Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 3.4e-82 308.5 157 100.0
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 2.8e-28 129.4 135 57.0
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 3.1e-27 125.9 157 48.4
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 7.6e-26 121.3 158 47.5
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 7.6e-26 121.3 156 48.1
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 9.9e-26 120.9 143 53.8
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 1.7e-25 120.2 139 52.5
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 3.8e-25 119.0 142 51.4
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 6.4e-25 118.2 139 50.4
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 6.4e-25 118.2 153 52.3
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 8.4e-25 117.9 153 52.3
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.2e-24 115.9 152 52.0
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 4.2e-24 115.5 152 51.3
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 4.2e-24 115.5 152 49.3
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 1.2e-23 114.0 157 46.5
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 2.1e-23 113.2 134 50.0
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 4.6e-23 112.1 124 54.8
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 1.0e-22 110.9 141 49.6
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 1.3e-22 110.5 139 51.1
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 1.5e-21 107.1 135 47.4
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 7.4e-21 104.8 142 49.3
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 1.3e-20 104.0 141 44.0
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 2.8e-20 102.8 149 45.0
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 3.7e-20 102.4 171 45.0
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 3.7e-20 102.4 126 49.2
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.1e-19 100.9 136 48.5
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 1.1e-19 100.9 151 45.0
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 2.4e-19 99.8 120 50.8
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 3.1e-19 99.4 130 49.2
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 3.1e-19 99.4 130 49.2
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 4.0e-19 99.0 150 40.0
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 4.0e-19 99.0 151 47.0
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 9.0e-19 97.8 146 47.3
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 1.5e-18 97.1 142 47.2
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 3.4e-18 95.9 160 43.8
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 3.4e-18 95.9 135 45.9
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 4.5e-18 95.5 106 57.5
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 4.5e-18 95.5 130 49.2
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 4.5e-18 95.5 126 49.2
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 5.8e-18 95.1 135 47.4
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 5.8e-18 95.1 132 45.5
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 1.0e-17 94.4 149 39.6
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 1.0e-17 94.4 149 40.9
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 1.3e-17 94.0 149 39.6
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 1.3e-17 94.0 131 46.6
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 1.7e-17 93.6 145 39.3
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 1.7e-17 93.6 145 39.3
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 1.7e-17 93.6 145 39.3
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.7e-17 93.6 152 39.5
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 1.7e-17 93.6 132 44.7
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 1.7e-17 93.6 160 41.2
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.2e-17 93.2 66 72.7
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 2.2e-17 93.2 147 40.8
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 2.9e-17 92.8 147 42.2
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 3.8e-17 92.4 149 37.6
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 4.9e-17 92.0 147 38.8
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 4.9e-17 92.0 169 42.0
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 4.9e-17 92.0 129 46.5
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 4.9e-17 92.0 161 44.1
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 6.5e-17 91.7 162 42.6
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 6.5e-17 91.7 139 46.8
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 6.5e-17 91.7 128 45.3
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 6.5e-17 91.7 124 46.0
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 8.4e-17 91.3 140 45.7
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 1.4e-16 90.5 158 36.7
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 1.4e-16 90.5 148 37.8
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 1.4e-16 90.5 128 48.4
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.9e-16 90.1 147 37.4
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 1.9e-16 90.1 146 41.8
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.9e-16 90.1 135 45.9
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 2.5e-16 89.7 127 44.1
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 3.2e-16 89.4 141 42.6
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 3.2e-16 89.4 155 38.1
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 4.2e-16 89.0 128 44.5
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 5.5e-16 88.6 80 60.0
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 7.1e-16 88.2 126 42.1
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 7.1e-16 88.2 134 47.0
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 9.3e-16 87.8 143 41.3
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 9.3e-16 87.8 134 47.0
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 1.2e-15 87.4 161 39.1
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 1.6e-15 87.0 109 56.9
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 2.1e-15 86.7 143 40.6
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 2.1e-15 86.7 149 36.2
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 2.1e-15 86.7 149 36.2
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 2.7e-15 86.3 148 36.5
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 4.6e-15 85.5 141 40.4
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 4.6e-15 85.5 136 42.6
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 4.6e-15 85.5 136 42.6
