Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 4.2e-93 344.7 180 100.0
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 3.6e-68 261.9 173 78.0
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 1.1e-66 256.9 175 75.4
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 1.5e-66 256.5 177 75.1
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 1.9e-66 256.1 175 75.4
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 3.3e-66 255.4 173 75.1
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 4.3e-66 255.0 175 75.4
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 5.7e-66 254.6 175 74.3
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 9.7e-66 253.8 173 75.1
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 1.6e-65 253.1 173 75.1
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 3.7e-65 251.9 182 74.2
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.1e-64 250.4 175 73.1
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 4.1e-64 248.4 184 73.4
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 4.1e-64 248.4 178 72.5
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 4.1e-64 248.4 175 73.1
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 5.3e-64 248.1 183 73.8
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 5.3e-64 248.1 175 73.1
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 1.2e-63 246.9 180 70.6
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 1.5e-63 246.5 175 72.0
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 2.0e-63 246.1 174 71.3
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 2.0e-63 246.1 174 73.6
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 5.9e-63 244.6 174 71.3
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 7.7e-63 244.2 178 71.3
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 1.0e-62 243.8 168 72.6
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 1.0e-62 243.8 175 73.1
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 1.3e-62 243.4 173 72.8
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 1.3e-62 243.4 171 73.7
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 2.2e-62 242.7 184 70.1
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 5.0e-62 241.5 174 71.8
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 8.5e-62 240.7 174 73.0
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 1.1e-61 240.4 171 73.7
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 1.4e-61 240.0 171 73.7
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.4e-61 240.0 175 70.3
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 1.9e-61 239.6 161 76.4
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 4.2e-61 238.4 175 70.9
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.5e-61 238.0 180 70.6
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 5.5e-61 238.0 170 74.1
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 7.2e-61 237.7 208 62.5
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 7.2e-61 237.7 179 69.8
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 7.2e-61 237.7 168 72.0
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 1.6e-60 236.5 171 71.9
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 1.6e-60 236.5 191 68.1
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 7.9e-60 234.2 168 72.0
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 7.9e-60 234.2 169 72.2
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 3.0e-59 232.3 178 70.2
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 3.0e-59 232.3 163 71.2
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 8.8e-59 230.7 170 71.2
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 2.0e-58 229.6 170 70.6
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 7.4e-58 227.6 173 65.3
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 9.7e-58 227.3 181 66.9
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 9.7e-58 227.3 170 69.4
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.3e-57 226.9 175 69.7
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.3e-57 226.9 179 68.2
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 1.3e-57 226.9 169 67.5
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 4.1e-56 221.9 179 63.7
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 6.9e-56 221.1 191 61.8
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 1.2e-55 220.3 194 62.4
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.5e-55 219.9 165 69.1
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 2.6e-55 219.2 175 67.4
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 3.4e-55 218.8 159 71.7
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 3.4e-55 218.8 175 64.0
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 1.0e-54 217.2 140 80.0
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.7e-54 216.5 174 65.5
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.2e-54 216.1 175 66.9
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 2.2e-54 216.1 171 67.3
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 2.9e-54 215.7 171 63.7
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 8.5e-54 214.2 174 65.5
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 8.5e-54 214.2 174 65.5
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 3.2e-53 212.2 174 64.4
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 4.2e-53 211.8 161 68.3
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 7.2e-53 211.1 138 79.0
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 7.9e-52 207.6 237 53.2
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 3.9e-51 205.3 166 68.1
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 2.0e-50 203.0 128 81.2
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 2.6e-50 202.6 187 60.4
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 3.3e-50 202.2 175 64.6
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 1.7e-49 199.9 141 75.9
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 2.8e-49 199.1 188 61.7
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 3.1e-48 195.7 134 74.6
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 9.1e-48 194.1 123 81.3
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.2e-47 193.7 172 57.0
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 2.0e-47 193.0 169 62.1
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.0e-46 190.7 171 55.6
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 2.2e-46 189.5 163 60.1
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 2.2e-46 189.5 168 58.3
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 3.8e-46 188.7 163 60.1
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 3.2e-45 185.7 170 57.1
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 6.1e-44 181.4 173 57.8
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 1.4e-43 180.3 171 52.6
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 3.0e-43 179.1 160 55.0
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 6.7e-43 177.9 199 54.8
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 8.8e-43 177.6 171 52.0
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 2.0e-42 176.4 168 51.8
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 2.6e-42 176.0 171 52.6
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 4.4e-42 175.3 141 63.1
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 1.3e-41 173.7 111 79.3
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.7e-41 173.3 176 50.6
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 3.7e-41 172.2 174 52.3
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 9.1e-40 167.5 175 52.0
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.6e-39 166.8 173 51.4
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 2.2e-38 162.9 169 50.9
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 2.9e-38 162.5 138 61.6
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 5.0e-38 161.8 175 50.3
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 2.5e-37 159.5 169 47.9
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 5.5e-37 158.3 140 58.6
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 4.7e-36 155.2 164 51.2
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 1.0e-35 154.1 169 46.7
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 1.0e-35 154.1 169 46.7
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 4.0e-35 152.1 164 50.0
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 8.8e-35 151.0 118 64.4
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 2.6e-34 149.4 134 61.9
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 1.3e-33 147.1 159 56.0
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 2.8e-33 146.0 118 66.9
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 4.8e-33 145.2 121 64.5
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 3.8e-30 135.6 172 44.2
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 8.6e-30 134.4 168 44.6
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 8.6e-30 134.4 180 42.2
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 1.5e-29 133.7 121 57.9
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.2e-28 130.6 116 62.1
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 3.6e-28 129.0 136 48.5
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 3.6e-28 129.0 118 61.9
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 2.3e-27 126.3 124 58.1
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 4.0e-27 125.6 168 42.3
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 1.7e-25 120.2 188 39.4
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 2.8e-25 119.4 170 41.8
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 3.7e-25 119.0 170 41.8
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 6.3e-25 118.2 170 41.8
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 6.3e-25 118.2 170 41.2
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 5.4e-24 115.2 168 39.9
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 7.0e-24 114.8 169 40.2
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 1.0e-22 110.9 179 37.4
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 1.3e-22 110.5 83 71.1
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 3.8e-22 109.0 171 39.8
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 1.0e-19 100.9 57 87.7
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 8.9e-19 97.8 63 76.2
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 3.4e-18 95.9 57 84.2
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.3e-17 94.0 57 84.2
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.7e-17 93.6 57 82.5
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 1.7e-17 93.6 57 80.7
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 8.3e-17 91.3 128 42.2
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 8.3e-17 91.3 126 48.4
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 1.8e-16 90.1 158 32.9
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 1.8e-16 90.1 168 34.5
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 7.8e-15 84.7 97 50.5
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 3.6e-12 75.9 130 38.5
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 2.3e-11 73.2 41 85.4
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 2.4e-08 63.2 80 48.8
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 9.2e-08 61.2 67 52.2
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 3.5e-07 59.3 66 47.0


User provided reference genes

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