Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 1.4e-187 659.4 339 100.0
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 1.7e-140 503.1 303 84.5
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 5.2e-137 491.5 356 77.0
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 8.9e-137 490.7 350 78.0
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 3.4e-136 488.8 313 81.8
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 5.7e-136 488.0 353 75.9
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 9.8e-136 487.3 298 83.2
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 3.7e-135 485.3 347 77.2
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 2.7e-133 479.2 349 73.9
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 7.8e-133 477.6 302 82.5
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 1.0e-132 477.2 359 74.7
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 1.7e-132 476.5 352 73.9
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 2.9e-132 475.7 345 75.7
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 2.9e-132 475.7 302 82.1
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 5.0e-132 474.9 354 74.0
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 5.0e-132 474.9 351 74.1
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 6.6e-132 474.6 359 74.1
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 6.6e-132 474.6 354 74.9
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 8.6e-132 474.2 321 79.4
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 1.1e-131 473.8 305 82.6
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 1.5e-131 473.4 348 73.9
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 1.9e-131 473.0 305 82.6
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 3.3e-131 472.2 315 81.3
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 4.3e-131 471.9 318 79.2
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 5.6e-131 471.5 345 74.2
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 7.3e-131 471.1 311 79.4
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 7.3e-131 471.1 353 72.5
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 9.5e-131 470.7 349 73.4
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 1.6e-130 469.9 295 83.7
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 1.6e-130 469.9 305 80.3
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 1.6e-130 469.9 297 82.8
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 2.8e-130 469.2 346 74.0
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 3.6e-130 468.8 349 72.8
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 3.6e-130 468.8 341 72.4
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 3.6e-130 468.8 316 78.2
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 6.1e-130 468.0 312 81.1
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 6.1e-130 468.0 358 72.1
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 6.1e-130 468.0 310 80.3
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 8.0e-130 467.6 349 72.8
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 8.0e-130 467.6 349 73.1
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 1.4e-129 466.8 303 81.5
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 2.3e-129 466.1 357 73.7
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 3.0e-129 465.7 308 80.2
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 5.2e-129 464.9 303 81.2
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 6.8e-129 464.5 308 79.5
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 6.8e-129 464.5 318 76.1
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 8.9e-129 464.2 311 79.1
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 2.0e-128 463.0 305 80.3
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 2.0e-128 463.0 316 80.1
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 2.6e-128 462.6 352 73.3
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 3.4e-128 462.2 303 78.9
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 4.4e-128 461.8 289 83.0
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 7.5e-128 461.1 346 71.7
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 9.8e-128 460.7 323 77.7
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 4.9e-127 458.4 346 70.2
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 8.3e-127 457.6 293 79.9
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.1e-126 457.2 344 73.8
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 1.1e-126 457.2 329 74.5
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 1.1e-126 457.2 323 76.2
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 1.1e-126 457.2 277 86.3
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 1.4e-126 456.8 322 76.7
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 1.9e-126 456.4 305 77.4
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 1.9e-126 456.4 305 77.4
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 1.9e-126 456.4 308 78.6
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 2.4e-126 456.1 316 75.3
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 3.2e-126 455.7 309 77.0
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 4.1e-126 455.3 342 73.7
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 4.1e-126 455.3 313 78.9
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 5.4e-126 454.9 303 79.2
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 9.2e-126 454.1 353 71.7
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 9.2e-126 454.1 336 71.1
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 9.2e-126 454.1 310 78.1
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 1.2e-125 453.8 303 77.9
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 1.2e-125 453.8 312 77.6
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 1.2e-125 453.8 447 61.5
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 1.2e-125 453.8 348 71.0
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 1.6e-125 453.4 312 77.9
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 1.6e-125 453.4 314 76.4
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 2.7e-125 452.6 353 71.7
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 2.7e-125 452.6 293 81.2
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 4.6e-125 451.8 312 76.9
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 6.0e-125 451.4 301 78.7
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 6.0e-125 451.4 383 65.5
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 7.8e-125 451.1 307 78.2
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 7.8e-125 451.1 312 77.6
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 7.8e-125 451.1 312 76.9
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 7.8e-125 451.1 293 80.9
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 1.3e-124 450.3 326 72.7
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 1.7e-124 449.9 307 78.2
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 1.7e-124 449.9 260 88.5
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 2.3e-124 449.5 315 77.5
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 2.3e-124 449.5 315 77.5
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 2.3e-124 449.5 315 77.5
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 3.0e-124 449.1 313 77.6
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 3.0e-124 449.1 313 77.6
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.0e-124 449.1 350 72.6
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 3.9e-124 448.7 312 77.6
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 3.9e-124 448.7 355 71.0
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 5.0e-124 448.4 282 82.3
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 6.6e-124 448.0 312 76.6
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 6.6e-124 448.0 278 83.8
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 8.6e-124 447.6 282 82.3
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 1.5e-123 446.8 276 83.7
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 1.9e-123 446.4 282 82.3
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 2.5e-123 446.0 329 70.8
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 3.3e-123 445.7 259 86.1
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 3.3e-123 445.7 259 86.1
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 4.3e-123 445.3 304 76.6
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 9.5e-123 444.1 353 71.7
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 1.2e-122 443.7 278 82.4
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 2.8e-122 442.6 304 76.0
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 6.8e-121 438.0 301 77.7
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 6.8e-121 438.0 288 80.2
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 3.4e-120 435.6 317 73.2
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 3.4e-120 435.6 286 80.1
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 4.4e-120 435.3 332 70.2
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 4.9e-119 431.8 352 69.0
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 3.2e-118 429.1 305 76.7
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.7e-116 423.3 274 79.2
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 3.9e-116 422.2 244 89.3
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 1.5e-115 420.2 298 73.8
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.6e-114 416.8 304 74.3
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 6.8e-113 411.4 331 69.2
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 1.2e-112 410.6 281 75.1
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 2.4e-110 402.9 336 65.5
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 4.1e-110 402.1 316 71.5
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 1.6e-109 400.2 272 76.8
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 2.7e-109 399.4 301 70.1
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 4.6e-109 398.7 225 89.8
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 5.1e-108 395.2 293 71.0
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 5.1e-108 395.2 260 76.9
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 8.6e-108 394.4 250 78.8
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 1.2e-106 390.6 247 79.4
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 6.2e-106 388.3 296 69.9
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 2.4e-105 386.3 271 73.4
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 3.6e-98 362.5 252 69.4
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 6.4e-95 351.7 282 69.1
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 9.3e-94 347.8 216 82.9
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 3.9e-92 342.4 253 70.0
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 6.9e-89 331.6 271 63.1
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 6.7e-84 315.1 311 59.8
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 4.9e-71 272.3 228 64.9
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 2.3e-60 236.9 154 79.9
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 1.1e-59 234.6 158 77.8
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 1.8e-57 227.3 187 66.8
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 5.3e-57 225.7 148 78.4
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 4.5e-48 196.1 108 93.5
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 5.2e-36 156.0 102 79.4
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 8.8e-36 155.2 99 80.8
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 6.3e-34 149.1 132 62.9
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 9.1e-33 145.2 112 66.1
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 1.8e-25 120.9 102 68.6
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 9.5e-22 108.6 61 90.2
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 1.0e-20 105.1 64 87.5


User provided reference genes

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