Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0006560 Simmondsia chinensis HOM05D006863 ORTHO05D009101 5.7e-86 320.9 160 100.0
Medtr5g054910 Medicago truncatula HOM05D006863 ORTHO05D009101 2.6e-22 109.4 144 49.3
TPR.G38252 Trifolium pratense HOM05D006863 ORTHO05D009101 2.6e-22 109.4 138 50.0
EL10Ac6g14444 Beta vulgaris HOM05D006863 ORTHO05D009101 9.9e-22 107.5 78 67.9
AUR62035252 Chenopodium quinoa HOM05D006863 ORTHO05D009101 3.8e-21 105.5 90 61.1
Potri.010G127200 Populus trichocarpa HOM05D006863 ORTHO05D009101 3.8e-21 105.5 158 44.3
Hund25085 Selenicereus undatus HOM05D006863 ORTHO05D009101 3.8e-21 105.5 81 63.0
CSS0023691 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 4.9e-21 105.1 87 60.9
VMungo1215G1485 Vigna mungo HOM05D006863 ORTHO05D009101 1.1e-20 104.0 63 79.4
Lj2g0005111 Lotus japonicus HOM05D006863 ORTHO05D009101 1.4e-20 103.6 146 45.9
Phvul.002G082500 Phaseolus vulgaris HOM05D006863 ORTHO05D009101 1.9e-20 103.2 63 79.4
Sabra10G0096600 Salix brachista HOM05D006863 ORTHO05D009101 1.9e-20 103.2 86 60.5
Duzib251G0889 Durio zibethinus HOM05D006863 ORTHO05D009101 4.2e-20 102.1 161 42.9
Thhalv10004539m.g Eutrema salsugineum HOM05D006863 ORTHO05D009101 4.2e-20 102.1 146 41.1
Glyma.08G260300 Glycine max HOM05D006863 ORTHO05D009101 9.3e-20 100.9 75 62.7
Dinv04484 Davidia involucrata HOM05D006863 ORTHO05D009101 1.2e-19 100.5 162 40.7
Ah.03g137770 Amaranthus hybridus HOM05D006863 ORTHO05D005487 1.6e-19 100.1 156 42.3
MSTRG.824 Avicennia marina HOM05D006863 ORTHO05D009101 1.6e-19 100.1 57 77.2
Lsat_1_v5_gn_3_59660 Lactuca sativa HOM05D006863 ORTHO05D009101 1.6e-19 100.1 86 64.0
Peaxi162Scf00086g00918 Petunia axillaris HOM05D006863 ORTHO05D009101 1.6e-19 100.1 63 73.0
Prupe.1G308400 Prunus persica HOM05D006863 ORTHO05D009101 1.6e-19 100.1 148 43.9
RcHm_v2.0_Chr4g0435511 Rosa chinensis HOM05D006863 ORTHO05D009101 1.6e-19 100.1 77 62.3
MD13G1044100 Malus domestica HOM05D006863 ORTHO05D009101 2.1e-19 99.8 159 40.3
AT3G25805 Arabidopsis thaliana HOM05D006863 ORTHO05D009101 3.5e-19 99.0 74 62.2
Carub.0005s0363 Capsella rubella HOM05D006863 ORTHO05D009101 3.5e-19 99.0 85 60.0
Rhsim09G0110000 Rhododendron simsii HOM05D006863 ORTHO05D009101 3.5e-19 99.0 84 61.9
ECA246G5009 Erigeron canadensis HOM05D006863 ORTHO05D009101 4.6e-19 98.6 57 77.2
FAN12G1275 Fragaria x ananassa HOM05D006863 ORTHO05D009101 4.6e-19 98.6 77 61.0
HanXRQChr17g0552211 Helianthus annuus HOM05D006863 ORTHO05D009101 4.6e-19 98.6 147 43.5
AL5G14420 Arabidopsis lyrata HOM05D006863 ORTHO05D009101 6.0e-19 98.2 87 57.5
Lalb_Chr17g0342021 Lupinus albus HOM05D006863 ORTHO05D009101 6.0e-19 98.2 56 78.6
