Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0006570 Simmondsia chinensis HOM05D006863 ORTHO05D009101 8.4e-105 383.6 187 100.0
Prupe.1G308400 Prunus persica HOM05D006863 ORTHO05D009101 1.0e-78 297.0 180 77.8
Eucgr.G02336 Eucalyptus grandis HOM05D006863 ORTHO05D009101 3.9e-78 295.0 180 76.1
Lj3C1017T9 Lonicera japonica HOM05D006863 ORTHO05D009101 3.9e-78 295.0 183 74.9
DCAR_026725 Daucus carota HOM05D006863 ORTHO05D009101 6.7e-78 294.3 178 75.8
FvH4_4g27661 Fragaria vesca HOM05D006863 ORTHO05D009101 8.8e-78 293.9 178 78.1
FAN12G1275 Fragaria x ananassa HOM05D006863 ORTHO05D009101 1.1e-77 293.5 178 77.5
Sabra10G0096600 Salix brachista HOM05D006863 ORTHO05D009101 1.5e-77 293.1 178 78.7
GSVIVG01011920001 Vitis vinifera HOM05D006863 ORTHO05D009101 3.3e-77 292.0 183 76.0
QL01p043996 Quercus lobata HOM05D006863 ORTHO05D009101 4.3e-77 291.6 178 78.1
TWI75G0199 Tripterygium wilfordii HOM05D006863 ORTHO05D009101 4.3e-77 291.6 182 75.8
Dinv04484 Davidia involucrata HOM05D006863 ORTHO05D009101 9.7e-77 290.4 178 77.0
Potri.010G127200 Populus trichocarpa HOM05D006863 ORTHO05D009101 9.7e-77 290.4 178 77.5
FAN22G1855 Fragaria x ananassa HOM05D006863 ORTHO05D009101 1.7e-76 289.7 178 76.4
Lalb_Chr17g0342021 Lupinus albus HOM05D006863 ORTHO05D009101 2.2e-76 289.3 180 76.1
Cpa.g.sc1.191 Carica papaya HOM05D006863 ORTHO05D009101 2.8e-76 288.9 178 77.0
PGSC0003DMG401015876 Solanum tuberosum HOM05D006863 ORTHO05D009101 2.8e-76 288.9 182 73.6
HanXRQChr17g0552211 Helianthus annuus HOM05D006863 ORTHO05D009101 3.7e-76 288.5 182 73.1
CSS0023691 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 4.8e-76 288.1 178 74.7
RcHm_v2.0_Chr4g0435511 Rosa chinensis HOM05D006863 ORTHO05D009101 4.8e-76 288.1 178 76.4
Atru.chr11.1297 Acer truncatum HOM05D006863 ORTHO05D009101 8.2e-76 287.3 180 75.6
Lsat_1_v5_gn_3_59660 Lactuca sativa HOM05D006863 ORTHO05D009101 8.2e-76 287.3 178 75.8
Sopen04g002190 Solanum pennellii HOM05D006863 ORTHO05D009101 8.2e-76 287.3 182 73.1
ECA246G5009 Erigeron canadensis HOM05D006863 ORTHO05D009101 1.1e-75 287.0 178 74.7
MD13G1044100 Malus domestica HOM05D006863 ORTHO05D009101 3.1e-75 285.4 178 76.4
Solyc04g007110.4 Solanum lycopersicum HOM05D006863 ORTHO05D009101 4.1e-75 285.0 182 72.5
Gorai.013G081400 Gossypium raimondii HOM05D006863 ORTHO05D009101 6.9e-75 284.3 182 75.3
Manes.14G100000 Manihot esculenta HOM05D006863 ORTHO05D009101 6.9e-75 284.3 177 75.7
TPR.G38252 Trifolium pratense HOM05D006863 ORTHO05D009101 6.9e-75 284.3 180 73.9
Gohir.1Z049378 Gossypium hirsutum HOM05D006863 ORTHO05D009101 9.1e-75 283.9 180 76.1
Gohir.A13G053600 Gossypium hirsutum HOM05D006863 ORTHO05D009101 9.1e-75 283.9 180 76.1
Medtr5g054910 Medicago truncatula HOM05D006863 ORTHO05D009101 1.2e-74 283.5 182 73.1
CANSAT56G0117 Cannabis sativa HOM05D006863 ORTHO05D009101 1.5e-74 283.1 184 73.9
vmacro10546 Vaccinium macrocarpon HOM05D006863 ORTHO05D009101 2.0e-74 282.7 178 73.6
Gohir.D13G071100 Gossypium hirsutum HOM05D006863 ORTHO05D009101 2.6e-74 282.3 182 74.7
Glyma.08G260300 Glycine max HOM05D006863 ORTHO05D009101 5.9e-74 281.2 178 73.0
SalBow8G2780 Salvia bowleyana HOM05D006863 ORTHO05D009101 5.9e-74 281.2 178 73.6
Psat4g144720 Pisum sativum HOM05D006863 ORTHO05D009101 7.7e-74 280.8 180 72.8
