Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 0.0e+00 1128.6 635 100.0
AUR62024231 Chenopodium quinoa HOM05D003570 ORTHO05D004207 1.9e-169 600.1 658 54.1
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 1.0e-162 577.8 656 54.0
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 9.0e-159 564.7 654 53.4
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 1.9e-156 557.0 651 52.7
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 7.9e-155 551.6 666 49.2
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 1.1e-153 547.7 642 51.4
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 7.4e-153 545.0 659 52.2
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 4.8e-152 542.3 650 47.2
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 1.4e-151 540.8 651 53.6
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 1.8e-151 540.4 644 50.2
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 9.1e-151 538.1 658 50.6
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 9.1e-151 538.1 654 51.2
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 9.1e-151 538.1 644 52.0
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 9.1e-151 538.1 637 53.1
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 7.7e-150 535.0 656 49.4
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 6.5e-149 531.9 648 50.5
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 4.2e-148 529.3 650 51.1
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 9.4e-148 528.1 675 45.3
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 1.0e-146 524.6 645 52.6
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 1.1e-145 521.2 649 51.5
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 2.8e-144 516.5 650 49.2
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 3.7e-144 516.2 646 49.7
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 1.8e-143 513.8 638 51.9
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 3.1e-143 513.1 659 48.7
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 2.0e-142 510.4 650 50.0
AUR62005511 Chenopodium quinoa HOM05D003570 ORTHO05D004207 2.2e-141 506.9 642 49.7
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 1.1e-140 504.6 661 45.7
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 1.6e-139 500.7 638 48.4
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 1.4e-138 497.7 635 50.7
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 4.1e-135 486.1 639 47.7
Atru.chr11.2174 Acer truncatum HOM05D003570 ORTHO05D004207 9.1e-135 485.0 654 48.5
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 1.6e-134 484.2 627 51.5
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 3.5e-134 483.0 635 51.0
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 7.7e-134 481.9 643 43.7
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 1.5e-132 477.6 620 47.6
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 5.5e-132 475.7 627 49.8
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 2.7e-131 473.4 627 50.2
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 6.1e-131 472.2 632 47.5
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 8.0e-131 471.9 630 50.0
Nitab4.5_0001978g0070 Nicotiana tabacum HOM05D003570 ORTHO05D004207 2.3e-130 470.3 705 41.6
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.0e-130 469.5 627 49.9
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.5e-129 467.6 653 49.2
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 2.6e-129 466.8 634 47.3
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 2.6e-129 466.8 645 48.5
PSO063G4933 Papaver somniferum HOM05D003570 ORTHO05D004207 3.3e-129 466.5 648 47.2
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 4.4e-129 466.1 657 44.3
