Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 0.0e+00 1620.5 927 100.0
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 3.1e-293 1011.9 925 63.6
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 4.1e-293 1011.5 949 65.3
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 1.3e-291 1006.5 932 67.8
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 2.2e-291 1005.7 931 64.2
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 3.0e-288 995.3 943 65.4
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.5e-287 993.0 938 64.9
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 9.7e-287 990.3 934 62.6
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 2.8e-286 988.8 925 63.2
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 2.8e-286 988.8 939 62.0
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 1.4e-285 986.5 931 62.5
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 4.1e-285 984.9 939 61.8
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 1.3e-283 979.9 935 62.8
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 1.5e-282 976.5 939 61.4
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 1.0e-280 970.3 949 62.1
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 3.0e-280 968.8 949 62.8
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 4.0e-280 968.4 944 62.3
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 1.2e-279 966.8 944 62.8
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 5.7e-279 964.5 938 63.6
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 1.7e-278 963.0 949 61.6
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 9.1e-277 957.2 951 61.4
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 1.0e-275 953.7 947 61.4
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 2.2e-275 952.6 946 63.0
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 1.4e-272 943.3 989 58.2
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 2.3e-272 942.6 940 63.6
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 4.0e-272 941.8 937 59.4
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 9.8e-271 937.2 934 59.5
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 5.4e-269 931.4 947 60.3
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 3.8e-267 925.2 960 58.5
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 3.8e-267 925.2 960 58.5
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 8.6e-267 924.1 946 57.8
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 7.3e-266 921.0 926 58.1
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 6.1e-265 917.9 958 59.9
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 4.4e-263 911.8 1057 53.8
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 4.4e-263 911.8 940 60.0
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 4.4e-263 911.8 948 59.5
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 3.7e-262 908.7 936 59.4
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 1.4e-261 906.7 948 57.9
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 2.0e-260 902.9 948 57.2
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 3.0e-259 899.0 950 58.2
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 3.6e-257 892.1 852 62.3
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 6.2e-257 891.3 949 58.7
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 6.8e-256 887.9 969 58.3
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 2.7e-252 875.9 938 59.3
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 1.0e-251 874.0 958 58.9
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 1.7e-251 873.2 990 57.5
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 3.0e-251 872.5 903 59.2
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 9.5e-250 867.5 944 57.0
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 1.4e-248 863.6 947 57.0
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 1.2e-247 860.5 939 54.8
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 2.6e-247 859.4 934 57.5
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 1.3e-246 857.1 950 56.3
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 3.7e-246 855.5 947 55.1
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 1.4e-245 853.6 942 57.3
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 1.9e-245 853.2 979 55.0
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 4.6e-244 848.6 936 57.3
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 7.8e-244 847.8 942 54.5
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 2.3e-243 846.3 942 55.2
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 7.3e-242 841.3 947 54.9
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 1.6e-241 840.1 954 56.8
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 1.1e-240 837.4 1025 52.4
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 1.8e-240 836.6 943 57.7
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 1.2e-239 833.9 942 57.0
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 4.4e-239 832.0 941 53.9
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 9.9e-239 830.9 855 59.2
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 1.3e-238 830.5 942 55.0
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 4.1e-237 825.5 943 55.4
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 5.4e-237 825.1 940 56.0
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 5.4e-237 825.1 941 54.4
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 5.4e-237 825.1 935 57.2
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 1.6e-236 823.5 941 55.3
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 2.7e-236 822.8 966 53.3
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 7.8e-236 821.2 921 53.9
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 1.0e-235 820.8 933 54.0
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 1.3e-235 820.5 953 55.8
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 1.7e-235 820.1 955 53.9
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 1.5e-234 817.0 931 55.1
