Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 1.8e-129 466.1 267 100.0
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 1.0e-31 141.4 305 47.5
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 7.0e-28 128.6 313 44.1
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.3e-26 124.4 321 37.4
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.3e-26 124.4 318 43.7
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.3e-26 124.4 318 43.7
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.7e-26 124.0 318 43.4
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 3.8e-26 122.9 343 44.0
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 8.5e-26 121.7 318 44.3
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.1e-25 121.3 324 44.1
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 2.5e-25 120.2 300 43.3
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 3.2e-25 119.8 321 43.6
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 4.2e-25 119.4 275 46.9
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 2.7e-24 116.7 279 45.5
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.0e-23 114.8 315 37.1
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.0e-23 114.8 324 43.8
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 1.4e-23 114.4 324 42.6
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 4.0e-23 112.8 294 44.6
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 8.8e-23 111.7 318 41.5
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 8.8e-23 111.7 317 41.6
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 1.1e-22 111.3 322 41.6
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 1.5e-22 110.9 320 43.4
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 1.5e-22 110.9 296 41.9
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 2.0e-22 110.5 325 33.8
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 2.6e-22 110.2 320 42.5
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 2.6e-22 110.2 278 36.3
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 3.3e-22 109.8 291 44.7
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 3.3e-22 109.8 291 44.7
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 3.3e-22 109.8 320 42.8
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 3.3e-22 109.8 320 42.8
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.3e-22 109.8 277 46.9
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.3e-22 109.8 278 44.2
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 4.4e-22 109.4 299 44.1
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 7.5e-22 108.6 320 41.9
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 1.3e-21 107.8 321 41.1
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.3e-21 107.8 294 45.2
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.7e-21 107.5 319 41.7
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 2.2e-21 107.1 305 43.0
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 2.8e-21 106.7 326 34.4
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 4.8e-21 105.9 305 32.8
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 6.3e-21 105.5 295 41.7
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 8.2e-21 105.1 280 46.1
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 8.2e-21 105.1 294 44.2
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 1.1e-20 104.8 308 40.9
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 1.4e-20 104.4 323 41.8
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 4.1e-20 102.8 267 35.6
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 5.3e-20 102.4 319 42.6
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 7.0e-20 102.1 320 40.6
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.2e-19 101.3 324 35.5
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 1.2e-19 101.3 319 39.8
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 1.6e-19 100.9 320 42.8
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 1.6e-19 100.9 328 40.5
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 2.7e-19 100.1 333 41.4
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 5.9e-19 99.0 305 44.6
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 7.7e-19 98.6 320 37.5
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 1.3e-18 97.8 316 30.7
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.7e-18 97.4 290 45.9
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 5.0e-18 95.9 322 39.8
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 5.0e-18 95.9 287 40.8
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 5.0e-18 95.9 287 40.8
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 6.5e-18 95.5 328 40.9
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 8.5e-18 95.1 296 36.1
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 8.5e-18 95.1 322 40.4
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 8.5e-18 95.1 296 41.9
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 8.5e-18 95.1 296 41.9
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 8.5e-18 95.1 296 41.9
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 1.1e-17 94.7 317 40.7
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.5e-17 94.4 294 32.3
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 1.5e-17 94.4 324 40.7
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 1.5e-17 94.4 304 39.1
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 1.5e-17 94.4 275 34.2
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 1.9e-17 94.0 271 40.6
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 1.9e-17 94.0 324 40.4
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 2.5e-17 93.6 315 39.4
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 3.2e-17 93.2 321 42.4
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 4.2e-17 92.8 342 37.7
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 9.4e-17 91.7 327 39.1
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 9.4e-17 91.7 333 29.7
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 2.1e-16 90.5 335 29.3
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 2.7e-16 90.1 312 33.3
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 2.7e-16 90.1 307 35.8
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 3.6e-16 89.7 275 35.3
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 4.7e-16 89.4 298 36.9
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 4.7e-16 89.4 271 34.3
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 6.1e-16 89.0 306 36.9
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 8.0e-16 88.6 301 37.2
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 8.0e-16 88.6 332 33.4
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 1.0e-15 88.2 352 36.6
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 1.4e-15 87.8 326 35.9
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 1.8e-15 87.4 302 36.1
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.3e-15 87.0 293 44.4
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 3.0e-15 86.7 305 37.0
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 4.0e-15 86.3 312 36.9
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 4.0e-15 86.3 337 28.2
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 6.8e-15 85.5 333 35.7
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 8.8e-15 85.1 325 29.5
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 1.2e-14 84.7 317 38.5
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 1.5e-14 84.3 308 36.7
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 1.5e-14 84.3 294 37.4
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 2.0e-14 84.0 304 37.2
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 2.6e-14 83.6 319 38.6
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 2.6e-14 83.6 320 30.6
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 3.4e-14 83.2 294 38.1
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 3.4e-14 83.2 304 37.2
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 5.7e-14 82.4 309 37.2
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 7.5e-14 82.0 336 33.6
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 7.5e-14 82.0 356 36.0
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 1.3e-13 81.3 309 36.9
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 1.3e-13 81.3 306 37.3
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 1.3e-13 81.3 309 36.9
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 2.2e-13 80.5 311 36.3
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 2.8e-13 80.1 287 39.4
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 2.8e-13 80.1 284 34.5
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 2.8e-13 80.1 308 40.3
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 3.7e-13 79.7 354 37.9
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 6.3e-13 79.0 311 36.0
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.4e-12 77.8 219 50.7
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 1.4e-12 77.8 354 37.6
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.4e-12 77.8 297 40.7
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 3.1e-12 76.6 273 31.9
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 4.1e-12 76.3 283 37.5
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 7.0e-12 75.5 272 41.9
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 9.1e-12 75.1 289 31.5
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 1.2e-11 74.7 308 36.4
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 1.6e-11 74.3 301 39.2
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 1.6e-11 74.3 325 35.4
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.7e-11 73.6 174 52.3
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 4.5e-11 72.8 302 37.4
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 4.5e-11 72.8 180 48.9
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 5.9e-11 72.4 309 36.6
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 1.7e-10 70.9 251 44.6
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 2.2e-10 70.5 328 31.7
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 8.5e-10 68.6 293 40.3
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 3.2e-09 66.6 278 29.5
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 1.2e-08 64.7 306 29.4
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 8.0e-08 62.0 269 41.3
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 4.0e-07 59.7 310 28.7
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 8.8e-07 58.5 60 58.3
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 1.5e-06 57.8 307 32.2


User provided reference genes

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