Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0008340 Simmondsia chinensis HOM05D007070 ORTHO05D008892 1.4e-81 306.2 156 100.0
Sc04g0008310 Simmondsia chinensis HOM05D007070 ORTHO05D008892 6.8e-76 287.3 189 82.0
Manes.05G098800 Manihot esculenta HOM05D007070 ORTHO05D008892 9.6e-46 187.2 179 58.1
CSS0037166 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 1.0e-42 177.2 194 54.6
CSS0050316 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 1.0e-42 177.2 194 54.6
Lj3P1040T26 Lonicera japonica HOM05D007070 ORTHO05D008892 8.4e-42 174.1 201 54.2
Ah.02g131260 Amaranthus hybridus HOM05D007070 ORTHO05D008892 1.9e-41 172.9 165 60.0
Dinv34174 Davidia involucrata HOM05D007070 ORTHO05D008892 4.2e-41 171.8 158 60.1
Gohir.A13G072600 Gossypium hirsutum HOM05D007070 ORTHO05D008892 4.2e-41 171.8 202 52.5
Haze_12036 Corylus avellana HOM05D007070 ORTHO05D008892 7.1e-41 171.0 194 53.6
Cpa.g.sc183.28 Carica papaya HOM05D007070 ORTHO05D008892 9.3e-41 170.6 196 53.6
COL.COLO4_22972 Corchorus olitorius HOM05D007070 ORTHO05D008892 9.3e-41 170.6 206 52.9
Thecc.02G352500 Theobroma cacao HOM05D007070 ORTHO05D008892 1.2e-40 170.2 174 54.6
TWI75G1629 Tripterygium wilfordii HOM05D007070 ORTHO05D008892 1.2e-40 170.2 195 52.8
QL03p064901 Quercus lobata HOM05D007070 ORTHO05D008892 1.6e-40 169.9 174 56.3
AUR62028813 Chenopodium quinoa HOM05D007070 ORTHO05D008892 2.1e-40 169.5 98 84.7
TAR374G1105 Trochodendron aralioides HOM05D007070 ORTHO05D008892 3.5e-40 168.7 172 57.6
Ciclev10032797m.g Citrus clementina HOM05D007070 ORTHO05D008892 4.6e-40 168.3 183 54.1
Hma1.2p1_0598F.1_g186810 Hydrangea macrophylla HOM05D007070 ORTHO05D008892 4.6e-40 168.3 192 54.2
Duzib251G0126 Durio zibethinus HOM05D007070 ORTHO05D008892 6.0e-40 167.9 204 51.5
arahy.Tifrunner.gnm1.ann1.H49BTR Arachis hypogaea HOM05D007070 ORTHO05D008892 1.3e-39 166.8 186 54.3
FAN17G0782 Fragaria x ananassa HOM05D007070 ORTHO05D008892 1.3e-39 166.8 169 54.4
Gorai.013G083500 Gossypium raimondii HOM05D007070 ORTHO05D008892 1.3e-39 166.8 198 51.5
PGR119G1526 Punica granatum HOM05D007070 ORTHO05D008892 1.3e-39 166.8 153 56.9
FAN07G2888 Fragaria x ananassa HOM05D007070 ORTHO05D008892 1.8e-39 166.4 169 55.0
Gohir.D13G072700 Gossypium hirsutum HOM05D007070 ORTHO05D008892 1.8e-39 166.4 198 51.5
Sed0007814 Sechium edule HOM05D007070 ORTHO05D008892 1.8e-39 166.4 192 50.5
MD13G1074900 Malus domestica HOM05D007070 ORTHO05D008892 2.3e-39 166.0 159 59.7
AUR62005745 Chenopodium quinoa HOM05D007070 ORTHO05D008892 3.0e-39 165.6 135 65.2
Atru.chr11.1834 Acer truncatum HOM05D007070 ORTHO05D008892 3.9e-39 165.2 199 51.8
MELO3C012078.2 Cucumis melo HOM05D007070 ORTHO05D008892 5.1e-39 164.9 175 53.1
Duzib268G0688 Durio zibethinus HOM05D007070 ORTHO05D008892 5.1e-39 164.9 162 55.6
Potri.010G093300 Populus trichocarpa HOM05D007070 ORTHO05D008892 5.1e-39 164.9 162 57.4
arahy.Tifrunner.gnm1.ann1.P1GF9J Arachis hypogaea HOM05D007070 ORTHO05D008892 6.7e-39 164.5 186 54.8
SGA_v2.0_scaffold302G47841 Striga asiatica HOM05D007070 ORTHO05D008892 8.7e-39 164.1 173 55.5
CsaV3_5G032500 Cucumis sativus L. HOM05D007070 ORTHO05D008892 1.1e-38 163.7 170 53.5
Migut.L01320 Erythranthe guttata HOM05D007070 ORTHO05D008892 1.5e-38 163.3 153 58.8
