Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 9.5e-83 310.1 150 100.0
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 1.8e-57 226.1 140 74.3
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 2.4e-57 225.7 135 75.6
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 4.0e-57 224.9 135 75.6
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 6.8e-57 224.2 139 72.7
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.5e-56 223.0 139 71.9
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.0e-56 222.6 139 71.9
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 2.0e-56 222.6 139 73.4
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.8e-56 221.1 139 71.9
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 5.8e-56 221.1 140 73.6
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 5.8e-56 221.1 140 71.4
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 7.6e-56 220.7 143 72.7
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 9.9e-56 220.3 143 69.9
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 1.7e-55 219.5 133 75.9
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 2.9e-55 218.8 137 71.5
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 8.4e-55 217.2 134 73.1
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 1.9e-54 216.1 135 71.9
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 3.2e-54 215.3 141 74.5
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 4.1e-54 214.9 135 71.1
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 4.1e-54 214.9 149 67.8
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 1.2e-53 213.4 138 70.3
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 2.1e-53 212.6 156 66.0
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 3.5e-53 211.8 145 66.9
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 3.5e-53 211.8 141 70.2
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 6.0e-53 211.1 156 65.4
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 7.8e-53 210.7 141 70.2
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 1.0e-52 210.3 154 63.6
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 1.0e-52 210.3 154 63.6
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 1.0e-52 210.3 139 70.5
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 1.0e-52 210.3 136 71.3
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 1.7e-52 209.5 138 69.6
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 1.7e-52 209.5 142 66.9
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 2.3e-52 209.1 139 71.2
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 2.3e-52 209.1 141 68.8
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 5.1e-52 208.0 134 70.1
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 6.6e-52 207.6 137 69.3
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 6.6e-52 207.6 142 69.7
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 8.6e-52 207.2 135 70.4
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 8.6e-52 207.2 134 69.4
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 1.1e-51 206.8 135 69.6
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 2.5e-51 205.7 143 65.0
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 2.5e-51 205.7 143 65.0
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 2.5e-51 205.7 152 64.5
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 2.5e-51 205.7 138 72.5
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 3.3e-51 205.3 138 69.6
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 2.8e-50 202.2 136 71.3
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 3.6e-50 201.8 140 64.3
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 3.6e-50 201.8 152 64.5
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 4.7e-50 201.4 134 67.9
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 6.2e-50 201.1 138 68.8
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 8.1e-50 200.7 134 67.2
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 1.1e-49 200.3 134 68.7
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 1.4e-49 199.9 137 67.2
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 1.8e-49 199.5 141 65.2
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 3.1e-49 198.7 139 64.0
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 3.1e-49 198.7 137 67.2
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 3.1e-49 198.7 137 67.2
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 4.0e-49 198.4 136 68.4
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 4.0e-49 198.4 135 68.9
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 4.0e-49 198.4 135 68.9
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 4.0e-49 198.4 138 66.7
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 5.2e-49 198.0 135 68.9
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 9.0e-49 197.2 147 64.6
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.2e-48 196.8 139 64.0
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.2e-48 196.8 139 64.0
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 2.0e-48 196.1 134 66.4
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 2.0e-48 196.1 136 66.9
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.6e-48 195.7 137 67.9
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.6e-48 195.7 137 67.9
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 3.4e-48 195.3 135 68.1
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 3.4e-48 195.3 146 65.1
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 4.4e-48 194.9 135 68.1
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 4.4e-48 194.9 142 63.4
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 4.4e-48 194.9 146 63.0
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 4.4e-48 194.9 146 63.0
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 4.4e-48 194.9 146 63.0
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 5.8e-48 194.5 146 63.0
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 7.6e-48 194.1 145 62.1
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 9.9e-48 193.7 135 68.1
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 9.9e-48 193.7 148 62.2
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 1.3e-47 193.4 138 67.4
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 1.3e-47 193.4 136 66.2
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.3e-47 193.4 136 66.2
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.7e-47 193.0 186 52.7
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 2.9e-47 192.2 140 65.0