Thecc.02G357800 Theobroma cacao HOM05D006863 ORTHO05D009101 7.7e-74 280.8 180 75.0
TAR371G0467 Trochodendron aralioides HOM05D006863 ORTHO05D009101 1.0e-73 280.4 180 74.4
Ciclev10031676m.g Citrus clementina HOM05D006863 ORTHO05D009101 2.2e-73 279.3 178 76.4
Nitab4.5_0000280g0240 Nicotiana tabacum HOM05D006863 ORTHO05D009101 2.2e-73 279.3 180 72.8
Peaxi162Scf00086g00919 Petunia axillaris HOM05D006863 ORTHO05D009101 2.9e-73 278.9 180 71.1
Phvul.002G082500 Phaseolus vulgaris HOM05D006863 ORTHO05D009101 5.0e-73 278.1 178 72.5
Cc11_g10350 Coffea canephora HOM05D006863 ORTHO05D009101 8.5e-73 277.3 177 74.6
Nitab4.5_0009260g0040 Nicotiana tabacum HOM05D006863 ORTHO05D009101 8.5e-73 277.3 180 72.2
Rhsim09G0110000 Rhododendron simsii HOM05D006863 ORTHO05D009101 8.5e-73 277.3 178 73.6
Duzib251G0889 Durio zibethinus HOM05D006863 ORTHO05D009101 2.5e-72 275.8 182 73.1
Lj2g0005111 Lotus japonicus HOM05D006863 ORTHO05D009101 4.2e-72 275.0 179 73.2
arahy.Tifrunner.gnm1.ann1.2EV214 Arachis hypogaea HOM05D006863 ORTHO05D009101 5.5e-72 274.6 178 71.3
arahy.Tifrunner.gnm1.ann1.S0U20I Arachis hypogaea HOM05D006863 ORTHO05D009101 7.2e-72 274.2 178 71.3
unitig_22.g6873 Utricularia gibba HOM05D001580 ORTHO05D009101 9.4e-72 273.9 180 68.9
Ah.03g137770 Amaranthus hybridus HOM05D006863 ORTHO05D005487 3.6e-71 271.9 180 69.4
Aqoxy3G00331 Aquilegia oxysepala HOM05D006863 ORTHO05D009101 3.6e-71 271.9 180 72.8
PGR119G0754 Punica granatum HOM05D006863 ORTHO05D009101 3.6e-71 271.9 179 73.7
PSO210G1549 Papaver somniferum HOM05D006863 ORTHO05D009101 4.7e-71 271.6 178 70.8
Sed0022103 Sechium edule HOM05D006863 ORTHO05D009101 4.7e-71 271.6 177 71.2
EL10Ac6g14444 Beta vulgaris HOM05D006863 ORTHO05D009101 6.1e-71 271.2 181 70.2
CsaV3_6G003370 Cucumis sativus L. HOM05D006863 ORTHO05D009101 1.8e-70 269.6 177 70.6
ClCG08G005160 Citrullus lanatus HOM05D006863 ORTHO05D009101 2.3e-70 269.2 177 71.2
MBI12_g32420_MAGBIO Magnolia biondii HOM05D006863 ORTHO05D009101 5.1e-70 268.1 182 70.9
PSO447G0382 Papaver somniferum HOM05D006863 ORTHO05D009101 2.6e-69 265.8 178 68.5
VMungo1215G1485 Vigna mungo HOM05D006863 ORTHO05D009101 5.7e-69 264.6 178 68.5
Migut.L01080 Erythranthe guttata HOM05D006863 ORTHO05D009101 7.4e-69 264.2 183 67.8
Os04g0462300 Oryza sativa ssp. japonica HOM05D006863 ORTHO05D009101 7.4e-69 264.2 182 66.5
AUR62002895 Chenopodium quinoa HOM05D006863 ORTHO05D009101 1.7e-68 263.1 180 69.4
Aa31LG2G6540 Aethionema arabicum HOM05D006863 ORTHO05D009101 2.2e-68 262.7 182 67.6
Sp2g15050 Schrenkiella parvula HOM05D006863 ORTHO05D009101 2.2e-68 262.7 184 67.9
Thhalv10004539m.g Eutrema salsugineum HOM05D006863 ORTHO05D009101 3.7e-68 261.9 184 66.3
THA.LOC104825705 Tarenaya hassleriana HOM05D006863 ORTHO05D009101 3.7e-68 261.9 178 70.2
AL5G14420 Arabidopsis lyrata HOM05D006863 ORTHO05D009101 4.8e-68 261.5 182 67.6
CARHR146720 Cardamine hirsuta HOM05D006863 ORTHO05D009101 1.4e-67 260.0 182 66.5
SGA_v2.0_scaffold32G13125 Striga asiatica HOM05D006863 ORTHO05D009101 2.4e-67 259.2 177 67.8
BcaC04g21415 Brassica carinata HOM05D006863 ORTHO05D005487 3.1e-67 258.8 178 68.0
A09p25060 Brassica napus HOM05D006863 ORTHO05D005487 3.1e-67 258.8 182 66.5
C09p32050 Brassica napus HOM05D006863 ORTHO05D009101 3.1e-67 258.8 178 68.0
BolC9t56057H Brassica oleracea HOM05D006863 ORTHO05D005487 3.1e-67 258.8 178 68.0
