Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0009450 Simmondsia chinensis HOM05D006540 ORTHO05D008202 7.5e-180 634.0 393 100.0
Ciclev10032003m.g Citrus clementina HOM05D006540 ORTHO05D008202 2.5e-111 406.4 353 71.7
CiPaw.05G182700 Carya illinoinensis HOM05D006540 ORTHO05D008202 4.1e-109 399.1 351 64.4
Atru.chr11.2104 Acer truncatum HOM05D006540 ORTHO05D008202 2.5e-106 389.8 352 61.4
Dinv24788 Davidia involucrata HOM05D006540 ORTHO05D008202 2.7e-105 386.3 351 70.1
Gorai.002G186600 Gossypium raimondii HOM05D006540 ORTHO05D008202 2.7e-105 386.3 359 73.0
Cfa009208 Carpinus fangiana HOM05D006540 ORTHO05D008202 6.1e-105 385.2 352 65.6
MD16G1102400 Malus domestica HOM05D006540 ORTHO05D008202 1.4e-104 384.0 356 64.6
Gohir.D01G150500 Gossypium hirsutum HOM05D006540 ORTHO05D008202 3.0e-104 382.9 359 72.7
MD13G1101900 Malus domestica HOM05D006540 ORTHO05D008202 3.9e-104 382.5 356 64.0
Eucgr.B03288 Eucalyptus grandis HOM05D006540 ORTHO05D008202 1.5e-103 380.6 356 69.1
Prupe.1G243900 Prunus persica HOM05D006540 ORTHO05D008202 3.3e-103 379.4 356 68.8
PGR102G2745 Punica granatum HOM05D006540 ORTHO05D008202 5.7e-103 378.6 354 70.3
RcHm_v2.0_Chr4g0432921 Rosa chinensis HOM05D006540 ORTHO05D008202 7.4e-103 378.3 356 66.3
TAR622G1382 Trochodendron aralioides HOM05D006540 ORTHO05D008202 2.2e-102 376.7 352 66.5
Cpa.g.sc33.16 Carica papaya HOM05D006540 ORTHO05D008202 2.8e-102 376.3 355 62.3
Duzib268G1404 Durio zibethinus HOM05D006540 ORTHO05D008202 3.1e-101 372.9 354 63.8
ClCG05G025710 Citrullus lanatus HOM05D006540 ORTHO05D008202 9.1e-101 371.3 352 59.1
THA.LOC104825662 Tarenaya hassleriana HOM05D006540 ORTHO05D008202 9.1e-101 371.3 353 67.1
TWI18G0987 Tripterygium wilfordii HOM05D006540 ORTHO05D008202 2.0e-100 370.2 355 67.0
Manes.13G024900 Manihot esculenta HOM05D006540 ORTHO05D008202 5.9e-100 368.6 349 65.9
MSTRG.568 Avicennia marina HOM05D006540 ORTHO05D008202 2.9e-99 366.3 354 59.6
FAN22G2305 Fragaria x ananassa HOM05D006540 ORTHO05D008202 5.0e-99 365.5 360 64.7
FvH4_4g25530 Fragaria vesca HOM05D006540 ORTHO05D008202 1.4e-98 364.0 360 64.7
FAN12G0822 Fragaria x ananassa HOM05D006540 ORTHO05D008202 1.4e-98 364.0 360 64.7
BcaC06g33900 Brassica carinata HOM05D006540 ORTHO05D008202 1.9e-98 363.6 353 59.5
C07p35560 Brassica napus HOM05D006540 ORTHO05D008202 2.5e-98 363.2 353 60.3
BolC7t44080H Brassica oleracea HOM05D006540 ORTHO05D008202 2.5e-98 363.2 353 60.3
FAN17G1845 Fragaria x ananassa HOM05D006540 ORTHO05D008202 2.5e-98 363.2 360 64.4
FAN07G1259 Fragaria x ananassa HOM05D006540 ORTHO05D008202 4.2e-98 362.5 360 64.2
