Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0005780 Simmondsia chinensis HOM05D005467 ORTHO05D006523 4.5e-183 644.4 320 100.0
Dinv05879 Davidia involucrata HOM05D005467 ORTHO05D006523 4.8e-124 448.4 277 79.4
CSS0047900 Camellia sinensis var. sinensis HOM05D005467 ORTHO05D006523 9.0e-123 444.1 267 80.5
Ciclev10015390m.g Citrus clementina HOM05D005467 ORTHO05D006523 3.4e-122 442.2 268 79.9
QL01p002615 Quercus lobata HOM05D005467 ORTHO05D006523 5.8e-122 441.4 277 78.0
Potri.010G116200 Populus trichocarpa HOM05D005467 ORTHO05D006523 7.6e-122 441.0 268 80.2
Nn3g18021 Nelumbo nucifera HOM05D005467 ORTHO05D006523 8.4e-121 437.6 277 76.2
Rhsim09G0101300 Rhododendron simsii HOM05D005467 ORTHO05D006523 1.1e-120 437.2 304 71.7
GSVIVG01011792001 Vitis vinifera HOM05D005467 ORTHO05D006523 1.9e-120 436.4 269 78.8
Hma1.2p1_0114F.1_g055340 Hydrangea macrophylla HOM05D005467 ORTHO05D006523 4.2e-120 435.3 281 77.2
Cfa008565 Carpinus fangiana HOM05D005467 ORTHO05D006523 7.1e-120 434.5 268 79.1
PGR119G0286 Punica granatum HOM05D005467 ORTHO05D006523 7.1e-120 434.5 267 79.4
FAN12G3855 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.6e-119 433.3 271 77.1
Actinidia14942 Actinidia chinensis HOM05D005467 ORTHO05D006523 2.1e-119 433.0 278 76.6
HanXRQChr15g0477671 Helianthus annuus HOM05D005467 ORTHO05D006523 4.6e-119 431.8 267 78.3
FvH4_4g26200 Fragaria vesca HOM05D005467 ORTHO05D006523 7.9e-119 431.0 271 76.8
Thecc.02G211500 Theobroma cacao HOM05D005467 ORTHO05D006523 7.9e-119 431.0 267 78.3
CiPaw.05G246600 Carya illinoinensis HOM05D005467 ORTHO05D006523 1.8e-118 429.9 268 78.4
Glyma.10G266400 Glycine max HOM05D005467 ORTHO05D006523 1.8e-118 429.9 268 76.9
Sabra10G0087600 Salix brachista HOM05D005467 ORTHO05D006523 1.8e-118 429.9 297 73.4
Gorai.012G123600 Gossypium raimondii HOM05D005467 ORTHO05D006523 2.3e-118 429.5 271 76.8
RcHm_v2.0_Chr4g0433781 Rosa chinensis HOM05D005467 ORTHO05D006523 3.0e-118 429.1 267 78.3
Glyma.20G124100 Glycine max HOM05D005467 ORTHO05D006523 3.9e-118 428.7 268 77.2
Lj5g0001822 Lotus japonicus HOM05D005467 ORTHO05D006523 3.9e-118 428.7 277 74.0
TAR629G1677 Trochodendron aralioides HOM05D005467 ORTHO05D006523 3.9e-118 428.7 267 77.2
PSO063G5439 Papaver somniferum HOM05D005467 ORTHO05D006523 5.1e-118 428.3 277 74.7
Sabra10G0086000 Salix brachista HOM05D005467 ORTHO05D006523 6.7e-118 427.9 301 72.4
Migut.L00653 Erythranthe guttata HOM05D005467 ORTHO05D006523 8.7e-118 427.6 277 75.1
FAN12G1869 Fragaria x ananassa HOM05D005467 ORTHO05D006523 8.7e-118 427.6 271 76.4
Gohir.A04G099200 Gossypium hirsutum HOM05D005467 ORTHO05D006523 8.7e-118 427.6 271 76.8
arahy.Tifrunner.gnm1.ann1.U1J3BU Arachis hypogaea HOM05D005467 ORTHO05D006523 1.5e-117 426.8 265 76.6
Migut.L00826 Erythranthe guttata HOM05D005467 ORTHO05D006523 1.9e-117 426.4 277 75.1
MD16G1031500 Malus domestica HOM05D005467 ORTHO05D006523 4.3e-117 425.2 268 76.9