arahy.Tifrunner.gnm1.ann1.S0U20I Arachis hypogaea HOM05D006863 ORTHO05D009101 7.9e-19 97.8 56 78.6
CANSAT56G0117 Cannabis sativa HOM05D006863 ORTHO05D009101 7.9e-19 97.8 67 70.1
Gohir.1Z049378 Gossypium hirsutum HOM05D006863 ORTHO05D009101 7.9e-19 97.8 96 55.2
Gohir.A13G053600 Gossypium hirsutum HOM05D006863 ORTHO05D009101 7.9e-19 97.8 96 55.2
Lj3C1017T9 Lonicera japonica HOM05D006863 ORTHO05D009101 7.9e-19 97.8 158 43.7
Cc11_g10350 Coffea canephora HOM05D006863 ORTHO05D009101 1.0e-18 97.4 160 41.9
Peaxi162Scf00086g00919 Petunia axillaris HOM05D006863 ORTHO05D009101 1.0e-18 97.4 63 73.0
SalBow8G2780 Salvia bowleyana HOM05D006863 ORTHO05D009101 1.0e-18 97.4 56 78.6
Solyc04g007110.4 Solanum lycopersicum HOM05D006863 ORTHO05D009101 1.0e-18 97.4 63 69.8
Actinidia14870 Actinidia chinensis HOM05D006863 ORTHO05D009101 1.3e-18 97.1 84 60.7
BcaB07g30631 Brassica carinata HOM05D001825 ORTHO05D009101 1.3e-18 97.1 73 63.0
Nitab4.5_0009260g0040 Nicotiana tabacum HOM05D006863 ORTHO05D009101 1.3e-18 97.1 63 69.8
TAR371G0467 Trochodendron aralioides HOM05D006863 ORTHO05D009101 1.3e-18 97.1 85 58.8
Sopen04g002190 Solanum pennellii HOM05D006863 ORTHO05D009101 1.8e-18 96.7 63 69.8
PGSC0003DMG401015876 Solanum tuberosum HOM05D006863 ORTHO05D009101 1.8e-18 96.7 63 69.8
Gohir.D13G071100 Gossypium hirsutum HOM05D006863 ORTHO05D009101 2.3e-18 96.3 85 57.6
Gorai.013G081400 Gossypium raimondii HOM05D006863 ORTHO05D009101 2.3e-18 96.3 85 57.6
Manes.14G100000 Manihot esculenta HOM05D006863 ORTHO05D009101 2.3e-18 96.3 56 76.8
Nitab4.5_0000280g0240 Nicotiana tabacum HOM05D006863 ORTHO05D009101 2.3e-18 96.3 63 69.8
QL01p043996 Quercus lobata HOM05D006863 ORTHO05D009101 2.3e-18 96.3 57 80.7
Aqoxy3G00331 Aquilegia oxysepala HOM05D006863 ORTHO05D009101 3.0e-18 95.9 63 73.0
PGR119G0754 Punica granatum HOM05D006863 ORTHO05D009101 3.0e-18 95.9 153 41.8
Aa31LG2G6540 Aethionema arabicum HOM05D006863 ORTHO05D009101 3.9e-18 95.5 73 63.0
Migut.L01080 Erythranthe guttata HOM05D006863 ORTHO05D009101 3.9e-18 95.5 63 66.7
vmacro10546 Vaccinium macrocarpon HOM05D006863 ORTHO05D009101 3.9e-18 95.5 152 44.1
Sp2g15050 Schrenkiella parvula HOM05D006863 ORTHO05D009101 5.1e-18 95.1 73 60.3
THA.LOC104825705 Tarenaya hassleriana HOM05D006863 ORTHO05D009101 8.7e-18 94.4 75 61.3
arahy.Tifrunner.gnm1.ann1.2EV214 Arachis hypogaea HOM05D006863 ORTHO05D009101 1.1e-17 94.0 147 44.9
arahy.Tifrunner.gnm1.ann1.PE9U7E Arachis hypogaea HOM05D006863 ORTHO05D009101 1.1e-17 94.0 56 75.0
C09p32050 Brassica napus HOM05D006863 ORTHO05D009101 1.1e-17 94.0 140 43.6