Oeu059907.1 Olea europaea HOM05D006540 ORTHO05D008202 5.5e-98 362.1 360 61.1
A06p41910 Brassica napus HOM05D006540 ORTHO05D008202 7.2e-98 361.7 355 61.7
BraA06t27110Z Brassica rapa HOM05D006540 ORTHO05D008202 7.2e-98 361.7 355 61.7
Aa31LG2G5960 Aethionema arabicum HOM05D006540 ORTHO05D008202 1.6e-97 360.5 357 58.5
QL03p058139 Quercus lobata HOM05D006540 ORTHO05D008202 1.6e-97 360.5 407 61.2
Migut.K00595 Erythranthe guttata HOM05D006540 ORTHO05D008202 6.1e-97 358.6 355 56.9
CARHR147570 Cardamine hirsuta HOM05D006540 ORTHO05D008202 7.9e-97 358.2 357 60.8
Haze_12245 Corylus avellana HOM05D006540 ORTHO05D008202 1.8e-96 357.1 371 64.2
Sp2g15690 Schrenkiella parvula HOM05D006540 ORTHO05D008202 3.0e-96 356.3 357 60.2
SalBow2G2200 Salvia bowleyana HOM05D006540 ORTHO05D008202 3.9e-96 355.9 358 56.4
AL5G15370 Arabidopsis lyrata HOM05D006540 ORTHO05D008202 5.7e-95 352.1 354 60.7
Duzib248G0112 Durio zibethinus HOM05D006540 ORTHO05D008202 7.4e-95 351.7 353 68.3
Glyma.17G134500 Glycine max HOM05D006540 ORTHO05D008202 9.7e-95 351.3 349 62.8
Hma1.2p1_0223F.1_g093990 Hydrangea macrophylla HOM05D006540 ORTHO05D008202 9.7e-95 351.3 377 56.0
Gohir.A01G159600 Gossypium hirsutum HOM05D006540 ORTHO05D008202 1.1e-93 347.8 357 68.3
Carub.0005s0457 Capsella rubella HOM05D006540 ORTHO05D008202 1.8e-93 347.1 353 63.2
Thhalv10004491m.g Eutrema salsugineum HOM05D006540 ORTHO05D008202 2.4e-93 346.7 358 55.9
Phvul.003G064400 Phaseolus vulgaris HOM05D006540 ORTHO05D008202 4.1e-93 345.9 350 56.6
Thecc.02G259400 Theobroma cacao HOM05D006540 ORTHO05D008202 4.1e-93 345.9 353 68.8
AT3G26580 Arabidopsis thaliana HOM05D006540 ORTHO05D008202 5.3e-93 345.5 355 59.4
arahy.Tifrunner.gnm1.ann1.LD9JWE Arachis hypogaea HOM05D006540 ORTHO05D008202 2.0e-92 343.6 357 61.6
vmacro16198 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 3.5e-92 342.8 356 58.7
arahy.Tifrunner.gnm1.ann1.NX3C69 Arachis hypogaea HOM05D006540 ORTHO05D008202 4.5e-92 342.4 357 61.3
Lj6A811T79 Lonicera japonica HOM05D006540 ORTHO05D008202 4.5e-92 342.4 358 60.3
COL.COLO4_24263 Corchorus olitorius HOM05D006540 ORTHO05D008202 1.7e-91 340.5 352 56.0
Aqoxy3G01202 Aquilegia oxysepala HOM05D006540 ORTHO05D008202 2.9e-91 339.7 354 61.3
Actinidia37429 Actinidia chinensis HOM05D006540 ORTHO05D008202 1.5e-90 337.4 350 62.6
Cc11_g15700 Coffea canephora HOM05D006540 ORTHO05D008202 4.2e-90 335.9 361 60.1
BcaC06g31063 Brassica carinata HOM05D006540 ORTHO05D008202 7.2e-90 335.1 355 57.7
Lj4g0023216 Lotus japonicus HOM05D006540 ORTHO05D008202 7.2e-90 335.1 386 54.9
EL10Ac6g13801 Beta vulgaris HOM05D006540 ORTHO05D008202 1.2e-89 334.3 361 54.3
