Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 2.2e-199 698.7 348 100.0
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 4.0e-84 315.8 351 58.4
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 6.4e-82 308.5 378 55.0
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 9.6e-78 294.7 392 49.5
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 7.1e-73 278.5 405 44.2
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 3.9e-71 272.7 395 44.6
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 9.0e-68 261.5 375 44.0
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 1.5e-67 260.8 404 43.3
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 2.6e-67 260.0 374 44.1
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 1.3e-66 257.7 401 42.4
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 2.9e-66 256.5 401 44.1
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 7.1e-65 251.9 362 45.9
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 3.0e-63 246.5 409 41.3
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 1.5e-62 244.2 382 41.1
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 3.3e-62 243.0 370 43.8
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 5.6e-62 242.3 406 42.9
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 5.6e-62 242.3 406 42.9
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 1.6e-61 240.7 400 41.5
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 2.8e-61 240.0 380 42.6
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 3.6e-61 239.6 406 39.9
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 3.6e-61 239.6 400 40.5
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 1.8e-60 237.3 356 44.7
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 3.1e-60 236.5 354 42.9
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 4.0e-60 236.1 369 43.6
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 5.3e-60 235.7 403 40.9
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 2.6e-59 233.4 382 40.6
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 2.6e-59 233.4 374 41.7
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 7.6e-59 231.9 429 40.3
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 1.7e-58 230.7 434 40.8
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 6.4e-58 228.8 396 40.9
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 1.1e-57 228.0 414 37.9
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 4.2e-57 226.1 404 39.1
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 7.1e-57 225.3 401 39.9
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 2.7e-56 223.4 304 50.7
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 4.6e-56 222.6 419 38.2
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 6.0e-56 222.2 393 39.2
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 7.9e-56 221.9 393 39.2
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 1.0e-55 221.5 391 38.1
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.0e-55 221.5 366 42.6
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 3.9e-55 219.5 395 39.7
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 3.9e-55 219.5 416 38.9
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 1.1e-54 218.0 240 53.8
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 1.5e-54 217.6 386 39.4
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 7.4e-54 215.3 387 39.8
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 7.4e-54 215.3 404 38.6
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 1.6e-53 214.2 350 44.0
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 6.2e-53 212.2 419 37.2
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 1.4e-52 211.1 411 37.0
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.4e-52 211.1 410 38.3
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.4e-52 211.1 338 41.1
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 2.4e-52 210.3 381 38.6
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 2.4e-52 210.3 356 39.0
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 1.2e-51 208.0 360 40.6
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.2e-51 208.0 412 37.1
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 1.2e-51 208.0 388 37.4
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 2.6e-51 206.8 392 37.8
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.6e-51 206.8 420 36.7
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 5.8e-51 205.7 422 37.0
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 7.6e-51 205.3 422 37.0
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 7.6e-51 205.3 369 41.7
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 7.6e-51 205.3 369 41.7
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 2.2e-50 203.8 344 41.9
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 2.9e-50 203.4 343 41.7
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 3.8e-50 203.0 349 40.4
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.4e-49 201.1 399 36.3
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 3.2e-49 199.9 398 36.4
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.6e-48 197.6 402 36.1
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 1.0e-47 194.9 344 40.4
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 6.7e-47 192.2 406 40.6
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 6.7e-47 192.2 364 41.5
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 1.1e-46 191.4 396 38.9
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 1.6e-45 187.6 366 41.3
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.1e-44 184.9 356 36.8
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 2.4e-44 183.7 332 38.3
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 6.9e-44 182.2 355 39.7
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 6.9e-44 182.2 369 39.3
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.2e-43 181.4 356 36.5
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.2e-43 181.4 356 36.5
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 2.6e-43 180.3 340 38.2
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 4.5e-43 179.5 356 35.4
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 1.0e-42 178.3 398 37.4
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 1.7e-42 177.6 334 38.0
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 2.2e-42 177.2 365 40.8
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 2.2e-42 177.2 379 37.2
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 3.8e-42 176.4 424 34.7
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 3.8e-42 176.4 355 41.1
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 3.2e-41 173.3 343 36.4
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 3.2e-41 173.3 343 36.4
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 4.2e-41 172.9 368 37.8
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 2.1e-40 170.6 338 38.5
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 2.1e-40 170.6 367 38.1
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 2.1e-40 170.6 367 38.1
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 2.1e-40 170.6 367 37.6
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 4.6e-40 169.5 335 36.1
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 1.8e-39 167.5 382 36.9
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 3.0e-39 166.8 448 33.9
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 6.7e-39 165.6 414 35.0
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 6.7e-39 165.6 333 36.3
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 1.5e-38 164.5 358 38.3
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 1.5e-38 164.5 358 38.3
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 3.7e-37 159.8 318 37.7
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 4.8e-37 159.5 406 37.2
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 1.1e-36 158.3 297 40.1
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 9.0e-36 155.2 389 36.2
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 1.4e-33 147.9 440 33.4
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 1.4e-33 147.9 355 36.1
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 4.2e-33 146.4 413 34.4
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 5.5e-33 146.0 239 40.6
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 3.6e-32 143.3 384 34.1
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.8e-31 141.0 376 33.0
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 6.7e-31 139.0 345 31.3
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 8.8e-31 138.7 388 34.3
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 3.3e-30 136.7 269 39.0
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 9.7e-30 135.2 415 30.1
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 2.8e-29 133.7 353 35.1
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 3.7e-29 133.3 353 35.1
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 8.2e-29 132.1 422 29.6
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 1.8e-28 131.0 375 33.9
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 5.3e-28 129.4 414 29.5
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 6.9e-28 129.0 462 28.6
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 1.2e-27 128.3 419 29.6
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 1.5e-27 127.9 383 33.2
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 1.5e-27 127.9 420 29.5
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 5.9e-27 125.9 249 43.0
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 1.3e-26 124.8 455 28.8
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 3.8e-26 123.2 354 33.6
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 2.5e-25 120.6 440 29.3
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 2.5e-25 120.6 340 34.1
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 9.4e-25 118.6 95 63.2
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 1.6e-24 117.9 449 29.0
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 2.1e-24 117.5 404 31.2
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 4.7e-24 116.3 362 32.3
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 1.0e-23 115.2 203 36.5
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 1.0e-23 115.2 280 38.6
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 7.4e-22 109.0 317 33.1
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 2.2e-21 107.5 438 29.9
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 1.4e-20 104.8 409 29.1
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 1.4e-20 104.8 209 39.7
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 1.6e-19 101.3 240 36.2
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 3.5e-19 100.1 404 29.0
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 3.5e-19 100.1 105 50.5
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 5.9e-19 99.4 401 28.9
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 1.7e-18 97.8 404 28.7
Ah.12g062580 Amaranthus hybridus HOM05D004568 ORTHO05D005343 1.2e-16 91.7 182 41.2
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 1.0e-15 88.6 218 36.2
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 3.0e-15 87.0 416 28.8
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 9.7e-14 82.0 302 31.1
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 1.7e-13 81.3 426 26.3
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 2.4e-12 77.4 229 31.4
unitig_699.g19898 Utricularia gibba HOM05D004568 ORTHO05D005343 2.0e-11 74.3 154 33.1
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 1.7e-10 71.2 124 37.1
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 5.0e-10 69.7 428 25.2
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 4.2e-09 66.6 409 25.9
SEGI_26556 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 4.7e-08 63.2 107 36.4
SGA_v2.0_scaffold14G06784 Striga asiatica HOM05D001314 ORTHO05D001165 1.2e-06 58.5 134 29.9


User provided reference genes

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