Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0008660 Simmondsia chinensis HOM05D007593 ORTHO05D009686 6.5e-121 437.6 248 100.0
Prupe.1G263900 Prunus persica HOM05D007593 ORTHO05D009686 6.2e-71 271.6 237 63.7
AUR62026494 Chenopodium quinoa HOM05D007593 ORTHO05D009686 8.1e-71 271.2 229 67.7
Thecc.02G236500 Theobroma cacao HOM05D007593 ORTHO05D009686 8.9e-70 267.7 234 63.2
AUR62026300 Chenopodium quinoa HOM05D007593 ORTHO05D009686 1.5e-69 266.9 229 66.8
Atru.chr11.1889 Acer truncatum HOM05D007593 ORTHO05D009686 3.4e-69 265.8 233 63.5
PGR102G2137 Punica granatum HOM05D007593 ORTHO05D009686 4.9e-68 261.9 237 59.9
FAN12G3835 Fragaria x ananassa HOM05D007593 ORTHO05D009686 6.4e-68 261.5 232 62.9
Duzib268G1169 Durio zibethinus HOM05D007593 ORTHO05D009686 8.3e-68 261.2 234 62.4
QL03p066681 Quercus lobata HOM05D007593 ORTHO05D009686 5.4e-67 258.5 278 56.5
EL10Ac6g13115 Beta vulgaris HOM05D007593 ORTHO05D009686 4.6e-66 255.4 276 58.0
MD13G1083000 Malus domestica HOM05D007593 ORTHO05D009686 7.8e-66 254.6 238 62.6
Cpa.g.sc5.302 Carica papaya HOM05D007593 ORTHO05D009686 3.0e-65 252.7 237 57.4
Aqoxy3G00839 Aquilegia oxysepala HOM05D007593 ORTHO05D009686 8.6e-65 251.1 237 61.2
Manes.01G193300 Manihot esculenta HOM05D007593 ORTHO05D009686 8.6e-65 251.1 233 60.1
TWI75G0370 Tripterygium wilfordii HOM05D007593 ORTHO05D009686 2.5e-64 249.6 237 55.7
Glyma.02G025300 Glycine max HOM05D007593 ORTHO05D009686 3.3e-64 249.2 237 60.3
Potri.008G190600 Populus trichocarpa HOM05D007593 ORTHO05D009686 3.6e-63 245.7 237 59.5
VMungo1215G1938 Vigna mungo HOM05D007593 ORTHO05D009686 6.2e-63 245.0 235 58.7
Nn3g17072 Nelumbo nucifera HOM05D007593 ORTHO05D009686 1.4e-62 243.8 237 59.5
Phvul.002G079500 Phaseolus vulgaris HOM05D007593 ORTHO05D009686 2.9e-60 236.1 237 56.5
CiPaw.06G078500 Carya illinoinensis HOM05D007593 ORTHO05D009686 8.4e-60 234.6 237 58.6
FAN17G2874 Fragaria x ananassa HOM05D007593 ORTHO05D009686 1.1e-59 234.2 234 56.8
FvH4_4g35470 Fragaria vesca HOM05D007593 ORTHO05D009686 4.2e-59 232.3 239 57.7
RcHm_v2.0_Chr4g0445111 Rosa chinensis HOM05D007593 ORTHO05D009686 9.2e-59 231.1 238 55.5
Sabra08G0144600 Salix brachista HOM05D007593 ORTHO05D009686 2.7e-58 229.6 237 57.0
PSO161G0019 Papaver somniferum HOM05D007593 ORTHO05D009686 5.1e-57 225.3 237 52.7
Sabra11G0071900 Salix brachista HOM05D007593 ORTHO05D009686 8.7e-57 224.6 237 56.1
Sabra11G0071700 Salix brachista HOM05D007593 ORTHO05D009686 1.1e-56 224.2 237 56.1