BraA09t38093Z Brassica rapa HOM05D006863 ORTHO05D005487 3.1e-67 258.8 182 66.5
AUR62035252 Chenopodium quinoa HOM05D006863 ORTHO05D009101 4.1e-67 258.5 180 68.3
Zm00001eb080610 Zea mays HOM05D006863 ORTHO05D009101 1.5e-66 256.5 179 66.5
Carub.0005s0363 Capsella rubella HOM05D006863 ORTHO05D009101 2.6e-66 255.8 182 65.9
arahy.Tifrunner.gnm1.ann1.PE9U7E Arachis hypogaea HOM05D006863 ORTHO05D009101 3.5e-66 255.4 212 59.4
AT3G25805 Arabidopsis thaliana HOM05D006863 ORTHO05D009101 5.9e-66 254.6 182 65.9
CiPaw.15G005400 Carya illinoinensis HOM05D006863 ORTHO05D009101 3.8e-65 251.9 156 76.9
Glyma.20G042600 Glycine max HOM05D006863 ORTHO05D009101 1.9e-64 249.6 177 67.2
Nn4g23802 Nelumbo nucifera HOM05D006863 ORTHO05D009101 1.2e-63 246.9 155 73.5
Actinidia14870 Actinidia chinensis HOM05D006863 ORTHO05D009101 1.6e-63 246.5 149 77.2
HPP92_023480 Vanilla planifolia HOM05D006863 ORTHO05D009101 2.1e-63 246.1 182 63.2
MELO3C011551.2 Cucumis melo HOM05D006863 ORTHO05D009101 2.6e-61 239.2 163 68.1
AUR62002896 Chenopodium quinoa HOM05D006863 ORTHO05D009101 3.3e-61 238.8 182 64.3
Haze_17458 Corylus avellana HOM05D006863 ORTHO05D009101 3.3e-61 238.8 182 65.4
MSTRG.824 Avicennia marina HOM05D006863 ORTHO05D009101 5.7e-61 238.0 178 63.5
SEGI_08911 Sequoiadendron giganteum HOM05D006863 ORTHO05D009101 1.3e-60 236.9 183 61.7
SEGI_20209 Sequoiadendron giganteum HOM05D006863 ORTHO05D009101 1.3e-60 236.9 183 61.7
BcaB07g30631 Brassica carinata HOM05D001825 ORTHO05D009101 3.1e-59 232.3 159 69.2
Peaxi162Scf00086g00918 Petunia axillaris HOM05D006863 ORTHO05D009101 5.3e-59 231.5 180 62.2
ATR0141G001 Amborella trichopoda HOM05D006863 ORTHO05D009101 6.1e-55 218.0 181 59.1
Mapoly0073s0050 Marchantia polymorpha HOM05D006863 ORTHO05D009101 4.0e-54 215.3 189 57.1
COL.COLO4_07899 Corchorus olitorius HOM05D006863 ORTHO05D009101 2.7e-50 202.6 180 60.0
CSS0005134 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 3.8e-49 198.7 137 67.2
CSS0013896 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 3.8e-49 198.7 137 67.2
Ca_27358_v3 Cicer arietinum L. HOM05D006863 ORTHO05D009101 1.2e-47 193.7 178 55.6
Pp3c1_42010 Physcomitrium patens HOM05D006863 ORTHO05D009101 3.6e-47 192.2 178 51.7
Gorai.012G052200 Gossypium raimondii HOM05D006863 ORTHO05D009101 3.1e-43 179.1 131 65.6
SMO111G0216 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 3.5e-42 175.6 180 47.8
Gohir.D04G047100 Gossypium hirsutum HOM05D006863 ORTHO05D009101 1.0e-41 174.1 131 64.1
Gohir.D11G195601 Gossypium hirsutum HOM05D006863 ORTHO05D009101 2.2e-36 156.4 131 60.3
AagrBONN_evm.TU.Sc2ySwM_117.2959 Anthoceros agrestis HOM05D006863 ORTHO05D009101 1.1e-32 144.1 144 50.7
MD16G1044900 Malus domestica HOM05D006863 ORTHO05D009101 1.6e-26 123.6 91 65.9
SMO358G0636 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 3.3e-24 115.9 132 45.5
Hund25085 Selenicereus undatus HOM05D006863 ORTHO05D009101 7.3e-16 88.2 45 86.7
PRCOL_00006784 Prasinoderma coloniale HOM05D006863 ORTHO05D002945 8.1e-15 84.7 179 33.0
MCO04G047 Micromonas commoda HOM05D006863 ORTHO05D002945 1.1e-11 74.3 185 28.6
Cre02.g088500 Chlamydomonas reinhardtii HOM05D002745 ORTHO05D002945 1.4e-11 73.9 191 29.3


User provided reference genes

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