Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0009420 Simmondsia chinensis HOM05D006585 ORTHO05D007798 1.2e-166 589.7 301 100.0
EL10Ac6g13783 Beta vulgaris HOM05D006585 ORTHO05D007798 1.0e-67 261.2 309 48.5
AUR62024297 Chenopodium quinoa HOM05D006585 ORTHO05D007798 2.9e-62 243.0 282 51.4
Ah.03g133160 Amaranthus hybridus HOM05D006585 ORTHO05D007798 1.8e-56 223.8 284 46.8
Potri.010G044800 Populus trichocarpa HOM05D006585 ORTHO05D007798 2.1e-44 183.7 288 41.7
TWI36G0027 Tripterygium wilfordii HOM05D006585 ORTHO05D007798 2.8e-41 173.3 288 43.8
QL03p058556 Quercus lobata HOM05D006585 ORTHO05D007798 6.2e-41 172.2 295 39.3
Dinv24805 Davidia involucrata HOM05D006585 ORTHO05D007798 1.1e-40 171.4 314 40.8
Actinidia27800 Actinidia chinensis HOM05D006585 ORTHO05D007798 1.2e-39 167.9 325 39.7
arahy.Tifrunner.gnm1.ann1.QD46ZG Arachis hypogaea HOM05D006585 ORTHO05D007798 2.0e-39 167.2 307 39.4
Sed0016045 Sechium edule HOM05D006585 ORTHO05D007798 2.6e-39 166.8 291 38.1
arahy.Tifrunner.gnm1.ann1.I6QGYY Arachis hypogaea HOM05D006585 ORTHO05D007798 3.4e-39 166.4 312 39.1
Cfa009198 Carpinus fangiana HOM05D006585 ORTHO05D007798 5.8e-39 165.6 315 37.8
Phvul.003G063800 Phaseolus vulgaris HOM05D006585 ORTHO05D007798 7.6e-39 165.2 292 39.4
Sabra10G0023300 Salix brachista HOM05D000740 ORTHO05D003236 1.7e-38 164.1 327 37.3
Lj4g0008721 Lotus japonicus HOM05D006585 ORTHO05D007798 4.9e-38 162.5 290 39.0
RcHm_v2.0_Chr4g0433351 Rosa chinensis HOM05D006585 ORTHO05D007798 6.4e-38 162.2 313 36.4
THA.LOC104823651 Tarenaya hassleriana HOM05D006585 ORTHO05D007798 8.4e-38 161.8 290 38.6
FvH4_4g25900 Fragaria vesca HOM05D006585 ORTHO05D007798 1.1e-37 161.4 332 36.1
Psat1g023160 Pisum sativum HOM05D006585 ORTHO05D007798 1.2e-36 157.9 286 39.5
Glyma.18G143200 Glycine max HOM05D006585 ORTHO05D007798 1.6e-36 157.5 291 38.1
Medtr2g079800 Medicago truncatula HOM05D006585 ORTHO05D007798 2.7e-36 156.8 292 39.4
DCAR_031138 Daucus carota HOM05D006585 ORTHO05D007798 7.8e-36 155.2 277 39.0
Duzib248G0505 Durio zibethinus HOM05D006585 ORTHO05D007798 3.0e-35 153.3 315 36.2
ClCG08G017740 Citrullus lanatus HOM05D006585 ORTHO05D007798 3.9e-35 152.9 303 37.0
Sopen05g008150 Solanum pennellii HOM05D006585 ORTHO05D007798 1.1e-34 151.4 316 36.4
Oeu049180.1 Olea europaea HOM05D006585 ORTHO05D007798 1.5e-34 151.0 284 39.1
CANSAT01G1755 Cannabis sativa HOM05D006585 ORTHO05D007798 2.5e-34 150.2 322 34.8
Peaxi162Scf00128g00033 Petunia axillaris HOM05D006585 ORTHO05D007798 2.5e-34 150.2 316 35.8
Prupe.1G247500 Prunus persica HOM05D006585 ORTHO05D007798 1.2e-33 147.9 325 34.5
Manes.13G025900 Manihot esculenta HOM05D006585 ORTHO05D007798 2.1e-33 147.1 290 37.6
Thecc.02G257200 Theobroma cacao HOM05D006585 ORTHO05D007798 2.8e-33 146.7 319 34.8
TAR371G0523 Trochodendron aralioides HOM05D006585 ORTHO05D007798 2.8e-33 146.7 295 37.3
FAN17G2552 Fragaria x ananassa HOM05D006585 ORTHO05D007798 4.7e-33 146.0 344 34.3
Gohir.A03G136500 Gossypium hirsutum HOM05D006585 ORTHO05D007798 4.7e-33 146.0 310 34.5
Lj6C811T17 Lonicera japonica HOM05D006585 ORTHO05D007798 4.7e-33 146.0 309 37.2
GSVIVG01004087001 Vitis vinifera HOM05D006585 ORTHO05D007798 6.2e-33 145.6 314 38.9