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 1.3e-128 464.5 627 49.6
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 2.8e-128 463.4 640 48.6
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 3.7e-128 463.0 640 47.2
Lj6A815G40 Lonicera japonica HOM05D003570 ORTHO05D004207 4.8e-128 462.6 477 56.4
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 4.8e-128 462.6 672 47.0
PSO339G2835 Papaver somniferum HOM05D003570 ORTHO05D004207 1.8e-127 460.7 648 47.1
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 2.7e-126 456.8 638 48.4
ClCG05G026050 Citrullus lanatus HOM05D003570 ORTHO05D004207 1.1e-124 451.4 659 44.8
Aqoxy7G03799 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 4.2e-124 449.5 648 49.5
MD13G1104500 Malus domestica HOM05D003570 ORTHO05D004207 4.2e-124 449.5 577 52.2
MELO3C011924.2 Cucumis melo HOM05D003570 ORTHO05D004207 7.2e-124 448.7 683 44.7
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 7.2e-124 448.7 638 48.3
SGA_v2.0_scaffold22G09799 Striga asiatica HOM05D003570 ORTHO05D004207 8.0e-123 445.3 633 47.1
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 2.3e-122 443.7 650 47.8
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 5.2e-122 442.6 556 51.1
EL10As2g23162 Beta vulgaris HOM05D003570 ORTHO05D004207 8.8e-122 441.8 493 57.0
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 8.8e-122 441.8 632 46.4
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.8e-120 436.8 649 42.7
Lalb_Chr08g0230861 Lupinus albus HOM05D003570 ORTHO05D004207 2.4e-119 433.7 541 52.3
MSTRG.553 Avicennia marina HOM05D003570 ORTHO05D004207 5.4e-119 432.6 630 45.9
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 5.4e-119 432.6 628 45.2
Medtr3g086460 Medicago truncatula HOM05D003570 ORTHO05D004207 2.0e-118 430.6 633 46.6
Cc11_g16040 Coffea canephora HOM05D003570 ORTHO05D004207 1.3e-117 427.9 624 45.8
Sed0006332 Sechium edule HOM05D003570 ORTHO05D004207 3.8e-117 426.4 590 47.8
COL.COLO4_27904 Corchorus olitorius HOM05D003570 ORTHO05D004207 5.0e-117 426.0 664 41.3
QL03p056953 Quercus lobata HOM05D003570 ORTHO05D004207 1.6e-110 404.4 617 47.2
ATR0824G009 Amborella trichopoda HOM05D003570 ORTHO05D004207 4.5e-110 402.9 621 42.4
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 4.4e-105 386.3 640 43.8
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 7.5e-105 385.6 662 40.2
CiPaw.02G032100 Carya illinoinensis HOM05D003570 ORTHO05D004207 9.8e-105 385.2 647 45.4
Carub.0001s1286 Capsella rubella HOM05D003570 ORTHO05D004207 1.7e-104 384.4 650 42.6
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 4.9e-104 382.9 655 39.8
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 2.4e-103 380.6 627 44.5
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 7.0e-103 379.0 664 42.6
Lj3A151T25 Lonicera japonica HOM05D003570 ORTHO05D004207 5.0e-101 372.9 341 55.1
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 7.3e-100 369.0 644 42.1
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 3.6e-99 366.7 649 42.8
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 3.6e-99 366.7 637 43.8
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 1.4e-98 364.8 660 42.3
PSO063G3251 Papaver somniferum HOM05D003570 ORTHO05D004207 8.9e-98 362.1 651 38.4
Aa31LG1G1680 Aethionema arabicum HOM05D003570 ORTHO05D004207 3.9e-93 346.7 660 39.4
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 1.5e-92 344.7 648 38.1
SEGI_05718 Sequoiadendron giganteum HOM05D003570 ORTHO05D004207 1.5e-92 344.7 617 40.0
PSO754G0035 Papaver somniferum HOM05D003570 ORTHO05D004207 8.9e-90 335.5 319 53.3
Os02g0596100 Oryza sativa ssp. japonica HOM05D003570 ORTHO05D004207 1.2e-89 335.1 628 41.2