Rhsim12G0110600 Rhododendron simsii HOM05D006540 ORTHO05D008202 4.7e-89 332.4 375 60.5
Nitab4.5_0000007g0060 Nicotiana tabacum HOM05D006540 ORTHO05D008202 1.4e-88 330.9 366 57.9
Lalb_Chr05g0228421 Lupinus albus HOM05D006540 ORTHO05D008202 1.8e-88 330.5 348 60.9
PGSC0003DMG400018605 Solanum tuberosum HOM05D006540 ORTHO05D008202 2.3e-88 330.1 363 60.1
Nitab4.5_0003628g0010 Nicotiana tabacum HOM05D006540 ORTHO05D008202 5.2e-88 328.9 359 59.6
Actinidia15092 Actinidia chinensis HOM05D006540 ORTHO05D008202 3.3e-87 326.2 353 64.0
CSS0000303 Camellia sinensis var. sinensis HOM05D006540 ORTHO05D008202 3.3e-87 326.2 363 63.6
Sopen05g008320 Solanum pennellii HOM05D006540 ORTHO05D008202 5.7e-87 325.5 361 60.9
CANSAT35G0572 Cannabis sativa HOM05D006540 ORTHO05D008202 2.8e-86 323.2 356 60.1
DCAR_024432 Daucus carota HOM05D006540 ORTHO05D008202 6.3e-86 322.0 334 59.6
CDE09G1037 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 4.1e-85 319.3 347 55.6
Peaxi162Scf00128g00138 Petunia axillaris HOM05D006540 ORTHO05D008202 5.3e-85 318.9 364 58.5
vmacro01127 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 7.0e-85 318.5 355 58.9
Medtr8g069450 Medicago truncatula HOM05D006540 ORTHO05D008202 9.1e-85 318.2 350 55.1
CAN.G832.5 Capsicum annuum HOM05D006540 ORTHO05D008202 2.7e-84 316.6 378 58.2
Ca_22583_v3 Cicer arietinum L. HOM05D006540 ORTHO05D008202 6.5e-83 312.0 347 57.9
Potri.013G090000 Populus trichocarpa HOM05D006540 ORTHO05D008202 1.1e-82 311.2 334 58.1
Nn4g22628 Nelumbo nucifera HOM05D006540 ORTHO05D008202 1.9e-82 310.5 182 81.9
AUR62024282 Chenopodium quinoa HOM05D006540 ORTHO05D008202 2.5e-82 310.1 354 55.1
CDE02G2769 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 3.2e-82 309.7 347 54.8
Sabra13G0070200 Salix brachista HOM05D006540 ORTHO05D008202 3.2e-82 309.7 244 68.9
HanXRQChr08g0208131 Helianthus annuus HOM05D006540 ORTHO05D008202 4.2e-82 309.3 367 61.0
Ah.03g133040 Amaranthus hybridus HOM05D006540 ORTHO05D008202 5.5e-82 308.9 361 56.0
Psat4g116680 Pisum sativum HOM05D006540 ORTHO05D008202 2.1e-81 307.0 359 51.3
Lsat_1_v5_gn_8_152220 Lactuca sativa HOM05D006540 ORTHO05D008202 4.7e-81 305.8 363 56.7
GSVIVG01004073001 Vitis vinifera HOM05D006540 ORTHO05D008202 4.0e-80 302.8 180 79.4
AUR62005459 Chenopodium quinoa HOM05D006540 ORTHO05D008202 5.2e-80 302.4 351 56.7
PSO017G4849 Papaver somniferum HOM05D006540 ORTHO05D008202 8.3e-78 295.0 358 49.7
MBI10_g13027_MAGBIO Magnolia biondii HOM05D006540 ORTHO05D008202 1.0e-75 288.1 391 57.8
ECA233G5619 Erigeron canadensis HOM05D006540 ORTHO05D008202 1.3e-75 287.7 250 67.6
