Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0009560 Simmondsia chinensis HOM05D005449 ORTHO05D006916 3.1e-73 278.5 150 100.0
Ah.08g213380 Amaranthus hybridus HOM05D005449 ORTHO05D006916 2.1e-42 176.0 133 69.9
EL10Ac7g17526 Beta vulgaris HOM05D005449 ORTHO05D006916 6.2e-42 174.5 142 68.3
Potri.014G127900 Populus trichocarpa HOM05D005449 ORTHO05D006916 6.9e-41 171.0 150 64.0
Prupe.8G140700 Prunus persica HOM05D005449 ORTHO05D006916 1.5e-40 169.9 150 60.7
Cfa005902 Carpinus fangiana HOM05D005449 ORTHO05D006916 2.6e-40 169.1 146 62.3
Hma1.2p1_1986F.1_g310070 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 3.4e-40 168.7 146 63.0
Hma1.2p1_2044F.1_g312372 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 3.4e-40 168.7 146 63.0
SGA_v2.0_scaffold1G00359 Striga asiatica HOM05D005449 ORTHO05D006916 3.4e-40 168.7 118 73.7
Manes.05G061600 Manihot esculenta HOM05D005449 ORTHO05D006916 5.8e-40 167.9 151 61.6
Hund11156 Selenicereus undatus HOM05D005449 ORTHO05D006916 5.8e-40 167.9 155 62.6
CANSAT25G1565 Cannabis sativa HOM05D005449 ORTHO05D006916 1.3e-39 166.8 133 68.4
Phvul.002G266700 Phaseolus vulgaris HOM05D005449 ORTHO05D006916 1.3e-39 166.8 150 62.7
CSS0004919 Camellia sinensis var. sinensis HOM05D005449 ORTHO05D006916 2.2e-39 166.0 146 62.3
Dinv44016 Davidia involucrata HOM05D005449 ORTHO05D006916 2.2e-39 166.0 144 63.9
Glyma.05G185600 Glycine max HOM05D005449 ORTHO05D006916 2.2e-39 166.0 150 60.7
THA.LOC104817488 Tarenaya hassleriana HOM05D005449 ORTHO05D006916 2.2e-39 166.0 118 71.2
MELO3C017987.2 Cucumis melo HOM05D005449 ORTHO05D006916 2.9e-39 165.6 146 63.0
Medtr8g092180 Medicago truncatula HOM05D005449 ORTHO05D006916 2.9e-39 165.6 150 62.0
Lj4g0006553 Lotus japonicus HOM05D005449 ORTHO05D006916 3.8e-39 165.2 150 63.3
Dinv33060 Davidia involucrata HOM05D005449 ORTHO05D006916 4.9e-39 164.9 150 62.7
FAN15G2928 Fragaria x ananassa HOM05D005449 ORTHO05D006916 4.9e-39 164.9 131 65.6
Rhsim06G0059700 Rhododendron simsii HOM05D005449 ORTHO05D006916 4.9e-39 164.9 142 61.3
CsaV3_4G000480 Cucumis sativus L. HOM05D005449 ORTHO05D006916 6.4e-39 164.5 146 63.0
CiPaw.07G110200 Carya illinoinensis HOM05D005449 ORTHO05D006916 1.4e-38 163.3 146 62.3
DCAR_002842 Daucus carota HOM05D005449 ORTHO05D006916 1.4e-38 163.3 150 61.3
HanXRQChr06g0163691 Helianthus annuus HOM05D005449 ORTHO05D006916 1.9e-38 162.9 118 71.2
Nn3g21512 Nelumbo nucifera HOM05D005449 ORTHO05D006916 1.9e-38 162.9 141 63.8
Sabra14G0095000 Salix brachista HOM05D005449 ORTHO05D006916 1.9e-38 162.9 116 72.4
FAN20G1025 Fragaria x ananassa HOM05D005449 ORTHO05D006916 2.4e-38 162.5 145 63.4
QL12p028306 Quercus lobata HOM05D005449 ORTHO05D006916 2.4e-38 162.5 145 60.0
Cc01_g20940 Coffea canephora HOM05D005449 ORTHO05D006916 4.2e-38 161.8 150 61.3
Migut.D00146 Erythranthe guttata HOM05D005449 ORTHO05D006916 4.2e-38 161.8 150 61.3
FvH4_2g03920 Fragaria vesca HOM05D005449 ORTHO05D006916 4.2e-38 161.8 145 63.4