Phvul.007G035400 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 5.6e-117 424.9 268 76.5
Gohir.D04G138632 Gossypium hirsutum HOM05D005467 ORTHO05D006523 7.4e-117 424.5 271 76.0
PSO782G0553 Papaver somniferum HOM05D005467 ORTHO05D006523 9.6e-117 424.1 281 74.0
VMungo0720G1946 Vigna mungo HOM05D005467 ORTHO05D006523 9.6e-117 424.1 268 75.7
FAN07G0694 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.6e-116 423.3 271 76.4
TWI31G0476 Tripterygium wilfordii HOM05D005467 ORTHO05D006523 2.8e-116 422.5 273 74.4
MELO3C012295.2 Cucumis melo HOM05D005467 ORTHO05D006523 1.1e-115 420.6 271 76.0
Lalb_Chr21g0308561 Lupinus albus HOM05D005467 ORTHO05D006523 1.1e-115 420.6 268 74.6
ECA246G2902 Erigeron canadensis HOM05D005467 ORTHO05D006523 1.8e-115 419.9 266 76.3
Manes.06G062500 Manihot esculenta HOM05D005467 ORTHO05D006523 4.0e-115 418.7 276 73.6
Atru.chr11.358 Acer truncatum HOM05D005467 ORTHO05D006523 6.9e-115 417.9 268 76.1
CsaV3_5G034840 Cucumis sativus L. HOM05D005467 ORTHO05D006523 6.9e-115 417.9 269 75.8
MSTRG.879 Avicennia marina HOM05D005467 ORTHO05D006523 9.0e-115 417.5 276 73.9
Sed0008724 Sechium edule HOM05D005467 ORTHO05D006523 2.0e-114 416.4 267 75.7
Eucgr.G02222 Eucalyptus grandis HOM05D005467 ORTHO05D006523 4.5e-114 415.2 271 74.2
arahy.Tifrunner.gnm1.ann1.F0PHAM Arachis hypogaea HOM05D005467 ORTHO05D006523 5.8e-114 414.8 288 70.8
Nitab4.5_0000350g0200 Nicotiana tabacum HOM05D005467 ORTHO05D006523 5.8e-114 414.8 275 73.1
Aqoxy3G00153 Aquilegia oxysepala HOM05D005467 ORTHO05D006523 7.6e-114 414.5 273 75.1
Nitab4.5_0004524g0030 Nicotiana tabacum HOM05D005467 ORTHO05D006523 4.2e-112 408.7 275 72.0
CANSAT01G3134 Cannabis sativa HOM05D005467 ORTHO05D006523 3.5e-111 405.6 267 74.9
CAN.G1489.4 Capsicum annuum HOM05D005467 ORTHO05D006523 3.5e-111 405.6 268 73.5
TPR.G4835 Trifolium pratense HOM05D005467 ORTHO05D006523 3.5e-111 405.6 268 72.4
Peaxi162Scf00205g00928 Petunia axillaris HOM05D005467 ORTHO05D006523 6.0e-111 404.8 271 72.3
Medtr1g108650 Medicago truncatula HOM05D005467 ORTHO05D006523 5.1e-110 401.7 268 71.6
AUR62014129 Chenopodium quinoa HOM05D005467 ORTHO05D006523 2.5e-109 399.4 293 68.6
Psat6g222960 Pisum sativum HOM05D005467 ORTHO05D006523 6.2e-108 394.8 265 71.7
DCAR_007277 Daucus carota HOM05D005467 ORTHO05D006523 8.1e-108 394.4 268 72.4
Hund24998 Selenicereus undatus HOM05D005467 ORTHO05D006523 8.1e-108 394.4 282 71.6
Lj6C750G3 Lonicera japonica HOM05D005467 ORTHO05D006523 2.4e-107 392.9 271 72.0
Ah.02g128100 Amaranthus hybridus HOM05D005467 ORTHO05D006523 5.8e-106 388.3 286 66.8
MBI10_g46301_MAGBIO Magnolia biondii HOM05D005467 ORTHO05D006523 1.7e-105 386.7 218 86.2
Sopen05g004250 Solanum pennellii HOM05D005467 ORTHO05D006523 3.8e-105 385.6 268 70.5
ClCG05G022280 Citrullus lanatus HOM05D005467 ORTHO05D006523 1.1e-104 384.0 345 60.0
Solyc05g008420.4 Solanum lycopersicum HOM05D005467 ORTHO05D006523 4.2e-104 382.1 268 70.1
Ca_11108_v3 Cicer arietinum L. HOM05D005467 ORTHO05D006523 1.6e-103 380.2 267 68.5