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 4.6e-15 85.5 88 51.1
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 4.6e-15 85.5 102 48.0
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 1.0e-14 84.3 132 40.9
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.3e-14 84.0 147 40.1
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 2.3e-14 83.2 77 55.8
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 2.3e-14 83.2 137 43.8
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 3.0e-14 82.8 147 41.5
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 3.9e-14 82.4 95 48.4
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 5.1e-14 82.0 141 39.0
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 5.1e-14 82.0 129 42.6
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 5.1e-14 82.0 132 42.4
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 5.1e-14 82.0 147 40.1
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 8.7e-14 81.3 133 43.6
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.1e-13 80.9 151 39.1
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 1.1e-13 80.9 139 44.6
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.5e-13 79.7 132 42.4
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 2.5e-13 79.7 129 45.7
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 3.3e-13 79.3 180 35.6
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 4.3e-13 79.0 120 41.7
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 4.3e-13 79.0 171 36.8
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 4.3e-13 79.0 135 40.7
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 5.7e-13 78.6 142 38.0
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 7.4e-13 78.2 158 37.3
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 9.7e-13 77.8 141 38.3
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 9.7e-13 77.8 127 43.3
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 9.7e-13 77.8 126 40.5
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 1.6e-12 77.0 126 42.1
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 2.8e-12 76.3 137 43.1
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.8e-12 76.3 78 56.4
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 3.7e-12 75.9 111 44.1
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 3.7e-12 75.9 159 37.1
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 4.8e-12 75.5 70 57.1
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 4.8e-12 75.5 110 44.5
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 6.3e-12 75.1 69 58.0
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 8.2e-12 74.7 129 39.5
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 8.2e-12 74.7 147 40.8
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 1.1e-11 74.3 83 53.0
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 1.1e-11 74.3 92 48.9
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 3.1e-11 72.8 74 52.7
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 3.1e-11 72.8 144 40.3
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 3.1e-11 72.8 138 39.1
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 5.3e-11 72.0 74 51.4
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 5.3e-11 72.0 74 51.4
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 5.3e-11 72.0 96 44.8
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 5.3e-11 72.0 91 46.2
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 6.9e-11 71.6 126 41.3
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 9.0e-11 71.2 89 46.1
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 1.5e-10 70.5 145 38.6
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 1.5e-10 70.5 148 38.5
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.4e-10 69.3 159 34.0
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 4.5e-10 68.9 137 36.5
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 4.5e-10 68.9 132 36.4
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 4.5e-10 68.9 120 43.3
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 7.7e-10 68.2 90 46.7
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 2.9e-09 66.2 128 40.6
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 3.8e-09 65.9 135 40.0
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 3.8e-09 65.9 109 45.0
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 3.8e-09 65.9 129 38.8
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 5.0e-09 65.5 108 44.4
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 5.0e-09 65.5 76 51.3
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 5.0e-09 65.5 70 50.0
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 6.5e-09 65.1 90 45.6
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 1.4e-08 63.9 129 39.5
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 1.9e-08 63.5 130 40.0
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 1.9e-08 63.5 78 48.7
vmacro22463 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.9e-08 63.5 67 58.2
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 2.5e-08 63.2 158 34.2
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 2.5e-08 63.2 73 52.1
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 3.2e-08 62.8 140 35.0
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 4.2e-08 62.4 73 39.7
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 7.2e-08 61.6 88 36.4
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 7.2e-08 61.6 112 38.4
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 7.2e-08 61.6 86 41.9
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 7.2e-08 61.6 134 37.3
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 9.4e-08 61.2 125 38.4
THA.LOC104805946 Tarenaya hassleriana HOM05D003853 ORTHO05D004171 9.4e-08 61.2 93 41.9
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 2.1e-07 60.1 148 35.8
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 2.1e-07 60.1 79 41.8
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 3.6e-07 59.3 76 43.4
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 6.1e-07 58.5 153 35.3
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 6.1e-07 58.5 75 48.0
Medtr5g043660 Medicago truncatula HOM05D003853 ORTHO05D004171 7.9e-07 58.2 140 35.0
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 1.4e-06 57.4 115 38.3
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 1.4e-06 57.4 126 38.1
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 1.8e-06 57.0 125 36.8
ATR0579G128 Amborella trichopoda HOM05D003853 ORTHO05D004171 2.3e-06 56.6 59 52.5
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 5.1e-06 55.5 87 40.2


User provided reference genes

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