TWI14G0435 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 4.2e-38 161.8 135 64.4
Ca_17681_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 7.1e-38 161.0 150 61.3
Ca_29605_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 7.1e-38 161.0 150 61.3
MSTRG.21637 Avicennia marina HOM05D005449 ORTHO05D006916 9.3e-38 160.6 150 61.3
COL.COLO4_23333 Corchorus olitorius HOM05D005449 ORTHO05D006916 9.3e-38 160.6 144 63.2
Eucgr.F02473 Eucalyptus grandis HOM05D005449 ORTHO05D006916 9.3e-38 160.6 146 63.0
MD05G1096300 Malus domestica HOM05D005449 ORTHO05D006916 9.3e-38 160.6 150 60.7
RcHm_v2.0_Chr6g0252941 Rosa chinensis HOM05D005449 ORTHO05D006916 1.2e-37 160.2 118 70.3
RcHm_v2.0_Chr6g0252971 Rosa chinensis HOM05D005449 ORTHO05D006916 1.2e-37 160.2 145 63.4
Thecc.01G301700 Theobroma cacao HOM05D005449 ORTHO05D006916 1.6e-37 159.8 144 61.1
arahy.Tifrunner.gnm1.ann1.X8E93Z Arachis hypogaea HOM05D005449 ORTHO05D006916 2.1e-37 159.5 150 60.7
arahy.Tifrunner.gnm1.ann1.YB8ZH2 Arachis hypogaea HOM05D005449 ORTHO05D006916 2.1e-37 159.5 150 60.7
ECA236G0849 Erigeron canadensis HOM05D005449 ORTHO05D006916 2.1e-37 159.5 118 70.3
Oeu054120.1 Olea europaea HOM05D005449 ORTHO05D006916 2.1e-37 159.5 150 61.3
TAR636G0282 Trochodendron aralioides HOM05D005449 ORTHO05D006916 2.1e-37 159.5 146 61.0
FAN22G2041 Fragaria x ananassa HOM05D005449 ORTHO05D006916 3.5e-37 158.7 118 67.8
FAN27G2298 Fragaria x ananassa HOM05D005449 ORTHO05D006916 3.5e-37 158.7 145 62.1
Duzib138G1099 Durio zibethinus HOM05D005449 ORTHO05D006916 4.6e-37 158.3 144 61.1
Lalb_Chr03g0036381 Lupinus albus HOM05D005449 ORTHO05D006916 4.6e-37 158.3 128 65.6
FvH4_4g11510 Fragaria vesca HOM05D005449 ORTHO05D006916 6.0e-37 157.9 118 66.9
Aqoxy1G00207 Aquilegia oxysepala HOM05D005449 ORTHO05D006916 7.9e-37 157.5 141 61.7
Ciclev10022754m.g Citrus clementina HOM05D005449 ORTHO05D006916 1.0e-36 157.1 146 61.6
Sed0024679 Sechium edule HOM05D005449 ORTHO05D006916 1.0e-36 157.1 150 61.3
Lsat_1_v5_gn_8_164201 Lactuca sativa HOM05D005449 ORTHO05D006916 1.3e-36 156.8 140 62.1
CDE05G2918 Ceratophyllum demersum HOM05D005449 ORTHO05D006916 1.8e-36 156.4 149 59.1
Gohir.D12G133700 Gossypium hirsutum HOM05D005449 ORTHO05D006916 1.8e-36 156.4 144 61.1
Gorai.008G144700 Gossypium raimondii HOM05D005449 ORTHO05D006916 1.8e-36 156.4 144 61.1
GSVIVG01028030001 Vitis vinifera HOM05D005449 ORTHO05D006916 1.8e-36 156.4 109 73.4
Duzib211G0575 Durio zibethinus HOM05D005449 ORTHO05D006916 3.0e-36 155.6 132 62.1
Sopen08g023260 Solanum pennellii HOM05D005449 ORTHO05D006916 3.0e-36 155.6 146 61.0
CAN.G857.16 Capsicum annuum HOM05D005449 ORTHO05D006916 5.1e-36 154.8 142 61.3
FAN07G2516 Fragaria x ananassa HOM05D005449 ORTHO05D006916 5.1e-36 154.8 118 66.1
MBI18_g24865_MAGBIO Magnolia biondii HOM05D005449 ORTHO05D006916 5.1e-36 154.8 154 60.4
Nitab4.5_0008438g0020 Nicotiana tabacum HOM05D005449 ORTHO05D006916 5.1e-36 154.8 150 58.7