Glyma.01G039400 Glycine max HOM05D007593 ORTHO05D009686 2.1e-55 219.9 237 55.3
FAN07G2090 Fragaria x ananassa HOM05D007593 ORTHO05D009686 1.8e-54 216.9 242 55.0
AL1G21190 Arabidopsis lyrata HOM05D007593 ORTHO05D009686 3.1e-54 216.1 238 52.5
Carub.0001s0986 Capsella rubella HOM05D007593 ORTHO05D009686 2.4e-51 206.5 238 51.7
BolC5t29606H Brassica oleracea HOM05D007593 ORTHO05D009686 5.4e-51 205.3 248 51.6
Psat2g115200 Pisum sativum HOM05D007593 ORTHO05D009686 5.4e-51 205.3 237 52.7
A06p07060 Brassica napus HOM05D007593 ORTHO05D009686 1.6e-50 203.8 240 52.1
FAN12G2740 Fragaria x ananassa HOM05D007593 ORTHO05D009686 2.7e-50 203.0 247 53.4
FAN22G1720 Fragaria x ananassa HOM05D007593 ORTHO05D009686 6.0e-50 201.8 247 52.2
Gohir.D05G322700 Gossypium hirsutum HOM05D007593 ORTHO05D009686 7.8e-50 201.4 235 51.9
Gorai.009G346400 Gossypium raimondii HOM05D007593 ORTHO05D009686 7.8e-50 201.4 235 51.9
BcaC05g24886 Brassica carinata HOM05D007593 ORTHO05D009686 2.3e-49 199.9 248 50.8
Lsat_1_v5_gn_8_160680 Lactuca sativa HOM05D007593 ORTHO05D009686 2.3e-49 199.9 238 49.6
GSVIVG01020118001 Vitis vinifera HOM05D007593 ORTHO05D009686 3.3e-48 196.1 167 63.5
AT1G10417 Arabidopsis thaliana HOM05D007593 ORTHO05D009686 9.6e-48 194.5 238 49.6
Actinidia01171 Actinidia chinensis HOM05D007593 ORTHO05D009686 2.1e-47 193.4 167 63.5
Nitab4.5_0002542g0050 Nicotiana tabacum HOM05D007593 ORTHO05D009686 2.1e-47 193.4 219 54.8
Medtr5g037260 Medicago truncatula HOM05D007593 ORTHO05D009686 2.8e-47 193.0 171 63.7
Ciclev10032856m.g Citrus clementina HOM05D007593 ORTHO05D009686 3.6e-47 192.6 167 62.9
COL.COLO4_36239 Corchorus olitorius HOM05D007593 ORTHO05D009686 4.8e-47 192.2 218 54.1
CARHR010560 Cardamine hirsuta HOM05D007593 ORTHO05D009686 6.9e-46 188.3 235 49.8
Hma1.2p1_0289F.1_g114430 Hydrangea macrophylla HOM05D007593 ORTHO05D009686 4.5e-45 185.7 224 53.1
C05p08550 Brassica napus HOM05D007593 ORTHO05D009686 9.9e-45 184.5 279 44.8
TAR629G1096 Trochodendron aralioides HOM05D007593 ORTHO05D009686 9.9e-45 184.5 156 64.7
Gohir.A05G320500 Gossypium hirsutum HOM05D007593 ORTHO05D009686 3.8e-44 182.6 234 47.9
Nitab4.5_0000791g0030 Nicotiana tabacum HOM05D007593 ORTHO05D009686 8.4e-44 181.4 219 52.1
Haze_12082 Corylus avellana HOM05D007593 ORTHO05D009686 4.2e-43 179.1 207 54.1
Thhalv10007877m.g Eutrema salsugineum HOM05D007593 ORTHO05D009686 4.6e-42 175.6 236 45.8
arahy.Tifrunner.gnm1.ann1.M4LE0B Arachis hypogaea HOM05D007593 ORTHO05D009686 6.7e-41 171.8 219 49.8