PSO063G1535 Papaver somniferum HOM05D003570 ORTHO05D004207 1.5e-89 334.7 330 52.4
SHI04269 Sapria himalayana HOM05D003570 ORTHO05D004207 1.2e-86 325.1 545 38.5
PGSC0003DMG400016968 Solanum tuberosum HOM05D003570 ORTHO05D004207 2.7e-86 323.9 276 54.7
Sabra08G0139700 Salix brachista HOM05D003570 ORTHO05D004207 1.3e-85 321.6 321 53.0
Oeu038646.1 Olea europaea HOM05D003570 ORTHO05D004207 1.9e-84 317.8 436 43.6
Pp3c9_21420 Physcomitrium patens HOM05D003570 ORTHO05D004207 3.3e-84 317.0 609 37.1
vmacro17618 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 9.5e-84 315.5 510 43.7
Zm00001eb062020 Zea mays HOM05D003570 ORTHO05D004207 4.4e-81 306.6 542 38.9
Dinv11043 Davidia involucrata HOM05D003570 ORTHO05D004207 9.9e-81 305.4 468 43.6
Zm00001eb212370 Zea mays HOM05D003570 ORTHO05D004207 1.1e-79 302.0 524 42.7
Hma1.2p1_1533F.1_g289360 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 6.6e-77 292.7 278 49.6
Dinv15203 Davidia involucrata HOM05D003570 ORTHO05D004207 3.6e-75 287.0 237 57.8
Aqoxy5G03688 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 4.7e-75 286.6 242 58.3
Rhsim12G0108000 Rhododendron simsii HOM05D003570 ORTHO05D004207 2.4e-74 284.3 280 52.5
AL6G47680 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 4.0e-74 283.5 609 34.8
Aqoxy1G03220 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 7.3e-68 262.7 310 48.4
Mapoly0004s0250 Marchantia polymorpha HOM05D003570 ORTHO05D004207 1.6e-67 261.5 620 34.7
vmacro16171 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 5.3e-66 256.5 265 51.7
Rhsim12G0107900 Rhododendron simsii HOM05D003570 ORTHO05D004207 1.9e-63 248.1 362 52.5
CBR_g38118 Chara braunii HOM05D003570 ORTHO05D004207 9.0e-58 229.2 717 31.8
SMO367G0645 Selaginella moellendorffii HOM05D003570 ORTHO05D004207 2.0e-57 228.0 634 31.4
vmacro16173 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 3.4e-57 227.3 252 49.2
vmacro16170 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 2.5e-55 221.1 392 42.6
Nitab4.5_0000229g0040 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.3e-51 208.8 255 48.6
FAN08G0154 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.2e-49 202.2 462 36.6
Haze_11814 Corylus avellana HOM05D001314 ORTHO05D001165 1.0e-48 199.1 186 53.8
CDE06G1553 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 2.2e-48 198.0 180 53.3
Nitab4.5_0000229g0020 Nicotiana tabacum HOM05D003570 ORTHO05D004207 7.1e-47 193.0 237 48.1
Haze_20779 Corylus avellana HOM05D003570 ORTHO05D004207 9.3e-47 192.6 231 46.8
vmacro16172 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 1.6e-46 191.8 424 38.2
Thhalv10001133m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 6.0e-46 189.9 593 30.4
unitig_22.g6426 Utricularia gibba HOM05D003570 ORTHO05D004207 7.4e-44 183.0 178 48.9
CSS0045431 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 3.1e-42 177.6 157 55.4
CSS0031984 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 8.8e-37 159.5 229 43.2
Sopen04g013730 Solanum pennellii HOM05D003570 ORTHO05D004207 8.2e-35 152.9 122 55.7
EL10Ac8g19584 Beta vulgaris HOM05D003570 ORTHO05D004207 1.1e-34 152.5 113 64.6
AagrBONN_evm.TU.Sc2ySwM_362.2178 Anthoceros agrestis HOM05D003570 ORTHO05D004207 1.8e-34 151.8 170 41.2
FAN13G1935 Fragaria x ananassa HOM05D003570 ORTHO05D004207 3.8e-32 144.1 383 40.2
MCO05G059 Micromonas commoda HOM05D003570 ORTHO05D004207 3.8e-32 144.1 326 30.1
Aqoxy5G03687 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 8.5e-32 142.9 247 42.5
Cre06.g300900 Chlamydomonas reinhardtii HOM05D003570 ORTHO05D004207 2.1e-30 138.3 305 31.8
Lj3A151T24 Lonicera japonica HOM05D003570 ORTHO05D004207 2.1e-30 138.3 181 50.3
Medtr7g034350 Medicago truncatula HOM05D003570 ORTHO05D004207 2.3e-29 134.8 187 42.8