PGR119G1363 Punica granatum HOM05D005449 ORTHO05D006916 5.1e-36 154.8 142 61.3
Solyc08g074670.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 5.1e-36 154.8 146 60.3
unitig_26.g10174 Utricularia gibba HOM05D005449 ORTHO05D006916 5.1e-36 154.8 150 59.3
TWI59G1340 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 1.1e-35 153.7 146 59.6
Gohir.A12G129900 Gossypium hirsutum HOM05D005449 ORTHO05D006916 1.5e-35 153.3 144 60.4
Cpa.g.sc9.253 Carica papaya HOM05D005449 ORTHO05D006916 1.9e-35 152.9 118 66.9
Oeu024404.1 Olea europaea HOM05D005449 ORTHO05D006916 1.9e-35 152.9 150 58.7
PSO675G2222 Papaver somniferum HOM05D005449 ORTHO05D006916 1.9e-35 152.9 150 58.7
RcHm_v2.0_Chr4g0408421 Rosa chinensis HOM05D005449 ORTHO05D006916 1.9e-35 152.9 118 66.1
vmacro09952 Vaccinium macrocarpon HOM05D005449 ORTHO05D006916 1.9e-35 152.9 168 53.0
CiPaw.08G094600 Carya illinoinensis HOM05D005449 ORTHO05D006916 2.5e-35 152.5 146 56.8
TPR.G2165 Trifolium pratense HOM05D005449 ORTHO05D006916 2.5e-35 152.5 151 58.3
Peaxi162Scf00445g00079 Petunia axillaris HOM05D005449 ORTHO05D006916 3.3e-35 152.1 131 62.6
PGSC0003DMG400018921 Solanum tuberosum HOM05D005449 ORTHO05D006916 3.3e-35 152.1 146 59.6
Actinidia21206 Actinidia chinensis HOM05D005449 ORTHO05D006916 4.3e-35 151.8 142 59.9
ClCG10G010560 Citrullus lanatus HOM05D005449 ORTHO05D006916 4.3e-35 151.8 158 57.0
Os05g0154900 Oryza sativa ssp. japonica HOM05D005449 ORTHO05D006916 4.3e-35 151.8 135 63.0
Sopen08g001890 Solanum pennellii HOM05D005449 ORTHO05D006916 7.4e-35 151.0 150 57.3
Peaxi162Scf00045g01343 Petunia axillaris HOM05D005449 ORTHO05D006916 1.3e-34 150.2 150 57.3
Solyc08g005920.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 3.7e-34 148.7 150 56.7
Glyma.08G143600 Glycine max HOM05D005449 ORTHO05D006916 4.8e-34 148.3 127 60.6
AL5G33630 Arabidopsis lyrata HOM05D005449 ORTHO05D006916 1.4e-33 146.7 119 66.4
Zm00001eb346090 Zea mays HOM05D005449 ORTHO05D006916 1.4e-33 146.7 118 66.9
Nitab4.5_0002276g0010 Nicotiana tabacum HOM05D005449 ORTHO05D006916 1.8e-33 146.4 142 60.6
Psat7g049640 Pisum sativum HOM05D005449 ORTHO05D006916 3.1e-33 145.6 150 56.7
Rhsim09G0186400 Rhododendron simsii HOM05D005449 ORTHO05D006916 3.1e-33 145.6 182 49.5
PGSC0003DMG400004469 Solanum tuberosum HOM05D005449 ORTHO05D006916 5.3e-33 144.8 150 58.0
AUR62008679 Chenopodium quinoa HOM05D005449 ORTHO05D006916 5.8e-32 141.4 149 60.4
Nitab4.5_0000860g0030 Nicotiana tabacum HOM05D005449 ORTHO05D006916 5.8e-32 141.4 150 56.0
VMungo0251G2862 Vigna mungo HOM05D000587 ORTHO05D000929 1.3e-31 140.2 150 55.3
ATR0582G023 Amborella trichopoda HOM05D005449 ORTHO05D006916 2.9e-31 139.0 148 55.4
Lsat_1_v5_gn_7_53001 Lactuca sativa HOM05D005449 ORTHO05D006916 3.0e-28 129.0 124 63.7
SMO367G0046 Selaginella moellendorffii HOM05D005449 ORTHO05D006916 5.1e-28 128.3 118 58.5