Actinidia31196 Actinidia chinensis HOM05D007070 ORTHO05D008892 1.9e-38 162.9 194 51.5
Cc11_g13320 Coffea canephora HOM05D007070 ORTHO05D008892 1.9e-38 162.9 199 52.8
RcHm_v2.0_Chr4g0440151 Rosa chinensis HOM05D007070 ORTHO05D008892 1.9e-38 162.9 171 55.0
TAR622G0001 Trochodendron aralioides HOM05D007070 ORTHO05D008892 2.5e-38 162.5 158 59.5
Thhalv10008846m.g Eutrema salsugineum HOM05D007070 ORTHO05D008892 4.3e-38 161.8 166 55.4
Phvul.002G088700 Phaseolus vulgaris HOM05D007070 ORTHO05D008892 7.4e-38 161.0 196 50.0
VMungo1215G0639 Vigna mungo HOM05D007070 ORTHO05D008892 7.4e-38 161.0 170 55.9
CARHR014780 Cardamine hirsuta HOM05D007070 ORTHO05D008892 1.3e-37 160.2 186 50.5
CiPaw.05G138000 Carya illinoinensis HOM05D007070 ORTHO05D008892 1.3e-37 160.2 200 51.0
FvH4_4g31650 Fragaria vesca HOM05D007070 ORTHO05D008892 1.3e-37 160.2 161 55.3
FAN12G3127 Fragaria x ananassa HOM05D007070 ORTHO05D008892 1.3e-37 160.2 163 55.2
Carub.0001s1403 Capsella rubella HOM05D007070 ORTHO05D008892 1.6e-37 159.8 203 49.3
AT1G14345 Arabidopsis thaliana HOM05D007070 ORTHO05D008892 4.8e-37 158.3 192 49.5
Nitab4.5_0000141g0310 Nicotiana tabacum HOM05D007070 ORTHO05D008892 6.3e-37 157.9 194 52.1
SalBow2G0737 Salvia bowleyana HOM05D007070 ORTHO05D008892 6.3e-37 157.9 156 57.1
SalBow2G1571 Salvia bowleyana HOM05D007070 ORTHO05D008892 6.3e-37 157.9 156 57.1
FAN22G1781 Fragaria x ananassa HOM05D007070 ORTHO05D008892 8.2e-37 157.5 153 58.8
Nitab4.5_0012600g0010 Nicotiana tabacum HOM05D007070 ORTHO05D008892 8.2e-37 157.5 194 52.6
Lalb_Chr10g0098121 Lupinus albus HOM05D007070 ORTHO05D008892 1.1e-36 157.1 197 50.8
AL1G26230 Arabidopsis lyrata HOM05D007070 ORTHO05D008892 1.4e-36 156.8 192 50.0
Glyma.02G019200 Glycine max HOM05D007070 ORTHO05D008892 1.4e-36 156.8 153 58.2
Rhsim12G0131600 Rhododendron simsii HOM05D007070 ORTHO05D008892 1.4e-36 156.8 166 53.0
Prupe.1G271300 Prunus persica HOM05D007070 ORTHO05D008892 1.8e-36 156.4 164 54.9
RhsimUnG0241900 Rhododendron simsii HOM05D007070 ORTHO05D008892 2.4e-36 156.0 157 56.7
Sabra10G0065800 Salix brachista HOM05D007070 ORTHO05D008892 2.4e-36 156.0 198 50.5
Sp1g12710 Schrenkiella parvula HOM05D007070 ORTHO05D008892 4.1e-36 155.2 185 50.3
MSTRG.13406 Avicennia marina HOM05D007070 ORTHO05D008892 6.9e-36 154.5 155 54.8
Peaxi162Scf00026g00288 Petunia axillaris HOM05D007070 ORTHO05D008892 6.9e-36 154.5 157 58.0
Glyma.01G044500 Glycine max HOM05D007070 ORTHO05D008892 9.0e-36 154.1 172 52.9
C05p12140 Brassica napus HOM05D007070 ORTHO05D008892 1.2e-35 153.7 140 58.6
BcaB02g06484 Brassica carinata HOM05D007070 ORTHO05D008892 1.5e-35 153.3 171 51.5
DCAR_007140 Daucus carota HOM05D007070 ORTHO05D008892 1.5e-35 153.3 196 50.5
BolC5t29966H Brassica oleracea HOM05D007070 ORTHO05D008892 2.0e-35 152.9 138 58.7
A06p10330 Brassica napus HOM05D007070 ORTHO05D008892 4.5e-35 151.8 138 58.0
BraA06t24215Z Brassica rapa HOM05D007070 ORTHO05D008892 4.5e-35 151.8 138 58.0
Lj2g0006172 Lotus japonicus HOM05D007070 ORTHO05D008892 4.5e-35 151.8 128 62.5
CANSAT56G2723 Cannabis sativa HOM05D007070 ORTHO05D008892 1.0e-34 150.6 167 53.9
ClCG05G024460 Citrullus lanatus HOM05D007070 ORTHO05D008892 1.0e-34 150.6 171 51.5