HanXRQChr17g0539731 Helianthus annuus HOM05D006585 ORTHO05D007798 1.1e-32 144.8 298 35.9
Cpa.g.sc33.3 Carica papaya HOM05D006585 ORTHO05D007798 1.8e-32 144.1 289 34.6
COL.COLO4_24245 Corchorus olitorius HOM05D006585 ORTHO05D002520 2.4e-32 143.7 291 36.1
MD13G1097800 Malus domestica HOM05D006585 ORTHO05D007798 2.4e-32 143.7 343 35.3
TWI75G0333 Tripterygium wilfordii HOM05D006585 ORTHO05D007798 4.0e-32 142.9 296 35.1
Aqoxy5G03808 Aquilegia oxysepala HOM05D006585 ORTHO05D007798 6.9e-32 142.1 311 36.3
Gorai.005G179800 Gossypium raimondii HOM05D006585 ORTHO05D007798 9.0e-32 141.7 286 35.7
Lsat_1_v5_gn_3_28841 Lactuca sativa HOM05D006585 ORTHO05D007798 1.2e-31 141.4 344 34.0
Medtr8g069560 Medicago truncatula HOM05D006585 ORTHO05D007798 1.5e-31 141.0 313 34.2
Dinv20613 Davidia involucrata HOM05D006585 ORTHO05D007798 2.0e-31 140.6 318 32.7
FAN12G1097 Fragaria x ananassa HOM05D006585 ORTHO05D007798 2.0e-31 140.6 323 35.0
FAN12G1379 Fragaria x ananassa HOM05D006585 ORTHO05D007798 2.0e-31 140.6 323 35.0
Prupe.1G247600 Prunus persica HOM05D006585 ORTHO05D007798 3.4e-31 139.8 277 34.7
CiPaw.05G183700 Carya illinoinensis HOM05D006585 ORTHO05D007798 5.8e-31 139.0 287 36.2
Solyc05g013360.3 Solanum lycopersicum HOM05D006585 ORTHO05D007798 5.8e-31 139.0 298 35.9
Sp1g09410 Schrenkiella parvula HOM05D006585 ORTHO05D007798 9.9e-31 138.3 331 34.4
GSVIVG01007676001 Vitis vinifera HOM05D006585 ORTHO05D007798 3.8e-30 136.3 282 36.9
AT1G10710 Arabidopsis thaliana HOM05D006585 ORTHO05D007798 4.9e-30 136.0 342 32.5
MD13G1097900 Malus domestica HOM05D006585 ORTHO05D007798 1.4e-29 134.4 327 32.7
Nitab4.5_0002255g0100 Nicotiana tabacum HOM05D006585 ORTHO05D007798 5.4e-29 132.5 304 33.2
Migut.E00193 Erythranthe guttata HOM05D006585 ORTHO05D007798 1.2e-28 131.3 240 36.7
Nn3g16750 Nelumbo nucifera HOM05D006585 ORTHO05D007798 3.5e-28 129.8 286 37.4
MBI10_g00733_MAGBIO Magnolia biondii HOM05D006585 ORTHO05D007798 4.6e-28 129.4 322 30.4
VMungo0251G2192 Vigna mungo HOM05D006585 ORTHO05D007798 1.0e-27 128.3 270 35.9
AL1G21590 Arabidopsis lyrata HOM05D006585 ORTHO05D007798 3.9e-27 126.3 334 30.5
Ciclev10033875m.g Citrus clementina HOM05D006585 ORTHO05D007798 3.9e-27 126.3 298 35.6
Ca_22577_v3 Cicer arietinum L. HOM05D006585 ORTHO05D007798 6.6e-27 125.6 279 35.5
Carub.0001s1022 Capsella rubella HOM05D006585 ORTHO05D007798 1.5e-26 124.4 326 31.3
SGA_v2.0_scaffold63G21726 Striga asiatica HOM05D006585 ORTHO05D007798 4.3e-26 122.9 301 30.9
SGA_v2.0_scaffold87G27084 Striga asiatica HOM05D006585 ORTHO05D007798 1.3e-25 121.3 336 31.8
Cc11_g15560 Coffea canephora HOM05D006585 ORTHO05D007798 6.2e-25 119.0 322 33.5
MBI16_g23844_MAGBIO Magnolia biondii HOM05D006585 ORTHO05D007798 8.1e-25 118.6 307 33.2
Thhalv10007956m.g Eutrema salsugineum HOM05D006585 ORTHO05D007798 1.8e-24 117.5 361 30.2
Nitab4.5_0002552g0050 Nicotiana tabacum HOM05D006585 ORTHO05D007798 1.8e-24 117.5 292 32.5
BcaC07g41800 Brassica carinata HOM05D006585 ORTHO05D007798 6.9e-24 115.5 344 29.4
ECA246G2324 Erigeron canadensis HOM05D000225 ORTHO05D002520 1.5e-23 114.4 269 36.4
Aa31LG1G4120 Aethionema arabicum HOM05D006585 ORTHO05D007798 2.0e-23 114.0 266 33.5
