Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 3.8e-128 461.5 226 100.0
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 5.8e-108 394.4 226 84.5
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 1.9e-106 389.4 226 83.6
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 2.3e-104 382.5 261 75.1
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 9.5e-103 377.1 226 82.7
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 4.7e-102 374.8 226 81.0
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 6.2e-102 374.4 226 82.3
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 2.3e-101 372.5 226 80.1
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 2.3e-101 372.5 226 80.1
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 3.1e-101 372.1 226 81.4
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 3.1e-101 372.1 226 80.1
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 3.1e-101 372.1 226 81.9
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 3.1e-101 372.1 226 81.4
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 1.5e-100 369.8 226 81.9
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 3.4e-100 368.6 226 78.8
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 4.4e-100 368.2 226 80.1
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 5.8e-100 367.9 226 79.6
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 5.8e-100 367.9 226 79.6
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 5.8e-100 367.9 226 78.3
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 9.8e-100 367.1 226 79.2
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 9.8e-100 367.1 226 79.2
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 9.8e-100 367.1 226 80.1
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.7e-99 366.3 226 79.2
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.7e-99 366.3 226 78.8
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 2.2e-99 365.9 226 79.2
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 3.7e-99 365.2 226 80.5
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.9e-99 364.8 227 80.6
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.9e-99 364.8 227 80.6
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 6.4e-99 364.4 226 78.8
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 1.4e-98 363.2 224 78.6
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 1.9e-98 362.8 226 79.6
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.9e-98 362.8 226 79.6
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 1.9e-98 362.8 280 67.9
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 2.4e-98 362.5 224 79.9
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 2.4e-98 362.5 226 77.4
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 4.1e-98 361.7 226 80.5
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 7.1e-98 360.9 225 79.1
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 1.6e-97 359.8 226 77.0
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 1.6e-97 359.8 226 77.0
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 1.6e-97 359.8 226 76.5
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 1.6e-97 359.8 226 78.8
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 1.6e-97 359.8 226 79.2
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 2.7e-97 359.0 226 76.1
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 4.6e-97 358.2 226 80.1
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 6.0e-97 357.8 226 77.4
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 6.0e-97 357.8 226 76.1
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 7.8e-97 357.5 226 77.4
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.0e-96 357.1 226 79.6
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 1.7e-96 356.3 226 77.4
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 2.3e-96 355.9 226 79.2
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 3.9e-96 355.1 226 76.5
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 1.9e-95 352.8 226 77.0
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 2.5e-95 352.4 225 77.8
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 6.2e-94 347.8 226 75.7
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 8.1e-94 347.4 226 74.8
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 1.4e-93 346.7 226 76.1
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 3.1e-93 345.5 226 73.0
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 5.2e-93 344.7 224 77.7
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 6.8e-93 344.4 197 83.8
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 1.2e-92 343.6 226 77.4
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 2.6e-92 342.4 226 74.8
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 4.4e-92 341.7 226 73.9
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 4.4e-92 341.7 197 84.3
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 5.8e-92 341.3 226 75.2
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 7.6e-92 340.9 226 75.2
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 1.7e-91 339.7 229 73.4
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 2.2e-91 339.3 226 74.3
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 2.9e-91 339.0 228 75.0
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 8.3e-91 337.4 226 73.9
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 1.1e-90 337.0 226 72.1
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 1.1e-90 337.0 227 73.6
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 1.9e-90 336.3 226 73.5
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 2.4e-90 335.9 226 73.5
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 2.4e-90 335.9 226 73.5
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 3.2e-90 335.5 226 73.0
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 4.1e-90 335.1 226 70.4
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 5.4e-90 334.7 226 73.0
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 5.4e-90 334.7 226 74.3
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 2.1e-89 332.8 226 73.5
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 4.6e-89 331.6 226 72.6
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 3.0e-88 328.9 267 65.2
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 8.6e-88 327.4 226 72.1
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 1.5e-87 326.6 226 71.2
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 3.3e-87 325.5 226 70.4
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 3.3e-87 325.5 226 72.6
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 3.3e-87 325.5 208 75.5
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 1.6e-86 323.2 226 67.7
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 1.6e-86 323.2 226 73.0
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 2.1e-86 322.8 226 70.8
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 2.8e-86 322.4 226 71.2
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 2.8e-86 322.4 227 72.2
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 3.6e-86 322.0 228 71.1
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 3.6e-86 322.0 226 69.5
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 6.2e-86 321.2 228 70.6
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 6.2e-86 321.2 226 70.8
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 1.1e-85 320.5 226 73.9
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 3.1e-85 318.9 233 69.1
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 8.9e-85 317.4 226 68.6
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 1.2e-84 317.0 226 69.0
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 7.8e-81 304.3 220 67.3
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 1.3e-80 303.5 226 68.1
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 1.7e-80 303.1 226 67.7
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 3.9e-80 302.0 175 83.4
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 5.1e-80 301.6 226 67.7
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 3.3e-79 298.9 226 69.9
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 6.2e-78 294.7 226 67.3
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 6.9e-77 291.2 229 62.0
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 1.5e-76 290.0 226 62.8
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 3.2e-74 282.3 177 76.8
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 9.3e-74 280.8 227 62.1
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 1.0e-72 277.3 211 64.5
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 1.3e-72 276.9 226 61.5
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 4.3e-71 271.9 226 65.9
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 5.8e-68 261.5 226 63.3
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 2.4e-66 256.1 261 54.4
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 2.4e-66 256.1 261 54.4
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 1.2e-65 253.8 229 60.3
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 2.1e-65 253.1 246 56.5
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 7.9e-65 251.1 250 58.0
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 6.7e-64 248.1 226 54.0
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 1.6e-54 216.9 164 66.5
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 3.1e-53 212.6 226 50.0
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 5.3e-53 211.8 226 48.7
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 6.1e-49 198.4 225 45.8
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.8e-48 196.8 123 75.6
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 1.1e-42 177.6 206 44.7
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 3.2e-42 176.0 229 44.1
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 4.2e-42 175.6 232 40.9
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 3.9e-40 169.1 130 64.6
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 7.7e-36 154.8 101 74.3
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.2e-35 153.3 101 73.3
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 3.8e-35 152.5 208 46.6
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 1.3e-30 137.5 150 50.0
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.2e-25 120.9 72 75.0
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 1.8e-21 107.1 106 57.5
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 2.2e-19 100.1 123 50.4
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 2.2e-19 100.1 65 64.6
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 4.2e-18 95.9 80 65.0
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 8.0e-17 91.7 51 82.4
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 8.0e-17 91.7 51 82.4
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.8e-16 90.5 51 82.4
CDE02G3434 Ceratophyllum demersum HOM05D004972 ORTHO05D000215 2.3e-16 90.1 100 54.0
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 2.3e-16 90.1 79 57.0
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 5.2e-16 89.0 51 82.4
Cfa026650 Carpinus fangiana HOM05D004972 ORTHO05D006309 8.3e-14 81.6 223 30.9
Gorai.001G223500 Gossypium raimondii HOM05D004972 ORTHO05D029864 1.2e-12 77.8 52 75.0
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 2.2e-11 73.6 51 72.5
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 6.5e-11 72.0 51 72.5
Gohir.D11G085800 Gossypium hirsutum HOM05D001136 ORTHO05D011526 1.2e-09 67.8 37 83.8
SHI16326 Sapria himalayana HOM05D004972 ORTHO05D006309 2.0e-07 60.5 56 58.9


User provided reference genes

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