Os01g0506200 Oryza sativa ssp. japonica HOM05D005467 ORTHO05D006523 1.6e-103 380.2 265 69.1
TAR622G1271 Trochodendron aralioides HOM05D005467 ORTHO05D006523 1.6e-103 380.2 219 84.0
vmacro10622 Vaccinium macrocarpon HOM05D005467 ORTHO05D006523 8.7e-102 374.4 220 80.5
Prupe.1G321400 Prunus persica HOM05D005467 ORTHO05D006523 8.2e-100 367.9 219 81.3
Duzib248G1088 Durio zibethinus HOM05D005467 ORTHO05D006523 5.0e-97 358.6 271 68.6
Oeu064202.3 Olea europaea HOM05D005467 ORTHO05D006523 2.3e-94 349.7 274 65.3
SGA_v2.0_scaffold50G18532 Striga asiatica HOM05D005467 ORTHO05D006523 8.7e-94 347.8 277 63.9
Cpa.g.sc65.104 Carica papaya HOM05D005467 ORTHO05D006523 2.4e-91 339.7 269 65.8
CDE06G2222 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 6.5e-89 331.6 222 71.6
SMO172G0164 Selaginella moellendorffii HOM05D005467 ORTHO05D006523 1.1e-85 320.9 256 61.3
AUR62039552 Chenopodium quinoa HOM05D005467 ORTHO05D006523 2.8e-84 316.2 293 58.4
ATR0041G011 Amborella trichopoda HOM05D005467 ORTHO05D006523 4.8e-84 315.5 268 58.2
SEGI_12457 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 3.4e-82 309.3 224 65.6
Dinv04888 Davidia involucrata HOM05D005467 ORTHO05D006523 2.5e-80 303.1 194 75.8
AagrBONN_evm.TU.Sc2ySwM_344.4352 Anthoceros agrestis HOM05D005467 ORTHO05D006523 2.6e-77 293.1 262 56.1
unitig_21.g20024 Utricularia gibba HOM05D000903 ORTHO05D000731 4.1e-75 285.8 268 56.0
Pp3c22_2590 Physcomitrium patens HOM05D005467 ORTHO05D006523 6.5e-73 278.5 246 55.7
Nitab4.5_0000293g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 7.2e-72 275.0 279 48.7
Nitab4.5_0000350g0270 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.6e-63 247.3 281 46.3
CBR_g17592 Chara braunii HOM05D005467 ORTHO05D006523 2.3e-57 226.9 266 47.7
Cc11_g09120 Coffea canephora HOM05D005467 ORTHO05D006523 4.2e-56 222.6 151 72.2
Haze_11049 Corylus avellana HOM05D005467 ORTHO05D006523 4.2e-56 222.6 159 70.4
Cc11_g09130 Coffea canephora HOM05D005467 ORTHO05D006523 9.5e-56 221.5 133 81.2
Gohir.D04G138566 Gossypium hirsutum HOM05D005467 ORTHO05D006523 3.6e-55 219.5 137 77.4
Lsat_1_v5_gn_3_54101 Lactuca sativa HOM05D005467 ORTHO05D006523 6.1e-55 218.8 134 80.6
Sopen02g012020 Solanum pennellii HOM05D005467 ORTHO05D006523 3.4e-53 213.0 274 40.1
Peaxi162Scf00159g00823 Petunia axillaris HOM05D005467 ORTHO05D006523 1.7e-52 210.7 300 39.0
PGSC0003DMG400029189 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.0e-50 203.8 271 38.4
PGSC0003DMG400017873 Solanum tuberosum HOM05D005467 ORTHO05D006523 5.0e-49 199.1 269 38.3
Haze_11050 Corylus avellana HOM05D005467 ORTHO05D006523 1.2e-47 194.5 179 58.7
Sopen02g012000 Solanum pennellii HOM05D005467 ORTHO05D006523 2.8e-47 193.4 267 38.2
Peaxi162Scf00159g00824 Petunia axillaris HOM05D005467 ORTHO05D006523 1.4e-46 191.0 249 45.4
HPP92_008650 Vanilla planifolia HOM05D005467 ORTHO05D006523 4.0e-46 189.5 137 68.6