BcaB08g37368 Brassica carinata HOM05D006585 ORTHO05D007798 4.5e-23 112.8 191 39.3
FAN07G1571 Fragaria x ananassa HOM05D006585 ORTHO05D007798 5.8e-23 112.5 158 42.4
Gohir.D02G159700 Gossypium hirsutum HOM05D006585 ORTHO05D007798 5.8e-23 112.5 240 33.3
CARHR010890 Cardamine hirsuta HOM05D006585 ORTHO05D007798 9.9e-23 111.7 289 32.9
C08p48610 Brassica napus HOM05D006585 ORTHO05D007798 5.4e-21 105.9 364 28.3
ATR1154G038 Amborella trichopoda HOM05D006585 ORTHO05D007798 2.7e-20 103.6 242 31.0
AUR62005444 Chenopodium quinoa HOM05D006585 ORTHO05D007798 1.0e-19 101.7 135 45.9
FAN22G0568 Fragaria x ananassa HOM05D006585 ORTHO05D007798 1.1e-18 98.2 151 40.4
BraA09t41832Z Brassica rapa HOM05D006585 ORTHO05D007798 1.9e-18 97.4 380 26.6
Zm00001eb382430 Zea mays HOM05D006585 ORTHO05D007798 3.3e-18 96.7 322 29.5
Glyma.08G283200 Glycine max HOM05D006585 ORTHO05D007798 9.6e-18 95.1 87 52.9
TAR629G0056 Trochodendron aralioides HOM05D006585 ORTHO05D007798 1.3e-17 94.7 261 33.7
Lalb_Chr16g0392221 Lupinus albus HOM05D006585 ORTHO05D007798 2.1e-17 94.0 212 36.3
CSS0026295 Camellia sinensis var. sinensis HOM05D006585 ORTHO05D007798 3.7e-17 93.2 130 49.2
SalBow8G1297 Salvia bowleyana HOM05D006585 ORTHO05D007798 4.8e-17 92.8 130 40.0
COL.COLO4_30156 Corchorus olitorius HOM05D006585 ORTHO05D007798 1.1e-16 91.7 282 29.4
Haze_12236 Corylus avellana HOM05D006585 ORTHO05D007798 1.1e-16 91.7 213 32.9
ATR1154G026 Amborella trichopoda HOM05D006585 ORTHO05D007798 1.2e-15 88.2 103 41.7
BolC8t52400H Brassica oleracea HOM05D006585 ORTHO05D007798 2.0e-15 87.4 408 25.7
HPP92_008331 Vanilla planifolia HOM05D006585 ORTHO05D007798 6.4e-14 82.4 132 36.4
A09p64570 Brassica napus HOM05D006585 ORTHO05D007798 1.2e-12 78.2 387 24.3
PSO832G2940 Papaver somniferum HOM05D006585 ORTHO05D007798 7.9e-12 75.5 153 34.0
Thecc.03G022200 Theobroma cacao HOM05D006585 ORTHO05D007798 1.8e-11 74.3 237 30.4
TPR.G34666 Trifolium pratense HOM05D006585 ORTHO05D007798 2.3e-11 73.9 171 33.9
PSO063G7660 Papaver somniferum HOM05D000629 ORTHO05D007798 3.3e-10 70.1 182 32.4
PGR119G1584 Punica granatum HOM05D006585 ORTHO05D007798 3.3e-10 70.1 289 29.1
Cc04_g11830 Coffea canephora HOM05D006585 ORTHO05D007798 5.6e-10 69.3 102 41.2
Actinidia08143 Actinidia chinensis HOM05D006585 ORTHO05D007798 1.6e-09 67.8 329 29.2
PSO832G3049 Papaver somniferum HOM05D000629 ORTHO05D007798 2.8e-09 67.0 181 28.7
EL10Ac5g10683 Beta vulgaris HOM05D006585 ORTHO05D007798 4.8e-09 66.2 109 41.3
SEGI_25539 Sequoiadendron giganteum HOM05D006585 ORTHO05D007798 1.8e-08 64.3 202 30.2
PSO063G0496 Papaver somniferum HOM05D006585 ORTHO05D007798 4.0e-08 63.2 314 26.8
SHI17754 Sapria himalayana HOM05D006585 ORTHO05D007798 1.2e-07 61.6 42 57.1
Oeu056719.1 Olea europaea HOM05D006585 ORTHO05D007798 3.4e-07 60.1 168 31.5
Rhsim12G0041300 Rhododendron simsii HOM05D006585 ORTHO05D007798 7.6e-07 58.9 132 37.9
SGA_v2.0_scaffold779G53588 Striga asiatica HOM05D006585 ORTHO05D007798 2.9e-06 57.0 93 32.3
SGA_v2.0_scaffold34G13586 Striga asiatica HOM05D006585 ORTHO05D007798 4.9e-06 56.2 93 32.3


User provided reference genes

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