Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 2.0e-101 372.5 189 100.0
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 1.2e-85 320.1 189 83.1
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 1.7e-84 316.2 188 81.9
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 1.7e-84 316.2 188 81.9
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 2.7e-82 308.9 189 81.0
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 3.5e-82 308.5 188 80.9
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 1.3e-81 306.6 186 79.6
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 1.1e-80 303.5 189 78.3
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 4.2e-80 301.6 186 79.0
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 4.2e-80 301.6 186 79.0
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 4.2e-80 301.6 186 78.5
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 4.2e-80 301.6 187 79.7
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 5.5e-80 301.2 189 78.3
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 9.5e-80 300.4 189 77.8
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 1.2e-79 300.1 186 79.0
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.2e-79 300.1 185 77.3
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.2e-79 300.1 185 77.3
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 2.1e-79 299.3 189 77.2
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 2.1e-79 299.3 189 77.2
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 2.1e-79 299.3 189 77.2
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 1.0e-78 297.0 189 76.7
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 1.8e-78 296.2 189 77.2
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 8.9e-78 293.9 189 74.6
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 3.4e-77 292.0 187 77.0
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 3.4e-77 292.0 187 75.4
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 1.3e-76 290.0 186 75.8
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 1.7e-76 289.7 186 76.3
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 2.2e-76 289.3 187 73.8
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 2.8e-76 288.9 187 74.3
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 3.7e-76 288.5 189 74.6
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 3.7e-76 288.5 190 74.2
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 6.3e-76 287.7 207 70.0
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 8.3e-76 287.3 187 76.5
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 8.3e-76 287.3 189 75.1
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 1.4e-75 286.6 204 71.6
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 5.4e-75 284.6 183 75.4
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 9.2e-75 283.9 182 76.4
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 1.2e-74 283.5 185 75.7
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 1.2e-74 283.5 187 72.7
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 1.6e-74 283.1 189 71.4
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 2.0e-74 282.7 187 73.8
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 3.5e-74 282.0 187 73.8
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 4.5e-74 281.6 189 72.5
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 7.8e-74 280.8 189 70.4
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 1.0e-73 280.4 186 73.1
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 1.3e-73 280.0 182 73.6
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 2.3e-73 279.3 189 70.9
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 2.3e-73 279.3 189 73.0
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 2.9e-73 278.9 189 71.4
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 5.0e-73 278.1 188 72.9
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 3.3e-72 275.4 185 73.0
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 4.3e-72 275.0 186 73.1
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 9.5e-72 273.9 188 72.9
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 9.5e-72 273.9 184 73.4
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 1.2e-71 273.5 185 71.4
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 2.1e-71 272.7 189 73.0
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 2.1e-71 272.7 186 70.4
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 2.1e-71 272.7 209 66.5
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 3.6e-71 271.9 182 73.1
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 3.6e-71 271.9 189 72.5
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 3.6e-71 271.9 189 72.5
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 4.7e-71 271.6 182 72.5
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 6.1e-71 271.2 189 69.8
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 6.1e-71 271.2 185 72.4
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 1.0e-70 270.4 271 55.7
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 2.3e-70 269.2 189 70.4
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 4.0e-70 268.5 189 71.4
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 5.2e-70 268.1 189 69.8
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 8.9e-70 267.3 186 71.0
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 2.0e-69 266.2 159 81.8
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 3.4e-69 265.4 189 72.5
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 3.4e-69 265.4 189 70.4
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 5.8e-69 264.6 187 68.4
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.7e-68 263.1 186 70.4
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.7e-68 263.1 189 70.4
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 2.2e-68 262.7 189 68.8
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.9e-68 262.3 186 70.4
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 1.1e-67 260.4 206 65.0
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 1.9e-67 259.6 178 70.8
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 2.4e-67 259.2 185 69.7
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 2.4e-67 259.2 188 67.6
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 2.4e-67 259.2 189 67.2
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 3.2e-67 258.8 183 69.9
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 4.1e-67 258.5 203 65.0
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 7.0e-67 257.7 203 65.0
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 9.2e-67 257.3 185 66.5
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 2.0e-66 256.1 184 68.5
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 4.6e-66 255.0 185 69.2
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 4.6e-66 255.0 152 82.2
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 3.9e-65 251.9 187 65.8
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 5.0e-65 251.5 189 65.1
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 6.6e-65 251.1 182 65.9
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 1.1e-64 250.4 189 65.1
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 1.9e-64 249.6 182 65.4
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 4.3e-64 248.4 188 66.0
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 1.6e-63 246.5 182 64.8
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 2.8e-63 245.7 195 63.1
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 2.3e-62 242.7 157 75.2
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.5e-61 240.0 178 64.0
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 9.2e-59 230.7 163 71.2
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 7.8e-58 227.6 186 59.1
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 1.5e-53 213.4 185 57.3
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 6.4e-52 208.0 182 56.0
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 7.1e-51 204.5 185 54.6
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 7.1e-51 204.5 182 56.6
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 3.5e-50 202.2 185 54.6
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 6.0e-50 201.4 207 54.1
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 6.0e-50 201.4 185 60.0
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 1.3e-49 200.3 185 55.1
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 8.6e-49 197.6 185 54.1
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 4.7e-47 191.8 182 53.8
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 8.1e-47 191.0 175 62.3
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 4.0e-46 188.7 182 53.8
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 2.6e-45 186.0 182 52.7
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 7.6e-45 184.5 182 52.2
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 7.6e-45 184.5 182 52.2
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 7.6e-45 184.5 182 52.2
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 3.2e-43 179.1 182 51.1
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 2.7e-42 176.0 182 50.0
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 2.7e-42 176.0 182 50.0
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 2.8e-39 166.0 148 56.8
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 3.6e-39 165.6 112 77.7
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 7.8e-34 147.9 182 46.2
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.7e-33 146.7 155 54.2
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 9.6e-32 141.0 110 65.5
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 1.6e-26 123.6 78 71.8
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 2.1e-26 123.2 84 71.4
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 6.0e-26 121.7 80 73.8
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 1.9e-24 116.7 73 74.0
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 9.6e-24 114.4 87 60.9
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 3.1e-22 109.4 86 66.3
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 7.6e-21 104.8 155 40.0
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.7e-20 103.6 76 61.8
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.9e-20 102.8 81 60.5
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 4.9e-20 102.1 76 60.5
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 1.9e-19 100.1 151 39.7
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 1.6e-18 97.1 159 33.3
RcHm_v2.0_Chr7g0220351 Rosa chinensis HOM05D005262 ORTHO05D006590 5.1e-17 92.0 61 73.8
Mapoly0001s0053 Marchantia polymorpha HOM05D005262 ORTHO05D006590 6.7e-17 91.7 119 40.3
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 1.8e-14 83.6 97 50.5
Eucgr.L00657 Eucalyptus grandis HOM05D005262 ORTHO05D006590 2.6e-13 79.7 90 55.6
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 7.6e-13 78.2 66 63.6
Zm00001eb076020 Zea mays HOM05D005262 ORTHO05D444176 4.3e-08 62.4 45 62.2


User provided reference genes

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