Sopen02g012010 Solanum pennellii HOM05D005467 ORTHO05D006523 8.9e-46 188.3 273 38.1
Zm00001eb341680 Zea mays HOM05D005467 ORTHO05D006523 3.4e-45 186.4 134 66.4
Lsat_1_v5_gn_3_86380 Lactuca sativa HOM05D005467 ORTHO05D006523 7.5e-45 185.3 117 79.5
PRCOL_00002109 Prasinoderma coloniale HOM05D005467 ORTHO05D006523 8.6e-41 171.8 245 40.4
Sed0021963 Sechium edule HOM05D005467 ORTHO05D006523 8.6e-41 171.8 263 40.7
MCO12G173 Micromonas commoda HOM05D005467 ORTHO05D006523 1.1e-40 171.4 294 39.8
Lsat_1_v5_gn_3_107041 Lactuca sativa HOM05D005467 ORTHO05D006523 1.9e-40 170.6 216 49.1
Solyc02g038680.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.8e-38 164.1 261 37.5
Solyc02g038660.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 2.0e-34 150.6 274 33.9
Lsat_1_v5_gn_4_96160 Lactuca sativa HOM05D005467 ORTHO05D006523 2.7e-34 150.2 112 69.6
Lsat_1_v5_gn_7_58700 Lactuca sativa HOM05D005467 ORTHO05D006523 3.5e-34 149.8 112 69.6
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 5.6e-32 142.5 85 81.2
Solyc02g038650.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 4.0e-30 136.3 200 38.5
Nitab4.5_0019054g0020 Nicotiana tabacum HOM05D005467 ORTHO05D006523 4.9e-28 129.4 162 43.8
Solyc02g038670.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 5.4e-27 125.9 270 30.7
Nitab4.5_0002820g0070 Nicotiana tabacum HOM05D005467 ORTHO05D006523 8.6e-25 118.6 145 43.4
Lsat_1_v5_gn_6_22900 Lactuca sativa HOM05D005467 ORTHO05D006523 6.8e-22 109.0 76 72.4
Peaxi162Scf00205g00812 Petunia axillaris HOM05D005467 ORTHO05D006523 1.4e-19 101.3 268 28.7
Phvul.008G137000 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 1.9e-19 100.9 55 80.0
RcHm_v2.0_Chr3g0493761 Rosa chinensis HOM05D005467 ORTHO05D006523 5.4e-19 99.4 66 72.7
PGSC0003DMG400029188 Solanum tuberosum HOM05D005467 ORTHO05D006523 6.6e-17 92.4 121 39.7
PGSC0003DMG400038827 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.9e-16 90.9 104 37.5
Nitab4.5_0000688g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 6.9e-14 82.4 101 40.6
Solyc02g038700.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.1e-11 75.1 94 37.2
FAN17G2566 Fragaria x ananassa HOM05D005467 ORTHO05D006523 7.8e-10 68.9 46 73.9
SEGI_39271 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 1.5e-08 64.7 43 72.1
Sopen02g012080 Solanum pennellii HOM05D005467 ORTHO05D006523 9.6e-08 62.0 208 27.9
Cre12.g549600 Chlamydomonas reinhardtii HOM05D005467 ORTHO05D006523 2.8e-07 60.5 144 29.9
CDE07G1559 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 1.1e-06 58.5 50 50.0
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 1.8e-06 57.8 41 58.5
MBI10_g06898_MAGBIO Magnolia biondii HOM05D002523 ORTHO05D006523 2.4e-06 57.4 36 77.8
MD05G1282800 Malus domestica HOM05D005467 ORTHO05D006523 4.0e-06 56.6 171 26.3
MBI05_g15354_MAGBIO Magnolia biondii HOM05D002523 ORTHO05D022880 9.0e-06 55.5 37 73.0


User provided reference genes

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