HPP92_010681 Vanilla planifolia HOM05D005449 ORTHO05D006916 2.5e-27 125.9 144 54.2
Pp3c14_5880 Physcomitrium patens HOM05D005449 ORTHO05D006916 3.3e-27 125.6 117 58.1
AUR62025565 Chenopodium quinoa HOM05D005449 ORTHO05D006916 4.3e-27 125.2 150 53.3
AT3G52860 Arabidopsis thaliana HOM05D005449 ORTHO05D006916 3.7e-26 122.1 124 59.7
Atru.chr5.1135 Acer truncatum HOM05D005449 ORTHO05D006916 4.8e-26 121.7 108 63.9
BcaB01g00336 Brassica carinata HOM05D005449 ORTHO05D006916 4.8e-26 121.7 119 58.0
A09p45940 Brassica napus HOM05D005449 ORTHO05D006916 8.2e-26 120.9 119 58.0
BolC8t50425H Brassica oleracea HOM05D005449 ORTHO05D006916 8.2e-26 120.9 119 58.0
C08p28130 Brassica napus HOM05D005449 ORTHO05D006916 1.8e-25 119.8 119 58.0
BraA09t40054Z Brassica rapa HOM05D005449 ORTHO05D006916 1.8e-25 119.8 119 58.0
Carub.0005s1933 Capsella rubella HOM05D005449 ORTHO05D006916 3.1e-25 119.0 156 51.3
CARHR162730 Cardamine hirsuta HOM05D005449 ORTHO05D006916 6.9e-25 117.9 156 51.3
Ciclev10033890m.g Citrus clementina HOM05D005449 ORTHO05D006916 1.2e-24 117.1 172 44.8
Thhalv10010784m.g Eutrema salsugineum HOM05D005449 ORTHO05D006916 1.2e-24 117.1 119 57.1
HanXRQChr06g0163731 Helianthus annuus HOM05D005449 ORTHO05D006916 2.0e-24 116.3 75 78.7
Sp5g09480 Schrenkiella parvula HOM05D005449 ORTHO05D006916 2.0e-24 116.3 118 58.5
SEGI_14448 Sequoiadendron giganteum HOM05D005449 ORTHO05D006916 4.5e-24 115.2 131 53.4
RcHm_v2.0_Chr6g0264541 Rosa chinensis HOM05D005449 ORTHO05D006916 1.0e-23 114.0 108 62.0
FvH4_7g29690 Fragaria vesca HOM05D005449 ORTHO05D006916 3.8e-23 112.1 69 81.2
Haze_04950 Corylus avellana HOM05D005449 ORTHO05D006916 7.1e-22 107.8 83 67.5
MD10G1102600 Malus domestica HOM05D005449 ORTHO05D006916 1.6e-21 106.7 85 63.5
HanXRQChr10g0316901 Helianthus annuus HOM05D005449 ORTHO05D006916 6.0e-21 104.8 91 65.9
AagrBONN_evm.TU.Sc2ySwM_117.989 Anthoceros agrestis HOM05D005449 ORTHO05D006916 3.9e-20 102.1 117 50.4
PSO675G2923 Papaver somniferum HOM05D005449 ORTHO05D006916 8.7e-20 100.9 103 57.3
Mapoly0162s0020 Marchantia polymorpha HOM05D005449 ORTHO05D006916 1.9e-19 99.8 110 51.8
Atru.chr11.2437 Acer truncatum HOM05D005449 ORTHO05D006916 5.7e-19 98.2 172 39.5
Actinidia07783 Actinidia chinensis HOM05D005449 ORTHO05D006916 2.9e-15 85.9 73 63.0
Zm00001eb085090 Zea mays HOM05D005449 ORTHO05D006916 5.0e-15 85.1 111 46.8
Zm00001eb340530 Zea mays HOM05D005449 ORTHO05D006916 2.3e-12 76.3 114 44.7
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.4e-09 67.0 70 54.3
BcaC07g39651 Brassica carinata HOM05D001272 ORTHO05D001843 1.2e-08 63.9 85 48.2
Manes.01G220201 Manihot esculenta HOM05D005449 ORTHO05D006916 5.9e-08 61.6 84 44.0
FAN17G0623 Fragaria x ananassa HOM05D005449 ORTHO05D006916 4.2e-06 55.5 63 52.4
Hma1.2p1_0494F.1_g165230 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 7.2e-06 54.7 33 72.7


User provided reference genes

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