231 64.9
CsaV3_2G025190 Cucumis sativus L. HOM05D001304 ORTHO05D008890 5.4e-77 291.6 234 67.5
FAN17G2678 Fragaria x ananassa HOM05D001304 ORTHO05D008890 9.2e-77 290.8 231 64.9
Gohir.D04G181000 Gossypium hirsutum HOM05D001304 ORTHO05D008890 1.2e-76 290.4 237 66.7
arahy.Tifrunner.gnm1.ann1.VHC2JK Arachis hypogaea HOM05D001304 ORTHO05D008890 1.7e-75 286.6 240 63.3
Hund06057 Selenicereus undatus HOM05D001304 ORTHO05D008890 1.7e-75 286.6 235 67.2
CDE02G1129 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 2.3e-75 286.2 227 67.8
Aqoxy5G03572 Aquilegia oxysepala HOM05D001304 ORTHO05D008890 3.0e-75 285.8 235 66.0
Cfa009288 Carpinus fangiana HOM05D001304 ORTHO05D008890 3.9e-75 285.4 231 65.8
CANSAT01G0179 Cannabis sativa HOM05D001304 ORTHO05D008890 1.5e-74 283.5 240 63.3
CiPaw.05G174500 Carya illinoinensis HOM05D001304 ORTHO05D008890 2.5e-74 282.7 187 77.0
Ca_16494_v3 Cicer arietinum L. HOM05D001304 ORTHO05D008890 2.5e-74 282.7 216 70.8
BolC6t39193H Brassica oleracea HOM05D001304 ORTHO05D007800 5.6e-74 281.6 261 59.8
Sed0004969 Sechium edule HOM05D001304 ORTHO05D008890 9.5e-74 280.8 236 65.7
unitig_8.g2912 Utricularia gibba HOM05D000468 ORTHO05D008890 1.2e-73 280.4 233 63.1
PSO782G0777 Papaver somniferum HOM05D001304 ORTHO05D008890 3.6e-73 278.9 235 63.0
Nitab4.5_0001318g0090 Nicotiana tabacum HOM05D001304 ORTHO05D008890 1.1e-72 277.3 224 68.8
PSO063G7645 Papaver somniferum HOM05D001304 ORTHO05D008890 1.8e-72 276.6 235 62.6
CDE09G0600 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 5.2e-72 275.0 227 67.0
Rhsim12G0107100 Rhododendron simsii HOM05D001304 ORTHO05D008890 2.6e-71 272.7 232 64.7
ECA233G5962 Erigeron canadensis HOM05D000468 ORTHO05D000548 3.2e-69 265.8 197 66.0
Atru.chr11.2216 Acer truncatum HOM05D001304 ORTHO05D008890 7.1e-69 264.6 201 69.2
Gohir.A04G137800 Gossypium hirsutum HOM05D001304 ORTHO05D008890 2.7e-68 262.7 237 61.6
Gorai.012G174200 Gossypium raimondii HOM05D001304 ORTHO05D008890 1.9e-66 256.5 237 60.8
Thecc.02G270700 Theobroma cacao HOM05D001304 ORTHO05D008890 1.9e-66 256.5 242 59.9
ATR0824G252 Amborella trichopoda HOM05D001304 ORTHO05D008890 4.3e-66 255.4 236 58.5
Duzib251G0230 Durio zibethinus HOM05D001304 ORTHO05D008890 4.3e-66 255.4 242 59.9
Lj6g0017703 Lotus japonicus HOM05D001304 ORTHO05D008890 5.6e-66 255.0 230 60.0
Lj6C819T3 Lonicera japonica HOM05D001304 ORTHO05D008890 9.5e-66 254.2 237 60.8
Lalb_Chr08g0230761 Lupinus albus HOM05D001304 ORTHO05D008890 1.4e-64 250.4 236 57.6
Cpa.g.c30628.2 Carica papaya HOM05D001304 ORTHO05D008890 3.1e-64 249.2 228 59.6
HanXRQChr08g0207321 Helianthus annuus HOM05D001304 ORTHO05D008890 4.0e-64 248.8 180 68.9
Zm00001eb246340 Zea mays HOM05D001304 ORTHO05D008890 9.2e-61 237.7 193 63.2
CDE04G1632 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 3.0e-59 232.6 222 55.4