Eucgr.G02336 Eucalyptus grandis HOM05D006863 ORTHO05D009101 1.5e-17 93.6 78 60.3
Nn4g23802 Nelumbo nucifera HOM05D006863 ORTHO05D009101 1.5e-17 93.6 85 57.6
Oeu042053.1 Olea europaea HOM05D006863 ORTHO05D009101 1.5e-17 93.6 63 66.7
A09p25060 Brassica napus HOM05D006863 ORTHO05D005487 1.9e-17 93.2 73 60.3
Cpa.g.sc1.191 Carica papaya HOM05D006863 ORTHO05D009101 1.9e-17 93.2 76 60.5
CiPaw.15G005400 Carya illinoinensis HOM05D006863 ORTHO05D009101 1.9e-17 93.2 57 75.4
BcaC04g21415 Brassica carinata HOM05D006863 ORTHO05D005487 2.5e-17 92.8 141 43.3
BolC9t56057H Brassica oleracea HOM05D006863 ORTHO05D005487 2.5e-17 92.8 141 43.3
Ciclev10031676m.g Citrus clementina HOM05D006863 ORTHO05D009101 2.5e-17 92.8 88 55.7
GSVIVG01011920001 Vitis vinifera HOM05D006863 ORTHO05D009101 2.5e-17 92.8 107 48.6
Thecc.02G357800 Theobroma cacao HOM05D006863 ORTHO05D009101 3.3e-17 92.4 161 40.4
BraA09t38093Z Brassica rapa HOM05D006863 ORTHO05D005487 4.3e-17 92.0 73 58.9
Atru.chr11.1297 Acer truncatum HOM05D006863 ORTHO05D009101 7.4e-17 91.3 57 73.7
Sed0022103 Sechium edule HOM05D006863 ORTHO05D009101 1.6e-16 90.1 69 62.3
CsaV3_6G003370 Cucumis sativus L. HOM05D006863 ORTHO05D009101 2.8e-16 89.4 57 70.2
PSO447G0382 Papaver somniferum HOM05D006863 ORTHO05D009101 2.8e-16 89.4 50 78.0
ClCG08G005160 Citrullus lanatus HOM05D006863 ORTHO05D009101 4.8e-16 88.6 81 59.3
MBI12_g32420_MAGBIO Magnolia biondii HOM05D006863 ORTHO05D009101 8.2e-16 87.8 85 49.4
PSO210G1549 Papaver somniferum HOM05D006863 ORTHO05D009101 1.1e-15 87.4 50 78.0
HPP92_023480 Vanilla planifolia HOM05D006863 ORTHO05D009101 2.4e-15 86.3 101 47.5
Mapoly0073s0050 Marchantia polymorpha HOM05D006863 ORTHO05D009101 9.0e-15 84.3 71 50.7
ATR0141G001 Amborella trichopoda HOM05D006863 ORTHO05D009101 1.2e-14 84.0 98 42.9
CDE11G0826 Ceratophyllum demersum HOM05D006863 ORTHO05D009101 4.5e-14 82.0 50 66.0
Os04g0462300 Oryza sativa ssp. japonica HOM05D006863 ORTHO05D009101 1.3e-13 80.5 58 62.1
AagrBONN_evm.TU.Sc2ySwM_117.2959 Anthoceros agrestis HOM05D006863 ORTHO05D009101 2.9e-13 79.3 58 55.2
SMO111G0216 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 4.9e-13 78.6 51 62.7
SMO358G0636 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 4.9e-13 78.6 51 62.7
Pp3c1_42010 Physcomitrium patens HOM05D006863 ORTHO05D009101 6.5e-13 78.2 128 40.6
SGA_v2.0_scaffold32G13125 Striga asiatica HOM05D006863 ORTHO05D009101 1.5e-09 67.0 115 39.1
Haze_17458 Corylus avellana HOM05D006863 ORTHO05D009101 2.0e-06 56.6 31 83.9
FvH4_4g27661 Fragaria vesca HOM05D006863 ORTHO05D009101 7.7e-06 54.7 31 74.2


User provided reference genes

Program Settings