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 3.8e-47 191.8 138 64.5
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 3.8e-47 191.8 136 66.9
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 4.9e-47 191.4 146 60.3
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.9e-47 191.4 146 60.3
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 6.4e-47 191.0 138 65.2
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 6.4e-47 191.0 136 64.0
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 1.1e-46 190.3 134 64.2
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.1e-46 190.3 149 61.1
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 2.4e-46 189.1 136 65.4
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 2.4e-46 189.1 137 67.2
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 3.2e-46 188.7 149 61.1
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.2e-46 188.3 145 61.4
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 5.4e-46 188.0 137 66.4
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 7.1e-46 187.6 145 61.4
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 7.1e-46 187.6 135 66.7
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 7.1e-46 187.6 139 61.2
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 9.3e-46 187.2 135 60.7
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.2e-45 186.8 136 60.3
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 1.6e-45 186.4 151 60.3
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 2.1e-45 186.0 136 62.5
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.7e-45 185.7 139 64.7
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 4.6e-45 184.9 134 65.7
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 4.6e-45 184.9 137 61.3
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 1.7e-44 183.0 150 56.0
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 2.3e-44 182.6 139 61.2
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 3.0e-44 182.2 127 67.7
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 3.0e-44 182.2 129 65.1
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 3.9e-44 181.8 137 62.8
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 6.6e-44 181.0 145 58.6
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 1.1e-43 180.3 128 64.8
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 5.6e-43 177.9 139 61.2
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 7.3e-43 177.6 148 58.8
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.1e-42 176.0 136 61.0
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.1e-42 176.0 139 58.3
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 2.8e-42 175.6 141 54.6
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 2.8e-42 175.6 138 59.4
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 1.1e-41 173.7 146 53.4
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 1.1e-41 173.7 146 53.4
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 5.3e-41 171.4 137 59.9
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 6.9e-41 171.0 144 58.3
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 9.0e-41 170.6 149 53.0
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 2.6e-40 169.1 138 60.1
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 1.3e-39 166.8 152 53.9
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 1.3e-39 166.8 140 55.7
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 2.2e-39 166.0 139 57.6
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.1e-38 163.7 140 52.9
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.4e-38 163.3 143 55.9
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.9e-38 162.9 213 43.2
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 4.2e-38 161.8 97 72.2
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 5.4e-38 161.4 135 51.9
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 7.1e-38 161.0 136 53.7
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 1.6e-37 159.8 147 52.4
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 2.7e-37 159.1 149 56.4
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 2.7e-37 159.1 141 56.7
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 3.9e-36 155.2 152 49.3
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 1.5e-35 153.3 141 55.3
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 2.5e-35 152.5 133 56.4
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 2.8e-34 149.1 136 50.7
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 1.1e-33 147.1 139 49.6
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 1.4e-33 146.7 115 64.3
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 9.0e-33 144.1 138 50.0
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.5e-32 143.3 140 55.0
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 2.2e-31 139.4 140 52.1
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 1.1e-30 137.1 112 61.6
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 2.4e-30 136.0 96 62.5
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 9.3e-30 134.0 138 47.8
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 1.2e-29 133.7 145 45.5
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 1.1e-25 120.6 129 45.0
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 6.9e-25 117.9 125 52.0
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 2.2e-23 112.8 139 43.9
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 3.9e-20 102.1 115 45.2
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.1e-19 100.5 102 52.9
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.3e-18 97.1 72 55.6
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 2.4e-17 92.8 71 63.4
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.4e-16 89.0 79 62.0
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 1.3e-15 87.0 75 61.3
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 2.9e-15 85.9 57 75.4
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 1.1e-14 84.0 46 67.4
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 5.5e-14 81.6 45 68.9
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 5.5e-14 81.6 90 47.8
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 7.2e-14 81.3 98 43.9
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 1.7e-10 70.1 38 68.4
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 6.9e-09 64.7 63 54.0
FvH4_6g51211 Fragaria vesca HOM05D004290 ORTHO05D005025 1.9e-06 56.6 41 68.3
BcaB03g15846 Brassica carinata HOM05D004290 ORTHO05D005025 4.2e-06 55.5 72 47.2


User provided reference genes

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