Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 1.5e-166 589.3 283 100.0
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 4.9e-141 504.6 283 83.4
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 5.1e-138 494.6 282 83.0
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 1.6e-131 473.0 281 79.0
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 1.9e-129 466.1 283 77.4
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 4.3e-129 464.9 284 77.8
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 5.7e-129 464.5 284 76.8
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 1.3e-128 463.4 284 76.4
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 3.7e-128 461.8 284 78.2
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 3.7e-128 461.8 283 75.6
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 4.8e-128 461.5 283 76.3
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 1.4e-127 459.9 282 75.5
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 1.8e-127 459.5 284 76.8
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 2.4e-127 459.1 284 76.4
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 3.1e-127 458.8 281 77.9
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 4.1e-127 458.4 281 77.2
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 5.3e-127 458.0 270 80.4
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 1.2e-126 456.8 281 76.2
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 2.0e-126 456.1 284 75.7
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 2.6e-126 455.7 280 75.0
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 3.4e-126 455.3 284 75.7
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 3.4e-126 455.3 284 76.1
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 5.9e-126 454.5 284 75.4
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 1.0e-125 453.8 284 75.7
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 1.0e-125 453.8 280 75.0
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 1.3e-125 453.4 268 80.2
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 1.3e-125 453.4 284 75.4
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 1.3e-125 453.4 283 76.0
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 2.2e-125 452.6 283 75.6
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 2.9e-125 452.2 284 76.1
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 2.9e-125 452.2 283 74.6
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 3.8e-125 451.8 278 77.3
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 5.0e-125 451.4 283 74.2
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 5.0e-125 451.4 278 75.9
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 6.5e-125 451.1 283 74.2
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 8.5e-125 450.7 283 75.6
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 1.1e-124 450.3 284 75.7
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 1.4e-124 449.9 283 75.3
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 1.9e-124 449.5 283 75.3
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 3.2e-124 448.7 278 74.8
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 5.5e-124 448.0 284 75.7
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 7.2e-124 447.6 283 74.2
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 9.4e-124 447.2 280 74.3
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 9.4e-124 447.2 286 75.5
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 1.2e-123 446.8 284 76.1
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 1.2e-123 446.8 283 74.9
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 2.1e-123 446.0 284 73.9
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.7e-123 445.7 281 74.7
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 2.7e-123 445.7 269 76.6
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 3.6e-123 445.3 282 74.8
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 3.6e-123 445.3 283 74.2
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 4.7e-123 444.9 284 75.0
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 6.1e-123 444.5 280 70.7
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 6.1e-123 444.5 283 74.2
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 7.9e-123 444.1 281 74.7
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.0e-122 443.7 281 75.1
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 3.9e-122 441.8 282 74.1
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 8.8e-122 440.7 280 71.1
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 1.1e-121 440.3 283 74.9
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 1.5e-121 439.9 280 72.1
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 2.0e-121 439.5 283 71.7
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 2.0e-121 439.5 281 70.8
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 2.0e-121 439.5 280 70.7
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 2.6e-121 439.1 282 73.8
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 3.3e-121 438.7 280 70.0
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 3.3e-121 438.7 282 73.4
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 4.4e-121 438.3 288 69.8
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 9.7e-121 437.2 250 82.0
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 1.3e-120 436.8 280 70.4
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 4.8e-120 434.9 284 71.5
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 1.1e-119 433.7 282 72.0
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 1.4e-119 433.3 280 70.7
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 1.4e-119 433.3 280 70.7
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 1.8e-119 433.0 280 70.0
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 1.8e-119 433.0 283 72.4
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 4.1e-119 431.8 280 69.6
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 4.1e-119 431.8 280 69.6
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 4.5e-118 428.3 286 73.1
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 1.0e-117 427.2 280 69.3
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 3.8e-117 425.2 274 74.5
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 5.0e-117 424.9 282 71.3
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 1.4e-116 423.3 284 71.5
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 1.4e-116 423.3 270 74.8
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 1.9e-116 422.9 278 73.4
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 1.6e-115 419.9 313 65.2
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 2.1e-115 419.5 284 71.8
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 1.0e-114 417.2 247 79.4
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 1.0e-114 417.2 281 70.5
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 1.0e-114 417.2 281 70.5
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 1.4e-114 416.8 284 69.7
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 6.7e-114 414.5 311 65.6
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 8.8e-114 414.1 279 69.9
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 4.8e-112 408.3 279 68.5
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 1.8e-111 406.4 298 67.4
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 1.3e-109 400.2 266 73.3
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 5.0e-109 398.3 278 66.2
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 6.5e-109 397.9 265 70.6
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 1.9e-108 396.4 269 69.1
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 4.1e-103 378.6 259 65.6
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 5.3e-103 378.3 245 73.5
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 3.8e-101 372.1 251 66.9
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 3.8e-101 372.1 251 66.5
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 1.1e-100 370.5 236 75.0
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 1.5e-92 343.6 190 83.2
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 1.9e-92 343.2 248 63.7
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 4.2e-92 342.0 269 59.5
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 1.0e-90 337.4 273 55.7
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 1.8e-90 336.7 425 45.6
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 2.2e-88 329.7 268 60.8
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 3.5e-86 322.4 274 55.8
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 8.6e-85 317.8 418 44.7
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 3.2e-79 299.3 167 79.6
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 9.2e-79 297.7 264 55.3
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 2.0e-78 296.6 167 79.0
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 6.0e-78 295.0 176 75.6
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 4.7e-75 285.4 280 49.6
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 1.3e-72 277.3 176 69.9
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 5.4e-71 271.9 143 83.2
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 2.7e-70 269.6 309 46.9
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 2.0e-65 253.4 297 44.4
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 3.4e-65 252.7 166 70.5
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 2.4e-58 229.9 290 43.8
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 2.9e-56 223.0 249 48.2
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 3.0e-53 213.0 147 61.2
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 1.4e-50 204.1 142 67.6
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.2e-49 201.1 135 71.9
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 1.3e-48 197.6 248 44.8
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 9.6e-44 181.4 161 59.6
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 8.1e-43 178.3 219 40.6
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 1.9e-31 140.6 110 56.4
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 1.6e-30 137.5 77 77.9
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 2.3e-29 133.7 72 77.8
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 2.3e-29 133.7 72 77.8
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 6.2e-27 125.6 71 77.5
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 2.3e-21 107.1 82 63.4
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.1e-20 104.8 102 54.9
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.5e-20 104.4 77 67.5
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 1.9e-20 104.0 80 66.2
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 2.0e-17 94.0 91 53.8
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 2.5e-15 87.0 47 83.0
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 5.5e-15 85.9 85 54.1
GSVIVG01029848001 Vitis vinifera HOM05D000172 ORTHO05D000273 2.4e-10 70.5 65 52.3
CBR_g37149 Chara braunii HOM05D005341 ORTHO05D017343 4.2e-07 59.7 117 29.9
FAN21G0384 Fragaria x ananassa HOM05D005341 ORTHO05D006712 7.9e-06 55.5 83 44.6


User provided reference genes

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