TAR374G0522 Trochodendron aralioides HOM05D003570 ORTHO05D004207 3.3e-28 131.0 100 64.0
EL10As2g23164 Beta vulgaris HOM05D003570 ORTHO05D004207 9.7e-28 129.4 156 46.8
Hma1.2p1_1533F.1_g289350 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 1.4e-26 125.6 147 44.2
PRCOL_00001147 Prasinoderma coloniale HOM05D003570 ORTHO05D004207 1.3e-24 119.0 265 31.7
AL2G22720 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 5.0e-24 117.1 142 50.7
CDE06G0651 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 5.5e-23 113.6 270 36.3
Hma1.2p1_0054F.1_g030990 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 1.6e-22 112.1 89 52.8
FAN08G3485 Fragaria x ananassa HOM05D003570 ORTHO05D004207 6.1e-22 110.2 123 46.3
AT4G05523 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 1.0e-21 109.4 205 33.7
TAR374G0931 Trochodendron aralioides HOM05D003570 ORTHO05D004207 1.8e-21 108.6 134 48.5
BolC4t26878H Brassica oleracea HOM05D003570 ORTHO05D004207 2.3e-21 108.2 202 34.2
AagrBONN_evm.TU.Sc2ySwM_344.4464 Anthoceros agrestis HOM05D003570 ORTHO05D004207 5.2e-21 107.1 470 29.8
BcaC05g25085 Brassica carinata HOM05D003570 ORTHO05D004207 6.7e-21 106.7 253 34.4
A07p19900 Brassica napus HOM05D003570 ORTHO05D004207 5.7e-20 103.6 202 32.7
BcaC02g08536 Brassica carinata HOM05D003570 ORTHO05D004207 6.3e-19 100.1 170 35.3
BolC5t29767H Brassica oleracea HOM05D003570 ORTHO05D004207 6.3e-19 100.1 297 27.9
Glyma.18G013000 Glycine max HOM05D003570 ORTHO05D004207 2.0e-17 95.1 83 53.0
BcaC05g25084 Brassica carinata HOM05D003570 ORTHO05D004207 5.9e-17 93.6 183 34.4
A07p18160 Brassica napus HOM05D003570 ORTHO05D004207 5.9e-17 93.6 195 30.3
BraA01t00580Z Brassica rapa HOM05D003570 ORTHO05D004207 5.9e-17 93.6 195 30.3
BcaC06g34341 Brassica carinata HOM05D003570 ORTHO05D004207 7.7e-17 93.2 195 33.3
unitig_22.g6425 Utricularia gibba HOM05D003570 ORTHO05D004207 1.0e-16 92.8 192 35.9
C04p53310 Brassica napus HOM05D003570 ORTHO05D004207 1.7e-16 92.0 206 31.6
Actinidia15112 Actinidia chinensis HOM05D003570 ORTHO05D004207 3.0e-13 81.3 85 47.1
FvH4_5g15750 Fragaria vesca HOM05D003570 ORTHO05D004207 5.2e-13 80.5 71 62.0
C04p53220 Brassica napus HOM05D003570 ORTHO05D004207 4.4e-12 77.4 156 31.4
PSO063G3896 Papaver somniferum HOM05D003570 ORTHO05D004207 5.7e-12 77.0 233 30.5
AL2G22730 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 1.3e-11 75.9 123 36.6
Actinidia15111 Actinidia chinensis HOM05D003570 ORTHO05D004207 2.8e-11 74.7 84 45.2
Sp2g10400 Schrenkiella parvula HOM05D003570 ORTHO05D004207 2.8e-11 74.7 108 41.7
CAN.G294.19 Capsicum annuum HOM05D003570 ORTHO05D004207 2.4e-10 71.6 89 53.9
EL10Ac1g01653 Beta vulgaris HOM05D003570 ORTHO05D004207 3.5e-09 67.8 49 65.3
MD05G1151500 Malus domestica HOM05D003570 ORTHO05D004207 4.5e-09 67.4 49 63.3
FAN18G0384 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.0e-08 66.2 162 31.5
FvH4_5g15741 Fragaria vesca HOM05D003570 ORTHO05D004207 1.3e-08 65.9 162 32.7
C05p10220 Brassica napus HOM05D003570 ORTHO05D004207 2.9e-08 64.7 119 30.3
Hund04894 Selenicereus undatus HOM05D003570 ORTHO05D004207 8.5e-08 63.2 68 50.0
CARHR253470 Cardamine hirsuta HOM05D003570 ORTHO05D004207 2.5e-07 61.6 159 31.4
C07p30170 Brassica napus HOM05D003570 ORTHO05D004207 5.5e-07 60.5 70 44.3
CDE06G1606 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 5.5e-07 60.5 108 34.3
Solyc04g026000.2 Solanum lycopersicum HOM05D003570 ORTHO05D004207 7.2e-07 60.1 133 31.6
C07p30160 Brassica napus HOM05D003570 ORTHO05D004207 2.1e-06 58.5 78 41.0
CAN.G149.33 Capsicum annuum HOM05D001546 ORTHO05D015824 4.7e-06 57.4 74 40.5


User provided reference genes

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