Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 2.5e-203 711.8 350 100.0
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 2.8e-117 426.0 350 58.0
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 6.2e-117 424.9 350 58.3
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 4.0e-116 422.2 348 56.9
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 6.8e-116 421.4 349 57.6
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 1.5e-115 420.2 335 58.8
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 1.5e-115 420.2 349 57.0
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 3.4e-115 419.1 333 59.5
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 4.4e-115 418.7 335 59.1
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 1.7e-114 416.8 340 57.9
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 3.7e-114 415.6 349 55.9
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 4.9e-114 415.2 292 62.3
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 1.1e-113 414.1 336 58.3
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 1.1e-113 414.1 309 60.5
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 1.9e-113 413.3 350 56.9
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 1.9e-113 413.3 350 56.3
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 4.1e-113 412.1 348 56.3
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 4.1e-113 412.1 351 55.8
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 9.2e-113 411.0 335 57.3
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 9.2e-113 411.0 350 57.4
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.2e-112 410.6 347 56.8
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 2.1e-112 409.8 339 57.8
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 2.7e-112 409.5 336 57.4
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 2.7e-112 409.5 334 57.5
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 3.5e-112 409.1 349 53.6
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 4.6e-112 408.7 347 56.2
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 6.0e-112 408.3 349 54.2
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.7e-111 406.8 347 55.9
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 3.9e-111 405.6 322 58.1
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 3.9e-111 405.6 333 58.0
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 5.0e-111 405.2 351 57.3
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 6.6e-111 404.8 347 55.9
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 6.6e-111 404.8 297 63.3
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 6.6e-111 404.8 297 63.0
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 6.6e-111 404.8 335 57.0
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 8.6e-111 404.4 350 56.0
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 1.5e-110 403.7 350 55.7
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 1.5e-110 403.7 344 55.8
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 2.5e-110 402.9 337 55.2
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 3.3e-110 402.5 335 57.0
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 3.3e-110 402.5 344 55.2
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 3.3e-110 402.5 297 63.0
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 3.3e-110 402.5 335 55.8
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 4.3e-110 402.1 350 55.7
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 9.5e-110 401.0 346 54.3
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 9.5e-110 401.0 350 54.6
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 2.1e-109 399.8 347 55.3
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 2.8e-109 399.4 312 58.7
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 2.8e-109 399.4 334 56.9
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 1.8e-108 396.7 334 56.6
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 2.3e-108 396.4 355 53.5
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 3.1e-108 396.0 329 57.4
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 3.1e-108 396.0 350 55.1
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 4.0e-108 395.6 312 58.0
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 4.0e-108 395.6 352 53.7
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 4.0e-108 395.6 338 55.3
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 6.8e-108 394.8 348 53.7
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 8.9e-108 394.4 350 56.0
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 5.8e-107 391.7 350 52.9
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 1.3e-106 390.6 289 60.6
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 3.7e-106 389.0 293 60.1
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 4.9e-106 388.7 331 55.3
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 8.3e-106 387.9 297 59.3
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 1.1e-105 387.5 332 57.5
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 1.2e-104 384.0 364 53.8
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 3.5e-104 382.5 304 56.9
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 1.3e-103 380.6 350 53.7
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 1.7e-103 380.2 350 52.9
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 3.9e-103 379.0 342 52.9
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 3.9e-103 379.0 329 55.9
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 5.1e-103 378.6 307 57.3
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 5.1e-103 378.6 350 52.3
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 1.1e-102 377.5 329 56.2
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 1.5e-102 377.1 292 60.3
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 1.9e-102 376.7 328 54.0
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 1.9e-102 376.7 350 49.4
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 3.3e-102 375.9 280 60.7
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 3.3e-102 375.9 332 55.4
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 5.6e-102 375.2 342 50.3
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 7.3e-102 374.8 347 51.6
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 2.1e-101 373.2 332 51.8
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 1.8e-100 370.2 354 50.8
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 3.1e-100 369.4 353 51.8
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 6.8e-100 368.2 354 50.8
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 4.4e-99 365.5 329 52.6
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 6.4e-98 361.7 308 53.2
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 2.4e-97 359.8 346 50.9
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 2.4e-97 359.8 346 50.9
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 2.4e-97 359.8 336 50.6
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 7.1e-97 358.2 348 51.4
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 9.2e-97 357.8 346 51.2
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 2.7e-96 356.3 329 52.0
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 1.3e-95 354.0 350 48.9
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 1.3e-95 354.0 332 52.1
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 2.5e-94 349.7 348 49.4
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 2.1e-93 346.7 346 48.8
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 2.1e-93 346.7 346 48.8
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 1.4e-92 344.0 346 48.8
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 2.1e-88 330.1 297 52.2
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 4.3e-86 322.4 336 48.5
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 4.0e-84 315.8 313 49.2
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 2.6e-83 313.2 334 49.4
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 6.0e-80 302.0 253 53.8
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 2.1e-77 293.5 333 46.5
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 2.4e-76 290.0 349 43.8
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 2.0e-75 287.0 351 43.9
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 1.7e-74 283.9 277 52.0
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 2.2e-74 283.5 297 47.1
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 4.6e-72 275.8 349 41.8
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 1.8e-71 273.9 296 44.9
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 8.7e-71 271.6 221 56.1
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 9.0e-68 261.5 364 39.0
MD17G1140700 Malus domestica HOM05D005299 ORTHO05D006621 9.4e-57 224.9 302 40.7
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 8.2e-53 211.8 295 39.0
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 1.8e-52 210.7 179 50.3
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.0e-50 204.9 288 36.8
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.2e-50 203.8 288 36.8
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.0e-47 193.4 332 34.3
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.1e-47 192.6 309 36.2
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 4.4e-46 189.5 289 33.9
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.4e-46 188.7 340 32.4
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 4.8e-45 186.0 153 56.2
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 3.1e-44 183.3 282 35.5
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.2e-42 177.2 334 33.2
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.8e-42 176.4 304 34.9
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.2e-41 172.9 292 33.9
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.2e-41 172.9 297 34.7
AagrBONN_evm.TU.Sc2ySwM_117.3041__3042 Anthoceros agrestis HOM05D005299 ORTHO05D006621 9.4e-41 171.8 306 34.3
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.1e-40 170.6 338 31.7
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.7e-40 170.2 281 35.6
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 2.7e-40 170.2 294 34.7
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.4e-39 167.9 237 38.0
AagrBONN_evm.TU.Sc2ySwM_368.682 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.6e-35 153.7 345 30.1
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.7e-34 151.0 346 29.5
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 5.5e-33 146.0 314 30.9
AagrBONN_evm.TU.Sc2ySwM_368.683 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.6e-32 143.3 345 29.0
AagrBONN_evm.TU.Sc2ySwM_368.684 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.3e-29 134.8 271 31.7
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 1.5e-22 111.3 278 27.0
CBR_g37320 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-14 84.0 63 54.0
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 7.5e-14 82.4 153 32.7
Cre04.g231810 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 2.7e-11 73.9 113 33.6
HanXRQChr17g0539561 Helianthus annuus HOM05D005299 ORTHO05D006621 6.6e-10 69.3 42 61.9
ECA233G3003 Erigeron canadensis HOM05D000038 ORTHO05D000423 1.5e-09 68.2 89 36.0


User provided reference genes

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