HPP92_004594 Vanilla planifolia HOM05D001304 ORTHO05D008890 6.6e-59 231.5 167 69.5
Os02g0600200 Oryza sativa ssp. japonica HOM05D001304 ORTHO05D008890 1.5e-58 230.3 198 62.6
Actinidia24567 Actinidia chinensis HOM05D001304 ORTHO05D008890 3.3e-58 229.2 235 56.2
Medtr3g086040 Medicago truncatula HOM05D001304 ORTHO05D008890 8.1e-57 224.6 229 53.7
Lsat_1_v5_gn_8_150960 Lactuca sativa HOM05D001304 ORTHO05D008890 6.9e-56 221.5 241 55.2
Hma1.2p1_0079F.1_g041530 Hydrangea macrophylla HOM05D001304 ORTHO05D008890 1.5e-55 220.3 230 56.1
GSVIVG01010306001 Vitis vinifera HOM05D001304 ORTHO05D008890 5.8e-55 218.4 147 74.1
TPR.G33410 Trifolium pratense HOM05D001304 ORTHO05D008890 7.6e-55 218.0 226 52.7
CSS0032412 Camellia sinensis var. sinensis HOM05D000063 ORTHO05D008721 8.4e-54 214.5 143 74.1
vmacro16148 Vaccinium macrocarpon HOM05D001304 ORTHO05D008890 2.4e-53 213.0 140 74.3
TAR629G1650 Trochodendron aralioides HOM05D001304 ORTHO05D008890 1.3e-49 200.7 140 72.9
BolC6t38945H Brassica oleracea HOM05D001304 ORTHO05D008890 5.4e-45 185.3 118 77.1
SEGI_40444 Sequoiadendron giganteum HOM05D001304 ORTHO05D008890 3.3e-42 176.0 252 43.7
MELO3C010716.2 Cucumis melo HOM05D001304 ORTHO05D008890 2.8e-41 172.9 136 69.1
AagrBONN_evm.TU.Sc2ySwM_368.469 Anthoceros agrestis HOM05D001304 ORTHO05D008890 1.8e-40 170.2 194 47.4
Pp3c14_9580 Physcomitrium patens HOM05D001304 ORTHO05D008890 4.0e-40 169.1 189 46.0
Psat5g093920 Pisum sativum HOM05D001304 ORTHO05D008890 2.0e-39 166.8 95 77.9
arahy.Tifrunner.gnm1.ann1.Q18UTF Arachis hypogaea HOM05D001304 ORTHO05D008890 3.4e-39 166.0 236 46.2
Mapoly0101s0039 Marchantia polymorpha HOM05D001304 ORTHO05D008890 1.0e-35 154.5 211 39.3
Cfa021197 Carpinus fangiana HOM05D001304 ORTHO05D008890 6.7e-35 151.8 137 61.3
DCAR_026486 Daucus carota HOM05D000468 ORTHO05D008890 1.5e-34 150.6 140 58.6
Duzib248G0877 Durio zibethinus HOM05D001304 ORTHO05D008890 1.1e-32 144.4 229 42.8
CBR_g28672 Chara braunii HOM05D001304 ORTHO05D008890 1.8e-32 143.7 184 40.8
SMO367G0665 Selaginella moellendorffii HOM05D001304 ORTHO05D008890 5.8e-31 138.7 163 44.8
MBI06_g05241_MAGBIO Magnolia biondii HOM05D001304 ORTHO05D008890 7.6e-23 111.7 233 38.6
Oeu009356.1 Olea europaea HOM05D001304 ORTHO05D008890 5.5e-21 105.5 57 86.0
ClCG08G017440 Citrullus lanatus HOM05D001304 ORTHO05D008890 1.8e-16 90.5 90 57.8
vmacro16147 Vaccinium macrocarpon HOM05D001304 ORTHO05D008890 1.1e-13 81.3 92 53.3
MCO01G115 Micromonas commoda HOM05D001304 ORTHO05D008890 1.6e-12 77.4 166 28.3
Ah.03g133980 Amaranthus hybridus HOM05D007778 ORTHO05D009819 1.8e-11 73.9 228 30.3
PRCOL_00000361 Prasinoderma coloniale HOM05D001304 ORTHO05D008890 4.4e-10 69.3 156 25.0
Cre03.g146167 Chlamydomonas reinhardtii HOM05D001304 ORTHO05D008890 1.2e-07 61.2 178 25.3


User provided reference genes

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