Ca_04684_v3 Cicer arietinum L. HOM05D007593 ORTHO05D009686 8.7e-41 171.4 167 59.3
BraA06t23921Z Brassica rapa HOM05D007593 ORTHO05D009686 4.3e-40 169.1 214 48.6
Hund25291 Selenicereus undatus HOM05D007593 ORTHO05D009686 1.4e-38 164.1 118 76.3
CANSAT07G0001 Cannabis sativa HOM05D007593 ORTHO05D009686 9.0e-38 161.4 272 40.4
Cc11_g13810 Coffea canephora HOM05D007593 ORTHO05D009686 9.0e-38 161.4 169 55.0
HanXRQChr12g0371131 Helianthus annuus HOM05D007593 ORTHO05D009686 2.6e-37 159.8 186 49.5
Rhsim12G0127800 Rhododendron simsii HOM05D007593 ORTHO05D009686 3.4e-37 159.5 197 49.7
ECA233G4970 Erigeron canadensis HOM05D007593 ORTHO05D009686 1.3e-36 157.5 250 40.4
Eucgr.B03393 Eucalyptus grandis HOM05D007593 ORTHO05D009686 1.1e-35 154.5 130 63.1
CAN.G27.56 Capsicum annuum HOM05D007593 ORTHO05D009686 2.1e-31 140.2 142 54.9
Lj2g0003805 Lotus japonicus HOM05D007593 ORTHO05D009686 2.4e-30 136.7 237 41.4
BcaC05g24925 Brassica carinata HOM05D007593 ORTHO05D009686 4.2e-27 125.9 235 38.3
vmacro16309 Vaccinium macrocarpon HOM05D007593 ORTHO05D009686 3.1e-22 109.8 130 45.4
BcaC05g24887 Brassica carinata HOM05D007593 ORTHO05D009686 5.3e-22 109.0 166 43.4
Lalb_Chr05g0217431 Lupinus albus HOM05D007593 ORTHO05D009686 7.7e-21 105.1 111 59.5
Lalb_Chr05g0217441 Lupinus albus HOM05D007593 ORTHO05D009686 8.8e-17 91.7 127 40.2
Zm00001eb223170 Zea mays HOM05D007593 ORTHO05D009686 3.4e-13 79.7 120 36.7
DCAR_031078 Daucus carota HOM05D007593 ORTHO05D009686 5.0e-12 75.9 105 41.9
Mapoly0067s0009 Marchantia polymorpha HOM05D007593 ORTHO05D009686 1.4e-11 74.3 219 25.6
Sabra15G0067100 Salix brachista HOM05D007593 ORTHO05D009686 3.2e-11 73.2 73 60.3
Peaxi162Scf00209g00948 Petunia axillaris HOM05D007593 ORTHO05D009686 4.7e-10 69.3 91 45.1
TPR.G26746 Trifolium pratense HOM05D007593 ORTHO05D009686 1.4e-09 67.8 68 61.8
arahy.Tifrunner.gnm1.ann1.YHM9KM Arachis hypogaea HOM05D007593 ORTHO05D009686 3.3e-08 63.2 59 62.7
TAR629G0814 Trochodendron aralioides HOM05D007593 ORTHO05D009686 1.3e-07 61.2 63 54.0
CDE07G1947 Ceratophyllum demersum HOM05D007593 ORTHO05D009686 2.8e-07 60.1 93 38.7
SMO174G0259 Selaginella moellendorffii HOM05D003005 ORTHO05D021244 1.4e-06 57.8 221 22.2
CSS0023539 Camellia sinensis var. sinensis HOM05D007593 ORTHO05D009686 3.1e-06 56.6 114 37.7
Sp1g09040 Schrenkiella parvula HOM05D007593 ORTHO05D009686 5.3e-06 55.8 235 28.9
Ciclev10033560m.g Citrus clementina HOM05D007593 ORTHO05D009686 7.0e-06 55.5 47 63.8


User provided reference genes

Program Settings