Eucgr.G02521 Eucalyptus grandis HOM05D007070 ORTHO05D008892 1.0e-34 150.6 174 51.7
Aqoxy3G03327 Aquilegia oxysepala HOM05D007070 ORTHO05D008892 2.2e-34 149.4 175 53.1
CAN.G375.28 Capsicum annuum HOM05D007070 ORTHO05D008892 2.9e-34 149.1 149 57.0
Sopen01g006270 Solanum pennellii HOM05D007070 ORTHO05D008892 3.8e-34 148.7 193 51.8
Psat2g122360 Pisum sativum HOM05D007070 ORTHO05D008892 5.0e-34 148.3 168 53.6
Lsat_1_v5_gn_8_52140 Lactuca sativa HOM05D007070 ORTHO05D008892 8.5e-34 147.5 160 54.4
Medtr5g038970 Medicago truncatula HOM05D007070 ORTHO05D008892 8.5e-34 147.5 199 50.3
Solyc01g010640.3 Solanum lycopersicum HOM05D007070 ORTHO05D008892 8.5e-34 147.5 191 51.3
PGSC0003DMG400000874 Solanum tuberosum HOM05D007070 ORTHO05D008892 2.5e-33 146.0 198 50.0
PSO832G2327 Papaver somniferum HOM05D007070 ORTHO05D008892 4.2e-33 145.2 161 54.0
CDE05G3062 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 1.2e-32 143.7 164 53.0
MBI05_g00391_MAGBIO Magnolia biondii HOM05D007070 ORTHO05D008892 1.2e-32 143.7 172 54.1
ECA236G0127 Erigeron canadensis HOM05D007070 ORTHO05D008892 2.1e-32 142.9 163 52.1
HanXRQChr08g0209191 Helianthus annuus HOM05D007070 ORTHO05D008892 2.1e-32 142.9 149 54.4
PSO591G0158 Papaver somniferum HOM05D007070 ORTHO05D008892 2.1e-32 142.9 202 49.0
THA.LOC104805942 Tarenaya hassleriana HOM05D007070 ORTHO05D008892 2.1e-32 142.9 121 62.8
ATR0564G356 Amborella trichopoda HOM05D007070 ORTHO05D008892 4.6e-32 141.7 176 50.6
Ca_04760_v3 Cicer arietinum L. HOM05D007070 ORTHO05D008892 6.1e-32 141.4 199 47.2
TPR.G36542 Trifolium pratense HOM05D007070 ORTHO05D008892 2.5e-30 136.0 116 61.2
BcaC05g25332 Brassica carinata HOM05D007070 ORTHO05D008892 5.7e-30 134.8 125 58.4
HPP92_018595 Vanilla planifolia HOM05D007070 ORTHO05D008892 8.2e-29 131.0 167 47.3
CDE05G3277 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 4.1e-28 128.6 120 57.5
unitig_699.g19919 Utricularia gibba HOM05D007070 ORTHO05D008892 6.9e-28 127.9 178 46.1
Aa31LG1G700 Aethionema arabicum HOM05D007070 ORTHO05D008892 1.2e-27 127.1 171 45.6
Os03g0170500 Oryza sativa ssp. japonica HOM05D007070 ORTHO05D008892 1.2e-27 127.1 113 60.2
HPP92_018585 Vanilla planifolia HOM05D007070 ORTHO05D008892 1.5e-27 126.7 174 44.8
Zm00001eb402240 Zea mays HOM05D007070 ORTHO05D008892 2.0e-27 126.3 113 58.4
MSTRG.684 Avicennia marina HOM05D007070 ORTHO05D008892 7.7e-27 124.4 191 42.9
SEGI_28311 Sequoiadendron giganteum HOM05D007070 ORTHO05D008892 4.2e-25 118.6 130 52.3
AagrBONN_evm.TU.Sc2ySwM_362.2904 Anthoceros agrestis HOM05D007070 ORTHO05D008892 6.1e-24 114.8 131 45.8
SMO329G0045 Selaginella moellendorffii HOM05D007070 ORTHO05D008892 7.9e-24 114.4 115 52.2
Mapoly0002s0258 Marchantia polymorpha HOM05D007070 ORTHO05D008892 1.8e-20 103.2 139 44.6
CBR_g47945 Chara braunii HOM05D007070 ORTHO05D008892 4.1e-20 102.1 110 46.4
Atru.chr2.2148 Acer truncatum HOM05D007070 ORTHO05D008892 3.3e-14 82.4 47 78.7
Cre08.g358540 Chlamydomonas reinhardtii HOM05D007070 ORTHO05D008892 1.4e-12 77.0 127 32.3
MCO16G462 Micromonas commoda HOM05D007070 ORTHO05D008892 2.9e-10 69.3 112 31.2
PRCOL_00004582 Prasinoderma coloniale HOM05D007070 ORTHO05D008892 7.2e-09 64.7 104 35.6


User provided reference genes

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