ATR0686G190 Amborella trichopoda HOM05D006540 ORTHO05D008202 1.1e-74 284.6 277 55.2
unitig_21.g20872 Utricularia gibba HOM05D006540 ORTHO05D008202 1.8e-72 277.3 355 47.9
PSO478G4529 Papaver somniferum HOM05D006540 ORTHO05D008202 4.0e-72 276.2 336 54.5
Rhsim12G0041000 Rhododendron simsii HOM05D006540 ORTHO05D008202 3.4e-71 273.1 434 46.5
TPR.G17765 Trifolium pratense HOM05D006540 ORTHO05D008202 1.2e-68 264.6 351 49.0
HPP92_002022 Vanilla planifolia HOM05D006540 ORTHO05D008202 4.3e-66 256.1 183 67.8
VMungo0251G1250 Vigna mungo HOM05D006540 ORTHO05D008202 1.0e-64 251.5 284 55.6
MELO3C011955.2 Cucumis melo HOM05D006540 ORTHO05D008202 6.4e-62 242.3 288 54.2
CsaV3_5G031170 Cucumis sativus L. HOM05D006540 ORTHO05D008202 8.3e-62 241.9 281 55.2
Sed0005489 Sechium edule HOM05D006540 ORTHO05D008202 1.8e-61 240.7 286 55.6
TAR374G0845 Trochodendron aralioides HOM05D006540 ORTHO05D008202 2.7e-60 236.9 281 65.8
Zm00001eb096140 Zea mays HOM05D006540 ORTHO05D008202 6.2e-57 225.7 241 63.1
Os03g0428800 Oryza sativa ssp. japonica HOM05D006540 ORTHO05D008202 7.5e-55 218.8 184 59.8
BcaB01g00564 Brassica carinata HOM05D006540 ORTHO05D008202 2.2e-54 217.2 277 46.2
AagrBONN_evm.TU.Sc2ySwM_340.367 Anthoceros agrestis HOM05D006540 ORTHO05D008202 1.2e-47 194.9 182 52.7
Mapoly0037s0067 Marchantia polymorpha HOM05D006540 ORTHO05D008202 4.4e-47 193.0 180 52.8
SEGI_37038 Sequoiadendron giganteum HOM05D006540 ORTHO05D008202 4.4e-47 193.0 173 52.6
SMO347G0417 Selaginella moellendorffii HOM05D006540 ORTHO05D008202 3.2e-45 186.8 180 50.6
Pp3c27_6670 Physcomitrium patens HOM05D006540 ORTHO05D008202 8.1e-41 172.2 175 47.4
BcaC06g33898 Brassica carinata HOM05D006540 ORTHO05D008202 1.7e-22 111.3 82 61.0
Cre12.g528050 Chlamydomonas reinhardtii HOM05D006540 ORTHO05D008202 1.6e-20 104.8 174 38.5
CBR_g8379 Chara braunii HOM05D006540 ORTHO05D008202 5.1e-19 99.8 133 39.1
Oeu029879.1 Olea europaea HOM05D006540 ORTHO05D008202 3.1e-16 90.5 72 58.3
MCO07G599 Micromonas commoda HOM05D006540 ORTHO05D008202 9.0e-16 89.0 117 38.5
PRCOL_00004949 Prasinoderma coloniale HOM05D006540 ORTHO05D008202 3.4e-15 87.0 174 31.6
RcHm_v2.0_Chr5g0067811 Rosa chinensis HOM05D006540 ORTHO05D008202 5.8e-15 86.3 45 88.9
unitig_744.g24293 Utricularia gibba HOM05D006540 ORTHO05D008202 5.6e-10 69.7 44 65.9
QL04p066147 Quercus lobata HOM05D006540 ORTHO05D008202 6.2e-09 66.2 35 88.6
TAR625G0150 Trochodendron aralioides HOM05D006540 ORTHO05D008202 4.5e-07 60.1 76 44.7


User provided reference genes

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