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 1.5e-234 817.0 950 55.3
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 7.3e-234 814.7 950 55.5
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 9.6e-234 814.3 942 53.9
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 9.6e-234 814.3 941 54.4
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 2.1e-233 813.1 941 57.1
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 2.8e-233 812.8 941 53.1
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 3.6e-233 812.4 963 53.2
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 6.2e-233 811.6 932 51.7
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 1.4e-232 810.4 943 54.3
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 8.9e-232 807.7 990 52.9
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 7.6e-231 804.7 946 53.4
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 1.7e-230 803.5 977 54.1
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 1.1e-226 790.8 947 52.6
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 8.7e-219 764.6 960 54.6
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 1.1e-218 764.2 873 53.4
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 4.1e-192 676.0 935 48.8
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 1.9e-189 667.2 824 54.9
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 1.8e-176 624.0 965 44.8
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 1.1e-173 614.8 933 43.8
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 8.0e-172 608.6 965 45.1
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 1.3e-153 548.1 444 62.6
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 7.3e-149 532.3 697 51.1
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 3.4e-146 523.5 629 60.7
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 1.3e-145 521.5 395 68.6
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 4.4e-130 469.9 585 53.3
Oeu063767.1 Olea europaea HOM05D004844 ORTHO05D006036 2.1e-127 461.1 519 57.6
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 3.1e-123 447.2 618 47.2
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 1.5e-114 418.3 898 37.6
SEGI_27898 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 3.4e-106 390.6 482 53.5
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 4.0e-91 340.5 619 39.9
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 9.7e-85 319.3 265 64.9
TAR623G0736 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.5e-77 295.4 332 58.7
TPR.G25179 Trifolium pratense HOM05D004844 ORTHO05D006036 3.8e-73 280.8 312 56.1
Haze_11873 Corylus avellana HOM05D004844 ORTHO05D006036 8.5e-73 279.6 300 60.0
SEGI_03778 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.3e-68 265.8 396 49.2
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 4.5e-66 257.3 262 53.4
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 3.2e-64 251.1 963 28.7
TAR623G0992 Trochodendron aralioides HOM05D004844 ORTHO05D006036 3.2e-64 251.1 327 57.2
Rhsim10G0117800 Rhododendron simsii HOM05D004844 ORTHO05D006036 6.7e-62 243.4 192 63.0
SEGI_13774 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.0e-58 231.9 273 48.4
Glyma.18G236167 Glycine max HOM05D004844 ORTHO05D006036 7.2e-56 223.4 245 58.4
HPP92_012261 Vanilla planifolia HOM05D004844 ORTHO05D006036 4.4e-53 214.2 384 42.4
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 5.3e-51 207.2 1141 27.0
EL10Ac3g06594 Beta vulgaris HOM05D004844 ORTHO05D006036 5.7e-37 160.6 99 78.8
EL10Ac6g14485 Beta vulgaris HOM05D004844 ORTHO05D006036 1.1e-32 146.4 114 67.5
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 1.9e-32 145.6 111 69.4
MCO13G646 Micromonas commoda HOM05D004844 ORTHO05D006036 1.2e-31 142.9 682 24.3
Actinidia04685 Actinidia chinensis HOM05D004844 ORTHO05D006036 3.6e-31 141.4 83 84.3
Actinidia04686 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.3e-30 138.7 85 82.4
AagrBONN_evm.TU.Sc2ySwM_362.1117 Anthoceros agrestis HOM05D004844 ORTHO05D006036 5.2e-30 137.5 324 39.5
Actinidia04727 Actinidia chinensis HOM05D004844 ORTHO05D006036 7.5e-29 133.7 132 61.4
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 4.6e-26 124.4 753 25.6
SEGI_11983 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 6.0e-26 124.0 134 50.7
unitig_62.g23698 Utricularia gibba HOM05D004844 ORTHO05D006036 6.0e-26 124.0 239 41.8
SEGI_26642 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.7e-25 122.5 149 51.0
Oeu048129.1 Olea europaea HOM05D004844 ORTHO05D006036 1.2e-23 116.3 349 35.5
BolC2t08646H Brassica oleracea HOM05D004844 ORTHO05D006036 1.7e-20 105.9 92 60.9
C02p25770 Brassica napus HOM05D004844 ORTHO05D006036 4.9e-20 104.4 92 60.9
SEGI_15727 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 8.3e-20 103.6 114 56.1
CAN.G1021.25 Capsicum annuum HOM05D004844 ORTHO05D006036 4.3e-16 91.3 208 32.7
Rhsim04G0143200 Rhododendron simsii HOM05D004844 ORTHO05D006036 5.6e-16 90.9 67 74.6
Actinidia27764 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.1e-15 89.0 52 84.6
TAR629G1217 Trochodendron aralioides HOM05D004844 ORTHO05D006036 6.2e-15 87.4 94 54.3
MD13G1058800 Malus domestica HOM05D004844 ORTHO05D006036 1.8e-14 85.9 72 68.1
Rhsim04G0142900 Rhododendron simsii HOM05D004844 ORTHO05D006036 8.9e-14 83.6 56 78.6
Actinidia04726 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.2e-13 83.2 52 82.7
Actinidia31976 Actinidia chinensis HOM05D004844 ORTHO05D006036 4.1e-11 74.7 46 80.4
Dinv34035 Davidia involucrata HOM05D004844 ORTHO05D006036 7.1e-11 73.9 150 40.7
RcHm_v2.0_Chr1g0340811 Rosa chinensis HOM05D004844 ORTHO05D006036 2.3e-09 68.9 58 60.3
Rhsim10G0117900 Rhododendron simsii HOM05D004844 ORTHO05D006036 3.0e-09 68.6 84 45.2
ATR0735G001 Amborella trichopoda HOM05D004844 ORTHO05D006036 3.3e-08 65.1 62 62.9
AagrBONN_evm.TU.Sc2ySwM_228.4285 Anthoceros agrestis HOM05D004844 ORTHO05D074214 8.1e-07 60.5 89 44.9
SEGI_23631 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 8.9e-06 57.0 48 68.8


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